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The map label for this gene is yfiA [C]

Identifier: 226947394

GI number: 226947394

Start: 200955

End: 201482

Strand: Direct

Name: yfiA [C]

Synonym: CLM_0220

Alternate gene names: 226947394

Gene position: 200955-201482 (Clockwise)

Preceding gene: 226947393

Following gene: 226947395

Centisome position: 4.84

GC content: 29.17

Gene sequence:

>528_bases
ATGAAAATAACAGTAATAGGCAAAAATATTGAGATAACAAATGCTTTAAGGGAGACAGTTGAAAAAAAGCTGTCAAAGCT
TGAAAGATTTTTCAACCCTGATGTAGTTGCAACAGCTACATTGAGTGTACACAAAAATAAGCAAACTATAGAAGTTACAA
TACCATTCCATGGAGTTATATTAAGAGGTGAAGAAACAACAGAGGATATGTATGCATCTATAGACATGGTAATAGATAAA
TTAGAAGGACAAGTAAGAAAGCAAAAAACTAAACTTCAACGTAAGATTCATGATGGTTCATTAAGATTTCAATATATACC
AGATTATGAAAGTGGAGAAAATAAAGAAACTCAAATAGTAAAAACTAAAAAATTTGCTATGAAACCAATGTCTTCAGAAG
AAGCGGTTTTACAAATGGAACTTTTAGGACATAATTTCTTTGTATATCAAAATGCTGATACAGAGGAAGTAAATGTTATA
TATAGAAGAAAAGATGGTAATTATGGTTTAATAGAACCTGAATTTTAA

Upstream 100 bases:

>100_bases
TTTAAAAAATTTCTATTGAGTTTTTTAAAAAATAGTATTAAAATATAAATAACATAAAAAGATTAAAAACATAATCAAGA
ACAGAAAGAGGGGCTGAAGA

Downstream 100 bases:

>100_bases
AATAATATATTAACATGTTAATAAAGAATTAGTAAAAGTAGACATATACAAGGATATATGTCTACTTTTTATATAGATAA
GATTTATAAACCTAGAGTTT

Product: ribosomal subunit interface protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 175; Mature: 175

Protein sequence:

>175_residues
MKITVIGKNIEITNALRETVEKKLSKLERFFNPDVVATATLSVHKNKQTIEVTIPFHGVILRGEETTEDMYASIDMVIDK
LEGQVRKQKTKLQRKIHDGSLRFQYIPDYESGENKETQIVKTKKFAMKPMSSEEAVLQMELLGHNFFVYQNADTEEVNVI
YRRKDGNYGLIEPEF

Sequences:

>Translated_175_residues
MKITVIGKNIEITNALRETVEKKLSKLERFFNPDVVATATLSVHKNKQTIEVTIPFHGVILRGEETTEDMYASIDMVIDK
LEGQVRKQKTKLQRKIHDGSLRFQYIPDYESGENKETQIVKTKKFAMKPMSSEEAVLQMELLGHNFFVYQNADTEEVNVI
YRRKDGNYGLIEPEF
>Mature_175_residues
MKITVIGKNIEITNALRETVEKKLSKLERFFNPDVVATATLSVHKNKQTIEVTIPFHGVILRGEETTEDMYASIDMVIDK
LEGQVRKQKTKLQRKIHDGSLRFQYIPDYESGENKETQIVKTKKFAMKPMSSEEAVLQMELLGHNFFVYQNADTEEVNVI
YRRKDGNYGLIEPEF

Specific function: Probably Modulates The Activity Of Sigma(54) (Rpon). [C]

COG id: COG1544

COG function: function code J; Ribosome-associated protein Y (PSrp-1)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S30Ae family [H]

Homologues:

Organism=Escherichia coli, GI1789595, Length=94, Percent_Identity=39.3617021276596, Blast_Score=67, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003489 [H]

Pfam domain/function: PF02482 Ribosomal_S30AE [H]

EC number: NA

Molecular weight: Translated: 20244; Mature: 20244

Theoretical pI: Translated: 6.98; Mature: 6.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKITVIGKNIEITNALRETVEKKLSKLERFFNPDVVATATLSVHKNKQTIEVTIPFHGVI
CEEEEEECCEEHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCEEEEEEECCEEEE
LRGEETTEDMYASIDMVIDKLEGQVRKQKTKLQRKIHDGSLRFQYIPDYESGENKETQIV
EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEE
KTKKFAMKPMSSEEAVLQMELLGHNFFVYQNADTEEVNVIYRRKDGNYGLIEPEF
EEHHHHCCCCCCCHHHEEEEECCCEEEEEECCCCCEEEEEEEEECCCCCEECCCC
>Mature Secondary Structure
MKITVIGKNIEITNALRETVEKKLSKLERFFNPDVVATATLSVHKNKQTIEVTIPFHGVI
CEEEEEECCEEHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCEEEEEEECCEEEE
LRGEETTEDMYASIDMVIDKLEGQVRKQKTKLQRKIHDGSLRFQYIPDYESGENKETQIV
EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEE
KTKKFAMKPMSSEEAVLQMELLGHNFFVYQNADTEEVNVIYRRKDGNYGLIEPEF
EEHHHHCCCCCCCHHHEEEEECCCEEEEEECCCCCEEEEEEEEECCCCCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA