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The map label for this gene is comF [H]

Identifier: 226947393

GI number: 226947393

Start: 199853

End: 200530

Strand: Direct

Name: comF [H]

Synonym: CLM_0219

Alternate gene names: 226947393

Gene position: 199853-200530 (Clockwise)

Preceding gene: 226947392

Following gene: 226947394

Centisome position: 4.81

GC content: 24.19

Gene sequence:

>678_bases
ATGGGAACTGGGATTTTTAACTATATAAAATATATTATAGAATGCATAGGAGAAGTGATATATCCCTATGAAAATAAATG
TGTAATATGTGAAAAATATATAGAAGAAGATTTAATATGCAAAGAATGCTTTAGTTCTATAAAAAGGTGCAGTGATGTTA
AAATTATTGAAAAGGGAAAAGATTGCTTTCCAGCGTTTCCTACTTGTTATTATTCAGGTATAATGATGGAACTTATATTA
AATTTAAAATATAAAGGTGATTTTAAAAGTGGAGAAGTAATAGCAAATTTAATGTGTAAAAAAGTAAAAGAAGTTAATAT
AAATACAGATATTATAACTTTTGTTCCATCCAGTAAAAAATCTTATAAAAAAAGAGGATATAATCAAAGTGAATACTTAG
CTAAAATTATAAGTAAAAACATTAATGTACCTATAGCACATTGTTTAAAAAAATATATGAATACAAAAGATCAAATAGGA
TTAAATGGACTTGAAAGATGGTTAAACGTTGAGAATAGTTTTAAAGTTTATAATGAAAAATGTATAAAAAATAAAAAAGT
ACTTTTAATTGATGATGTTTTAACCACAGGAGCGACTTCCTTTTATTGTGCTAATGAGTTAAAAAAAAGAGGTGCAAAAG
AAATTTTTATATTGACTGCAGCAAAAAGTGATGTATAA

Upstream 100 bases:

>100_bases
GTGAATACGATTTTAAAGGTGAAATTATATTTTTAGCTAATATGGAAACTGTACATATGGAAAAAGCTAAAAATATAATA
AGAAGCTTTAATAAAGAAGC

Downstream 100 bases:

>100_bases
TTTAAATATAGTAAAATTAGGTTTGTGGTTGAAAGTCGATGCCAGTCGCAGGCAAAACGATCCACGTAAGTTAAATAAAA
ATATTTGATGAGCATGGTGC

Product: comF protein

Products: NA

Alternate protein names: DNA transformation protein ComF; Protein COM101A [H]

Number of amino acids: Translated: 225; Mature: 224

Protein sequence:

>225_residues
MGTGIFNYIKYIIECIGEVIYPYENKCVICEKYIEEDLICKECFSSIKRCSDVKIIEKGKDCFPAFPTCYYSGIMMELIL
NLKYKGDFKSGEVIANLMCKKVKEVNINTDIITFVPSSKKSYKKRGYNQSEYLAKIISKNINVPIAHCLKKYMNTKDQIG
LNGLERWLNVENSFKVYNEKCIKNKKVLLIDDVLTTGATSFYCANELKKRGAKEIFILTAAKSDV

Sequences:

>Translated_225_residues
MGTGIFNYIKYIIECIGEVIYPYENKCVICEKYIEEDLICKECFSSIKRCSDVKIIEKGKDCFPAFPTCYYSGIMMELIL
NLKYKGDFKSGEVIANLMCKKVKEVNINTDIITFVPSSKKSYKKRGYNQSEYLAKIISKNINVPIAHCLKKYMNTKDQIG
LNGLERWLNVENSFKVYNEKCIKNKKVLLIDDVLTTGATSFYCANELKKRGAKEIFILTAAKSDV
>Mature_224_residues
GTGIFNYIKYIIECIGEVIYPYENKCVICEKYIEEDLICKECFSSIKRCSDVKIIEKGKDCFPAFPTCYYSGIMMELILN
LKYKGDFKSGEVIANLMCKKVKEVNINTDIITFVPSSKKSYKKRGYNQSEYLAKIISKNINVPIAHCLKKYMNTKDQIGL
NGLERWLNVENSFKVYNEKCIKNKKVLLIDDVLTTGATSFYCANELKKRGAKEIFILTAAKSDV

Specific function: Involved in transformation (competence for DNA uptake) [H]

COG id: COG1040

COG function: function code R; Predicted amidophosphoribosyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ComF/GntX family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005222
- InterPro:   IPR000836 [H]

Pfam domain/function: PF00156 Pribosyltran [H]

EC number: NA

Molecular weight: Translated: 25777; Mature: 25645

Theoretical pI: Translated: 8.85; Mature: 8.85

Prosite motif: PS00103 PUR_PYR_PR_TRANSFER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
7.6 %Cys+Met (Translated Protein)
5.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
7.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGTGIFNYIKYIIECIGEVIYPYENKCVICEKYIEEDLICKECFSSIKRCSDVKIIEKGK
CCCHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCC
DCFPAFPTCYYSGIMMELILNLKYKGDFKSGEVIANLMCKKVKEVNINTDIITFVPSSKK
CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHH
SYKKRGYNQSEYLAKIISKNINVPIAHCLKKYMNTKDQIGLNGLERWLNVENSFKVYNEK
HHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHCCCCHHHHHHHH
CIKNKKVLLIDDVLTTGATSFYCANELKKRGAKEIFILTAAKSDV
HHCCCCEEEEECHHHHCCHHHHHHHHHHHCCCCEEEEEEECCCCC
>Mature Secondary Structure 
GTGIFNYIKYIIECIGEVIYPYENKCVICEKYIEEDLICKECFSSIKRCSDVKIIEKGK
CCHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCC
DCFPAFPTCYYSGIMMELILNLKYKGDFKSGEVIANLMCKKVKEVNINTDIITFVPSSKK
CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHH
SYKKRGYNQSEYLAKIISKNINVPIAHCLKKYMNTKDQIGLNGLERWLNVENSFKVYNEK
HHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHCCCCHHHHHHHH
CIKNKKVLLIDDVLTTGATSFYCANELKKRGAKEIFILTAAKSDV
HHCCCCEEEEECHHHHCCHHHHHHHHHHHCCCCEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1916268; 1856167; 7542800 [H]