Click here to switch to the map view.

The map label for this gene is yabB [H]

Identifier: 226947286

GI number: 226947286

Start: 85999

End: 86739

Strand: Direct

Name: yabB [H]

Synonym: CLM_0103

Alternate gene names: 226947286

Gene position: 85999-86739 (Clockwise)

Preceding gene: 226947285

Following gene: 226947287

Centisome position: 2.07

GC content: 28.48

Gene sequence:

>741_bases
ATGGATAGAATTATAAAAGAAGATGAAACACTAGATGATCTTCAACTAAAGGGAATTCATGTTATACAAAAAAAGCAAGC
ATTCAGATTTGGTATAGATGCAGTATTATTAGCAAATTTCCCTACAATAAAGAATGGAGCTAAAGTAGTAGATTTATGTA
GCGGAACGGGTATAATTCCATTTATATTAGCAGGTAAAACCAATGCTAGTAATATTATAGGAATAGAGATACAAAAGGAA
ATTGCTGATATGGCAAATCGAAGCATAAAGTATAATAACTTGCAGGAAAAGGTTAAGTTTATAGAAGGCGACTTAAAAAA
TTTAAAACTTTTGAAAGACATAGAAAAAGTAGATGTAGTTACAGTAAACCCACCTTACAAAACTCAAGGAACAGGTATTA
TAAATATTAATGACAAAAATGCTATATCTAGACATGAGATTTGTTGTACTTTAGATGATGTAGTAAAGGCAGCTAAAGTT
TTATTAAAAGACAAAGGTAAATTGTATATGATACATAGACCAGATAGGATAGTAGATATAATGAATGTAATGAGAAAGTA
TTATATAGAACCTAAACTAATAAGGACTATACATCCAGCAGTAGACAAAGCACCTTCTATGATATTAATTGAAGGTCAAA
AAAATGGAGGGAAGTTTTTGAAATGGGATAGACCTTTATATATTTATGATGAAAATAATAAATATACAAATGAAGTTAAA
AGAATTTATGGAATGGAATAA

Upstream 100 bases:

>100_bases
CAAAAGACGGTCTTTTTATTCTTTATATATAATGAGATTATTATATTGTTTTGATTTAGAATACACAGAATAAAAAATTA
TTATATAAAAGGTGAATTAT

Downstream 100 bases:

>100_bases
ATAAAAAGGAGAGTATTATATGCTTAATATAGAGGAAGGAAAATTATATGTAGTTCCTACTCCTATAGGAAATTTAAGAG
ATATAACAATAAGAGCATTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 246

Protein sequence:

>246_residues
MDRIIKEDETLDDLQLKGIHVIQKKQAFRFGIDAVLLANFPTIKNGAKVVDLCSGTGIIPFILAGKTNASNIIGIEIQKE
IADMANRSIKYNNLQEKVKFIEGDLKNLKLLKDIEKVDVVTVNPPYKTQGTGIININDKNAISRHEICCTLDDVVKAAKV
LLKDKGKLYMIHRPDRIVDIMNVMRKYYIEPKLIRTIHPAVDKAPSMILIEGQKNGGKFLKWDRPLYIYDENNKYTNEVK
RIYGME

Sequences:

>Translated_246_residues
MDRIIKEDETLDDLQLKGIHVIQKKQAFRFGIDAVLLANFPTIKNGAKVVDLCSGTGIIPFILAGKTNASNIIGIEIQKE
IADMANRSIKYNNLQEKVKFIEGDLKNLKLLKDIEKVDVVTVNPPYKTQGTGIININDKNAISRHEICCTLDDVVKAAKV
LLKDKGKLYMIHRPDRIVDIMNVMRKYYIEPKLIRTIHPAVDKAPSMILIEGQKNGGKFLKWDRPLYIYDENNKYTNEVK
RIYGME
>Mature_246_residues
MDRIIKEDETLDDLQLKGIHVIQKKQAFRFGIDAVLLANFPTIKNGAKVVDLCSGTGIIPFILAGKTNASNIIGIEIQKE
IADMANRSIKYNNLQEKVKFIEGDLKNLKLLKDIEKVDVVTVNPPYKTQGTGIININDKNAISRHEICCTLDDVVKAAKV
LLKDKGKLYMIHRPDRIVDIMNVMRKYYIEPKLIRTIHPAVDKAPSMILIEGQKNGGKFLKWDRPLYIYDENNKYTNEVK
RIYGME

Specific function: Unknown

COG id: COG4123

COG function: function code R; Predicted O-methyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007848 [H]

Pfam domain/function: PF05175 MTS [H]

EC number: NA

Molecular weight: Translated: 28012; Mature: 28012

Theoretical pI: Translated: 9.64; Mature: 9.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRIIKEDETLDDLQLKGIHVIQKKQAFRFGIDAVLLANFPTIKNGAKVVDLCSGTGIIP
CCCCCCCCCCCCHHEECCEEEEHHHHHHHHCCCEEEEECCCCCCCCCEEEEECCCCCCEE
FILAGKTNASNIIGIEIQKEIADMANRSIKYNNLQEKVKFIEGDLKNLKLLKDIEKVDVV
EEEECCCCCCCEEEEEEHHHHHHHHCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCEEE
TVNPPYKTQGTGIININDKNAISRHEICCTLDDVVKAAKVLLKDKGKLYMIHRPDRIVDI
ECCCCCCCCCCEEEEECCCCCCCHHHEEECHHHHHHHHHHHHHCCCCEEEEECCHHHHHH
MNVMRKYYIEPKLIRTIHPAVDKAPSMILIEGQKNGGKFLKWDRPLYIYDENNKYTNEVK
HHHHHHHCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCEEEECCCEEEEECCCCHHHHHH
RIYGME
HHHCCC
>Mature Secondary Structure
MDRIIKEDETLDDLQLKGIHVIQKKQAFRFGIDAVLLANFPTIKNGAKVVDLCSGTGIIP
CCCCCCCCCCCCHHEECCEEEEHHHHHHHHCCCEEEEECCCCCCCCCEEEEECCCCCCEE
FILAGKTNASNIIGIEIQKEIADMANRSIKYNNLQEKVKFIEGDLKNLKLLKDIEKVDVV
EEEECCCCCCCEEEEEEHHHHHHHHCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCEEE
TVNPPYKTQGTGIININDKNAISRHEICCTLDDVVKAAKVLLKDKGKLYMIHRPDRIVDI
ECCCCCCCCCCEEEEECCCCCCCHHHEEECHHHHHHHHHHHHHCCCCEEEEECCHHHHHH
MNVMRKYYIEPKLIRTIHPAVDKAPSMILIEGQKNGGKFLKWDRPLYIYDENNKYTNEVK
HHHHHHHCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCEEEECCCEEEEECCCCHHHHHH
RIYGME
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]