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The map label for this gene is yrrC [H]

Identifier: 226947391

GI number: 226947391

Start: 196598

End: 198832

Strand: Direct

Name: yrrC [H]

Synonym: CLM_0217

Alternate gene names: 226947391

Gene position: 196598-198832 (Clockwise)

Preceding gene: 226947390

Following gene: 226947392

Centisome position: 4.73

GC content: 29.35

Gene sequence:

>2235_bases
ATGCAGGAAATACAGGGATTTATAGAGGATATACTTTTTAAAAATGATGAAAATGGGTATGTAGTGGCAAAAATAAGGAA
GAAGAAAGAGCTTATAACCATAGTCGGATGTATGCCCTACATAACAGAAGGACAAAACTTAAAATTAAAAGGTGAATGGG
TAATTCATCCACAATTTGGTAATCAATTCAAAGTAGAAGTATGTGAAGAAATAGTACCCGATACTGTAGCTGGTATAGAA
AGATATTTATCCTCAGGAATCATATCAGGTATAGGCCCAGTGACTGCAAAAAAAATTGTGAAAAAATTTGGAGAAGAAAC
ATTAAATATATTAGACAGTAATATAGAAAGATTAACAGAGATAGAGGGAATAGGAAAGAAGAAGATAGAGGTAATATATG
ATTCCTATATAAAACAAAATGAAGTGCGAAATATAATGATGTTTTTTCAAAATTACGGAGTTACACCTAACCAATGCATG
AAAGTTTATAAAAGATTTGGAGAAAATTCTATATCAATAGTTAAAGAGAATCCATATATACTTACGGAAGAAATAAGAGG
AATAGGTTTCAAGACAGCAGATAAAATAGCTAGGAGCTTAGGAATAGCCTCTAATTCACCTTTTAGAATTCAGAGTGGAA
TAAATTATATAATAAATGGATTCTGTAGTTTAGGGAATACTTATATGCCTTTAGAGAAGCTTGTAAGTGAGGCTATGGAC
ATATTAGGGGTAAGAGAAGAAGAAATACATGAAAATATATATAATAATATAGCAGAAAATAAATTAAAGATAGAAAAAGT
AAAAGAACAAAGTTGTGTTTTTACTCTACCGTATTATTATTGCGAATTAGGAGTTACAAAAAAAATACTTAGCTTATCTT
TGTCACAATATGATAATTTAAATATAAATATAGAAGACGAGATAGTGAGTTTTGAAAAAAATAATAATATAAAATTTCAT
GATTCTCAAAGAGAGGCTATAAAAGGTGCCTTAGAAAATGGAGTAGAAATAATAACAGGAGGCCCTGGTACAGGAAAAAC
AACTATTATCAATTGTATAACAGAGATATTTGAAAAAGCTAATATGAAAGTTTATATGGCAGCACCTACAGGAAGAGCGG
CTAAAAGAATGTCTGAAACTACAGGTAGAGAAGCTAAAACAATACATAGGATGTTAGAAATGGGTGTATCTGAGGATGAC
ACAGAAGAAGTTTTTTCTAAAGGTGAAGAAACTCCTTTAGAATGTGATGTAGTAATAATAGATGAAGCCTCCATGATAGA
TATAATATTAATGAATACACTGTTAAAGGCCATAGCTTTAGGTACAAGAATAATAATAGTTGGGGATGTAGATCAACTTC
CCTCAGTAGGTCCAGGGAATGTATTAAGAGATTTAATAGAAAGTAAGTGTGTAAAGGTAGTTAGATTAAAGGAGATATTC
AGACAATCTAAAGAAAGTATGATTATAGTAAATGCCCATAGAATAAATGATGGAGAGATGCCAATTATAAATAAAAAAGA
TAAAGATTTTTATTTTATAGAATGTAGTGAACCTAAAAAAATAGTTAATACATTATTAGAACTTTCAAATAGAAGATTGC
CTAAATTTAATAAAAGTTGGCATAAAATTCATGATATACAAATACTATCTCCAATGAGAAAGGGAGTTCTAGGAGTTTCT
AGTTTAAATAAGGAATTACAATCTGTTTTAAACCCTAAAAATGATTCAAAAAAAGAAATGGAATTTAAGGATTATATATT
TAGAGTAGGAGATAAAGTTATGCAAACCAAAAATAACTACTCTTTAAAGTGGACCAGAGCAAGTGGTGAGGGGGAAGCAG
AAGGGTTAGGAATATTTAATGGAGATGTAGGATATATAGAGGATATAGATGAGGAAAAAGAAACAATTCAGGTCTTATTT
GATAATGAAAGAAGAGTAATATATGAAAATTTATATTTAGATGAAATAGATTTAGCTTATGCTGTAACTATTCATAAAAG
TCAAGGTAGCGAATTTCCAGTAGTAATTATGCCAGCTTTTAAAGGTCCCCCACTTTTAATGAATAGAAATTTATTGTATA
CAGGAATAACAAGAGCAAAAAGGCTTGTTGTCTTGGTAGGATCTTTAAAATCTATTAATTTTATGGTACAGAATGATAAA
ATTTTTGAAAGATACTCTCTTTTAAAGTGGCGTATAAGTAATATTTTAGATACTGAAATTATAAATGGAGAATAA

Upstream 100 bases:

>100_bases
AATGAATGGCTAAAATTAAAAAAGTATAGATTCCTATACTTATAAGCAGCGGTACTATGAATAATAATGATGGAATGAAA
AAGATTAGGAGAGATTTTTT

Downstream 100 bases:

>100_bases
TATATTATATAGAAGGTGAACCTGTATGTCTTTACTTAAAAGGTCCAAAAAAGAATATGAAGTTAATGAATTTAGTCAAA
TTATATTAAATTGGTGTAAA

Product: helicase, RecD/TraA family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 744; Mature: 744

Protein sequence:

>744_residues
MQEIQGFIEDILFKNDENGYVVAKIRKKKELITIVGCMPYITEGQNLKLKGEWVIHPQFGNQFKVEVCEEIVPDTVAGIE
RYLSSGIISGIGPVTAKKIVKKFGEETLNILDSNIERLTEIEGIGKKKIEVIYDSYIKQNEVRNIMMFFQNYGVTPNQCM
KVYKRFGENSISIVKENPYILTEEIRGIGFKTADKIARSLGIASNSPFRIQSGINYIINGFCSLGNTYMPLEKLVSEAMD
ILGVREEEIHENIYNNIAENKLKIEKVKEQSCVFTLPYYYCELGVTKKILSLSLSQYDNLNINIEDEIVSFEKNNNIKFH
DSQREAIKGALENGVEIITGGPGTGKTTIINCITEIFEKANMKVYMAAPTGRAAKRMSETTGREAKTIHRMLEMGVSEDD
TEEVFSKGEETPLECDVVIIDEASMIDIILMNTLLKAIALGTRIIIVGDVDQLPSVGPGNVLRDLIESKCVKVVRLKEIF
RQSKESMIIVNAHRINDGEMPIINKKDKDFYFIECSEPKKIVNTLLELSNRRLPKFNKSWHKIHDIQILSPMRKGVLGVS
SLNKELQSVLNPKNDSKKEMEFKDYIFRVGDKVMQTKNNYSLKWTRASGEGEAEGLGIFNGDVGYIEDIDEEKETIQVLF
DNERRVIYENLYLDEIDLAYAVTIHKSQGSEFPVVIMPAFKGPPLLMNRNLLYTGITRAKRLVVLVGSLKSINFMVQNDK
IFERYSLLKWRISNILDTEIINGE

Sequences:

>Translated_744_residues
MQEIQGFIEDILFKNDENGYVVAKIRKKKELITIVGCMPYITEGQNLKLKGEWVIHPQFGNQFKVEVCEEIVPDTVAGIE
RYLSSGIISGIGPVTAKKIVKKFGEETLNILDSNIERLTEIEGIGKKKIEVIYDSYIKQNEVRNIMMFFQNYGVTPNQCM
KVYKRFGENSISIVKENPYILTEEIRGIGFKTADKIARSLGIASNSPFRIQSGINYIINGFCSLGNTYMPLEKLVSEAMD
ILGVREEEIHENIYNNIAENKLKIEKVKEQSCVFTLPYYYCELGVTKKILSLSLSQYDNLNINIEDEIVSFEKNNNIKFH
DSQREAIKGALENGVEIITGGPGTGKTTIINCITEIFEKANMKVYMAAPTGRAAKRMSETTGREAKTIHRMLEMGVSEDD
TEEVFSKGEETPLECDVVIIDEASMIDIILMNTLLKAIALGTRIIIVGDVDQLPSVGPGNVLRDLIESKCVKVVRLKEIF
RQSKESMIIVNAHRINDGEMPIINKKDKDFYFIECSEPKKIVNTLLELSNRRLPKFNKSWHKIHDIQILSPMRKGVLGVS
SLNKELQSVLNPKNDSKKEMEFKDYIFRVGDKVMQTKNNYSLKWTRASGEGEAEGLGIFNGDVGYIEDIDEEKETIQVLF
DNERRVIYENLYLDEIDLAYAVTIHKSQGSEFPVVIMPAFKGPPLLMNRNLLYTGITRAKRLVVLVGSLKSINFMVQNDK
IFERYSLLKWRISNILDTEIINGE
>Mature_744_residues
MQEIQGFIEDILFKNDENGYVVAKIRKKKELITIVGCMPYITEGQNLKLKGEWVIHPQFGNQFKVEVCEEIVPDTVAGIE
RYLSSGIISGIGPVTAKKIVKKFGEETLNILDSNIERLTEIEGIGKKKIEVIYDSYIKQNEVRNIMMFFQNYGVTPNQCM
KVYKRFGENSISIVKENPYILTEEIRGIGFKTADKIARSLGIASNSPFRIQSGINYIINGFCSLGNTYMPLEKLVSEAMD
ILGVREEEIHENIYNNIAENKLKIEKVKEQSCVFTLPYYYCELGVTKKILSLSLSQYDNLNINIEDEIVSFEKNNNIKFH
DSQREAIKGALENGVEIITGGPGTGKTTIINCITEIFEKANMKVYMAAPTGRAAKRMSETTGREAKTIHRMLEMGVSEDD
TEEVFSKGEETPLECDVVIIDEASMIDIILMNTLLKAIALGTRIIIVGDVDQLPSVGPGNVLRDLIESKCVKVVRLKEIF
RQSKESMIIVNAHRINDGEMPIINKKDKDFYFIECSEPKKIVNTLLELSNRRLPKFNKSWHKIHDIQILSPMRKGVLGVS
SLNKELQSVLNPKNDSKKEMEFKDYIFRVGDKVMQTKNNYSLKWTRASGEGEAEGLGIFNGDVGYIEDIDEEKETIQVLF
DNERRVIYENLYLDEIDLAYAVTIHKSQGSEFPVVIMPAFKGPPLLMNRNLLYTGITRAKRLVVLVGSLKSINFMVQNDK
IFERYSLLKWRISNILDTEIINGE

Specific function: Exhibits Several Catalytic Activities, Including ATP-Dependent Exonuclease, ATP-Stimulated Endonuclease, ATP-Dependent Unwinding And DNA-Dependent ATPase Activities. Strand Cleavage Occurs 5' To 3' During The Unwinding Of Duplex DNA At Chi Sequences, Whi

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789182, Length=430, Percent_Identity=26.046511627907, Blast_Score=119, Evalue=9e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR006345 [H]

Pfam domain/function: NA

EC number: 3.1.11.5

Molecular weight: Translated: 84479; Mature: 84479

Theoretical pI: Translated: 5.73; Mature: 5.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQEIQGFIEDILFKNDENGYVVAKIRKKKELITIVGCMPYITEGQNLKLKGEWVIHPQFG
CHHHHHHHHHHHEECCCCCEEEEEEECCCCEEEEEECCHHHCCCCCEEEEEEEEEECCCC
NQFKVEVCEEIVPDTVAGIERYLSSGIISGIGPVTAKKIVKKFGEETLNILDSNIERLTE
CEEHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IEGIGKKKIEVIYDSYIKQNEVRNIMMFFQNYGVTPNQCMKVYKRFGENSISIVKENPYI
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEECCCEE
LTEEIRGIGFKTADKIARSLGIASNSPFRIQSGINYIINGFCSLGNTYMPLEKLVSEAMD
EEHHHCCCCCCHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHCCCCCCCHHHHHHHHHH
ILGVREEEIHENIYNNIAENKLKIEKVKEQSCVFTLPYYYCELGVTKKILSLSLSQYDNL
HHCCCHHHHHHHHHHHHHHCCHHHHHHCCCCEEEEEHHHHHHHCHHHHHHHHHHHHCCCC
NINIEDEIVSFEKNNNIKFHDSQREAIKGALENGVEIITGGPGTGKTTIINCITEIFEKA
CEEEHHHEEEEECCCCEEEECCHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHC
NMKVYMAAPTGRAAKRMSETTGREAKTIHRMLEMGVSEDDTEEVFSKGEETPLECDVVII
CCEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCEEEEEEE
DEASMIDIILMNTLLKAIALGTRIIIVGDVDQLPSVGPGNVLRDLIESKCVKVVRLKEIF
CCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
RQSKESMIIVNAHRINDGEMPIINKKDKDFYFIECSEPKKIVNTLLELSNRRLPKFNKSW
HCCCCCEEEEEEEECCCCCCCEECCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCCH
HKIHDIQILSPMRKGVLGVSSLNKELQSVLNPKNDSKKEMEFKDYIFRVGDKVMQTKNNY
HHHHHHHHHHHHHHCHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
SLKWTRASGEGEAEGLGIFNGDVGYIEDIDEEKETIQVLFDNERRVIYENLYLDEIDLAY
EEEEEECCCCCCCCCEEEECCCCCCHHCCCCHHHEEEEEECCCCEEEEEEEEEECCCEEE
AVTIHKSQGSEFPVVIMPAFKGPPLLMNRNLLYTGITRAKRLVVLVGSLKSINFMVQNDK
EEEEECCCCCCCCEEEEECCCCCCEEECCCEEEECHHHHHEEEEEEECCCEEEEEEECCH
IFERYSLLKWRISNILDTEIINGE
HHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MQEIQGFIEDILFKNDENGYVVAKIRKKKELITIVGCMPYITEGQNLKLKGEWVIHPQFG
CHHHHHHHHHHHEECCCCCEEEEEEECCCCEEEEEECCHHHCCCCCEEEEEEEEEECCCC
NQFKVEVCEEIVPDTVAGIERYLSSGIISGIGPVTAKKIVKKFGEETLNILDSNIERLTE
CEEHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IEGIGKKKIEVIYDSYIKQNEVRNIMMFFQNYGVTPNQCMKVYKRFGENSISIVKENPYI
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEECCCEE
LTEEIRGIGFKTADKIARSLGIASNSPFRIQSGINYIINGFCSLGNTYMPLEKLVSEAMD
EEHHHCCCCCCHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHCCCCCCCHHHHHHHHHH
ILGVREEEIHENIYNNIAENKLKIEKVKEQSCVFTLPYYYCELGVTKKILSLSLSQYDNL
HHCCCHHHHHHHHHHHHHHCCHHHHHHCCCCEEEEEHHHHHHHCHHHHHHHHHHHHCCCC
NINIEDEIVSFEKNNNIKFHDSQREAIKGALENGVEIITGGPGTGKTTIINCITEIFEKA
CEEEHHHEEEEECCCCEEEECCHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHC
NMKVYMAAPTGRAAKRMSETTGREAKTIHRMLEMGVSEDDTEEVFSKGEETPLECDVVII
CCEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCEEEEEEE
DEASMIDIILMNTLLKAIALGTRIIIVGDVDQLPSVGPGNVLRDLIESKCVKVVRLKEIF
CCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
RQSKESMIIVNAHRINDGEMPIINKKDKDFYFIECSEPKKIVNTLLELSNRRLPKFNKSW
HCCCCCEEEEEEEECCCCCCCEECCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCCH
HKIHDIQILSPMRKGVLGVSSLNKELQSVLNPKNDSKKEMEFKDYIFRVGDKVMQTKNNY
HHHHHHHHHHHHHHCHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
SLKWTRASGEGEAEGLGIFNGDVGYIEDIDEEKETIQVLFDNERRVIYENLYLDEIDLAY
EEEEEECCCCCCCCCEEEECCCCCCHHCCCCHHHEEEEEECCCCEEEEEEEEEECCCEEE
AVTIHKSQGSEFPVVIMPAFKGPPLLMNRNLLYTGITRAKRLVVLVGSLKSINFMVQNDK
EEEEECCCCCCCCEEEEECCCCCCEEECCCEEEECHHHHHEEEEEEECCCEEEEEEECCH
IFERYSLLKWRISNILDTEIINGE
HHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: DNA-dependent ATPase activity; Phosphoric ester hydrolysis [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]