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The map label for this gene is ydhO [C]

Identifier: 226947288

GI number: 226947288

Start: 87734

End: 88831

Strand: Direct

Name: ydhO [C]

Synonym: CLM_0105

Alternate gene names: 226947288

Gene position: 87734-88831 (Clockwise)

Preceding gene: 226947287

Following gene: 226947289

Centisome position: 2.11

GC content: 34.06

Gene sequence:

>1098_bases
GTGAATAAGAAAGTTTTGTCTGCAGTAATAGCATTAGCCTTAGCAGTGTCTATTAATGCAAAAGTTATGGCAGCACCATC
AAGTGGACAAGCACATGATAAGACATTAGAACTTGAAGAAAAAATACAAAATATGGACAATAGTATACAAAACTTAATGT
ATAAAATAGAAGATAATAATAAAGATATAGAAAAGAATAAAGAAGATATATCTAAATTAGGAAAAGATATAGAAAAAGCT
CAAAAACAAATAGAATCCCGTGAAGATTTATTTAATAAAAGGGTAAGAGCTATGTACATAAGTGGCTTTGATAGTTATGC
AGACGTAATATTAGAATCAAAAGGATTAAGCGATTTAATAACTAGAGTAGACACAGTTAAAAAGGTTATGGGATTTGACC
AAGGGGTTATAAAGGAATTAAAGACAAAAAAAGAAGAAATTAAAGAAAAGAAAGTTGCTTTAGATAAGAAAAGTACAGAA
ATAGTACAACTTAAAGCAGAAAATGAAAAGAAATTATCTAGTATGAAGTCAGAAAAAACTAAGCAGGAAGTGGTACTTAA
AGATTTACGAGATCAGGAAATAAAAGCGGCAGCTGAGGCAGCGCAAAAAAAAGCAGCTGAGAGACAAGTAGCACAATCAC
AAGCTTCTGTATCACAATCAAGAGGTGGAAACAGTGTTTCTGTAGAAGCTCCAGCTTCATCAGGAAGTAGTAGTAGTTCT
TCTAATTCTAGTAATAAACCATCAAATCCAGCACCACCAGCAACACATGGAGATGTAGTAGGATACGCTATGCAATTCCA
AGGTGTTCCTTATGTTTGGGGGGGGACATCACCAAATGGATTTGACTGTTCAGGATTTGTACAATATGTATATAGAAATG
CTGCAGGTATAGAATTACCAAGGGATACTTATGGACAAATTGGAGCAGGAACTCGAGTTTCACAAGATCAATTGCAACCT
GGTGATTTAGTATTCCCACATACAGGTCATGTAGGTATATATATAGGTGGAGGACAAATGATACATGCTCCTCAAACAGG
TGATGTAGTAAAAATTTCTTCGGTTTGGAAATTTTATGCAGGCGTAAGAGTAAGATAA

Upstream 100 bases:

>100_bases
TTTTAAAAAAAATCCTTGTTAAAGTTGAGTTCTTTACTGAAATGGTGATATAATAGTTTTATGTTACAATCATAAAAGGG
GAATGGGAGGAAGATAAATA

Downstream 100 bases:

>100_bases
TTAATAATTTTTATATAAAACAACAAAAGTGGAAACTAAAATTAGTTTCCACTTTTAGTTTATATAATTAAAAAAAAGCC
CCTAGATGAGGCTTTTAAAT

Product: NlpC/P60 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 365; Mature: 365

Protein sequence:

>365_residues
MNKKVLSAVIALALAVSINAKVMAAPSSGQAHDKTLELEEKIQNMDNSIQNLMYKIEDNNKDIEKNKEDISKLGKDIEKA
QKQIESREDLFNKRVRAMYISGFDSYADVILESKGLSDLITRVDTVKKVMGFDQGVIKELKTKKEEIKEKKVALDKKSTE
IVQLKAENEKKLSSMKSEKTKQEVVLKDLRDQEIKAAAEAAQKKAAERQVAQSQASVSQSRGGNSVSVEAPASSGSSSSS
SNSSNKPSNPAPPATHGDVVGYAMQFQGVPYVWGGTSPNGFDCSGFVQYVYRNAAGIELPRDTYGQIGAGTRVSQDQLQP
GDLVFPHTGHVGIYIGGGQMIHAPQTGDVVKISSVWKFYAGVRVR

Sequences:

>Translated_365_residues
MNKKVLSAVIALALAVSINAKVMAAPSSGQAHDKTLELEEKIQNMDNSIQNLMYKIEDNNKDIEKNKEDISKLGKDIEKA
QKQIESREDLFNKRVRAMYISGFDSYADVILESKGLSDLITRVDTVKKVMGFDQGVIKELKTKKEEIKEKKVALDKKSTE
IVQLKAENEKKLSSMKSEKTKQEVVLKDLRDQEIKAAAEAAQKKAAERQVAQSQASVSQSRGGNSVSVEAPASSGSSSSS
SNSSNKPSNPAPPATHGDVVGYAMQFQGVPYVWGGTSPNGFDCSGFVQYVYRNAAGIELPRDTYGQIGAGTRVSQDQLQP
GDLVFPHTGHVGIYIGGGQMIHAPQTGDVVKISSVWKFYAGVRVR
>Mature_365_residues
MNKKVLSAVIALALAVSINAKVMAAPSSGQAHDKTLELEEKIQNMDNSIQNLMYKIEDNNKDIEKNKEDISKLGKDIEKA
QKQIESREDLFNKRVRAMYISGFDSYADVILESKGLSDLITRVDTVKKVMGFDQGVIKELKTKKEEIKEKKVALDKKSTE
IVQLKAENEKKLSSMKSEKTKQEVVLKDLRDQEIKAAAEAAQKKAAERQVAQSQASVSQSRGGNSVSVEAPASSGSSSSS
SNSSNKPSNPAPPATHGDVVGYAMQFQGVPYVWGGTSPNGFDCSGFVQYVYRNAAGIELPRDTYGQIGAGTRVSQDQLQP
GDLVFPHTGHVGIYIGGGQMIHAPQTGDVVKISSVWKFYAGVRVR

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Secreted, cell wall [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase C40 family [H]

Homologues:

Organism=Escherichia coli, GI1787944, Length=114, Percent_Identity=39.4736842105263, Blast_Score=88, Evalue=7e-19,
Organism=Escherichia coli, GI1788501, Length=100, Percent_Identity=47, Blast_Score=88, Evalue=8e-19,
Organism=Escherichia coli, GI1786421, Length=97, Percent_Identity=42.2680412371134, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1788001, Length=94, Percent_Identity=43.6170212765958, Blast_Score=78, Evalue=8e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 39728; Mature: 39728

Theoretical pI: Translated: 9.54; Mature: 9.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKKVLSAVIALALAVSINAKVMAAPSSGQAHDKTLELEEKIQNMDNSIQNLMYKIEDNN
CCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEECCCC
KDIEKNKEDISKLGKDIEKAQKQIESREDLFNKRVRAMYISGFDSYADVILESKGLSDLI
CCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHCCCHHHHH
TRVDTVKKVMGFDQGVIKELKTKKEEIKEKKVALDKKSTEIVQLKAENEKKLSSMKSEKT
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHH
KQEVVLKDLRDQEIKAAAEAAQKKAAERQVAQSQASVSQSRGGNSVSVEAPASSGSSSSS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC
SNSSNKPSNPAPPATHGDVVGYAMQFQGVPYVWGGTSPNGFDCSGFVQYVYRNAAGIELP
CCCCCCCCCCCCCCCCCCHHHHHHEECCCCEEECCCCCCCCCHHHHHHHHHHCCCCCCCC
RDTYGQIGAGTRVSQDQLQPGDLVFPHTGHVGIYIGGGQMIHAPQTGDVVKISSVWKFYA
CHHCCCCCCCCCCCHHCCCCCCEECCCCCCEEEEECCCEEEECCCCCCEEEHHHHHHHHC
GVRVR
CCCCC
>Mature Secondary Structure
MNKKVLSAVIALALAVSINAKVMAAPSSGQAHDKTLELEEKIQNMDNSIQNLMYKIEDNN
CCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEECCCC
KDIEKNKEDISKLGKDIEKAQKQIESREDLFNKRVRAMYISGFDSYADVILESKGLSDLI
CCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHCCCHHHHH
TRVDTVKKVMGFDQGVIKELKTKKEEIKEKKVALDKKSTEIVQLKAENEKKLSSMKSEKT
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHH
KQEVVLKDLRDQEIKAAAEAAQKKAAERQVAQSQASVSQSRGGNSVSVEAPASSGSSSSS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC
SNSSNKPSNPAPPATHGDVVGYAMQFQGVPYVWGGTSPNGFDCSGFVQYVYRNAAGIELP
CCCCCCCCCCCCCCCCCCHHHHHHEECCCCEEECCCCCCCCCHHHHHHHHHHCCCCCCCC
RDTYGQIGAGTRVSQDQLQPGDLVFPHTGHVGIYIGGGQMIHAPQTGDVVKISSVWKFYA
CHHCCCCCCCCCCCHHCCCCCCEECCCCCCEEEEECCCEEEECCCCCCEEEHHHHHHHHC
GVRVR
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2780297 [H]