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The map label for this gene is rhaR [C]

Identifier: 226225400

GI number: 226225400

Start: 2908215

End: 2909195

Strand: Direct

Name: rhaR [C]

Synonym: Lm4b_02823

Alternate gene names: 226225400

Gene position: 2908215-2909195 (Clockwise)

Preceding gene: 226225394

Following gene: NA

Centisome position: 99.85

GC content: 32.82

Gene sequence:

>981_bases
ATGGAAGCGCTTAATAAAAAATTATTTCGTCTAAATTCAAAAGAAAAAATCCAAAAAAGCACTGGCACTTTTGTTCCCGA
TTTACCCAATGGATCCTTTTTAAAAGAGAACGGCAGCATGGAATTATTAAATGATTATTTCTTCAAAAACAAAGACATTT
ATATAAGCAAACACAACCGATTTGCGGACTATCCTTATCATACACACCAATTTCTTGAGCTAAATTACATGTATTCAGGA
AGCTCCGAACAAGTCATTGAAGGAAATAAAGAAACTTTGCATGAAGGAGAACTTTTACTTTTAGACAGTGGCTGCCATCA
TTCCATCAAAGCAACAGGCGAAAAAGACATTCTCATCAACATCCTTTTCCGTGACCAACAAATCAGCCTAGAATGGCTAA
CGAGTATAAAGAAAAAAAACAGCCTTCTATTCGACTTTCTTCTTCATTCCAGCGTAAGCGAGCAATCTTTAAAGAAATAT
ATTATTTTTCAAAGTGCGCAAATTCCGCATATCCAACAAATTTTAAACCAAATTATCACAGAATATTTTTTAGAAGAAGA
ATTTTCATCAAGAATTATCACTCTTTATTTGCCAATTCTGTTCACTGAACTGGTACGTAAATGTGATACATATTTAGCTG
ATGATCTTACCAACTCACAATCAAGCACCACTTCCACCATGCTCGAAGTTATTAAGCTTATAGAATCCAACTATCGGACA
ATCACATTAACAAGTGCCGCGGATACATTAGGTTACAATAAAAATTACCTCAGTAACTTTATTAAAAAAAATACCAATTT
CACTTTTACCGAACTAGTCAATAAACAAAAAATGCTCGCAGCAAATCTTTTAATCGAAACCACTTCCACTCCAATTGAGT
TGATTATTGAAAAAGTTGGCTTTAGTAACAAGACTTACTTCTACTCCTTATACAAAAAAACATTCAATCTCTTACCCAAT
GAAGTAAGAAATAAAAAATAA

Upstream 100 bases:

>100_bases
TTAGTTAAGCGCTTACTTTATATTAAACAATTAATGATTGCGCTTTACAATATCCTGTGTTTATAATTAAAGTATCAAAT
TTACAGAAGGAGATTGTGAA

Downstream 100 bases:

>100_bases
GAGTACTGCATTAATCGCAGTACTCTTCTATTGTTTCACGTGAAACATTCTATTTATAAACAACCTCAAACTCTTCACAA
ACCACTAGAGCATCTTCTTC

Product: AraC-type regulatory protein

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; Transcriptional Regulator; Transcription Regulator; Helix-Turn-Helix Domain-Containing Protein; Regulatory Protein; AraC/XylS Family Transcriptional Regulator; 2-Isopropylmalate Synthase; Transcriptional Regulator -Type; Transcriptional Regulator Arac Family; Transcriptional Regulator-Type; Response Regulator Receiver; AraC-Type Regulatory Protein; Helix-Turn-Helix AraC-Type Trancriptional Regulator; Melibiose Operon Regulatory Protein; Arac Family Transcriptional Regulator

Number of amino acids: Translated: 326; Mature: 326

Protein sequence:

>326_residues
MEALNKKLFRLNSKEKIQKSTGTFVPDLPNGSFLKENGSMELLNDYFFKNKDIYISKHNRFADYPYHTHQFLELNYMYSG
SSEQVIEGNKETLHEGELLLLDSGCHHSIKATGEKDILINILFRDQQISLEWLTSIKKKNSLLFDFLLHSSVSEQSLKKY
IIFQSAQIPHIQQILNQIITEYFLEEEFSSRIITLYLPILFTELVRKCDTYLADDLTNSQSSTTSTMLEVIKLIESNYRT
ITLTSAADTLGYNKNYLSNFIKKNTNFTFTELVNKQKMLAANLLIETTSTPIELIIEKVGFSNKTYFYSLYKKTFNLLPN
EVRNKK

Sequences:

>Translated_326_residues
MEALNKKLFRLNSKEKIQKSTGTFVPDLPNGSFLKENGSMELLNDYFFKNKDIYISKHNRFADYPYHTHQFLELNYMYSG
SSEQVIEGNKETLHEGELLLLDSGCHHSIKATGEKDILINILFRDQQISLEWLTSIKKKNSLLFDFLLHSSVSEQSLKKY
IIFQSAQIPHIQQILNQIITEYFLEEEFSSRIITLYLPILFTELVRKCDTYLADDLTNSQSSTTSTMLEVIKLIESNYRT
ITLTSAADTLGYNKNYLSNFIKKNTNFTFTELVNKQKMLAANLLIETTSTPIELIIEKVGFSNKTYFYSLYKKTFNLLPN
EVRNKK
>Mature_326_residues
MEALNKKLFRLNSKEKIQKSTGTFVPDLPNGSFLKENGSMELLNDYFFKNKDIYISKHNRFADYPYHTHQFLELNYMYSG
SSEQVIEGNKETLHEGELLLLDSGCHHSIKATGEKDILINILFRDQQISLEWLTSIKKKNSLLFDFLLHSSVSEQSLKKY
IIFQSAQIPHIQQILNQIITEYFLEEEFSSRIITLYLPILFTELVRKCDTYLADDLTNSQSSTTSTMLEVIKLIESNYRT
ITLTSAADTLGYNKNYLSNFIKKNTNFTFTELVNKQKMLAANLLIETTSTPIELIIEKVGFSNKTYFYSLYKKTFNLLPN
EVRNKK

Specific function: Activator Of The L-Rhamnose Operon. Rhar Putatively Autoregulates Its Synthesis. [C]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 37856; Mature: 37856

Theoretical pI: Translated: 7.71; Mature: 7.71

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEALNKKLFRLNSKEKIQKSTGTFVPDLPNGSFLKENGSMELLNDYFFKNKDIYISKHNR
CCHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCEEECCCCHHHHHHHHHCCCCEEEEECCC
FADYPYHTHQFLELNYMYSGSSEQVIEGNKETLHEGELLLLDSGCHHSIKATGEKDILIN
CCCCCCCCEEEEEEEEEECCCCCHHHCCCHHHHCCCCEEEEECCCCCCEECCCCCCEEEE
ILFRDQQISLEWLTSIKKKNSLLFDFLLHSSVSEQSLKKYIIFQSAQIPHIQQILNQIIT
EEEECCCCCHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHH
EYFLEEEFSSRIITLYLPILFTELVRKCDTYLADDLTNSQSSTTSTMLEVIKLIESNYRT
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCE
ITLTSAADTLGYNKNYLSNFIKKNTNFTFTELVNKQKMLAANLLIETTSTPIELIIEKVG
EEEECCHHHCCCCHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHC
FSNKTYFYSLYKKTFNLLPNEVRNKK
CCCCHHHHHHHHHHHHHCCHHHCCCC
>Mature Secondary Structure
MEALNKKLFRLNSKEKIQKSTGTFVPDLPNGSFLKENGSMELLNDYFFKNKDIYISKHNR
CCHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCEEECCCCHHHHHHHHHCCCCEEEEECCC
FADYPYHTHQFLELNYMYSGSSEQVIEGNKETLHEGELLLLDSGCHHSIKATGEKDILIN
CCCCCCCCEEEEEEEEEECCCCCHHHCCCHHHHCCCCEEEEECCCCCCEECCCCCCEEEE
ILFRDQQISLEWLTSIKKKNSLLFDFLLHSSVSEQSLKKYIIFQSAQIPHIQQILNQIIT
EEEECCCCCHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHH
EYFLEEEFSSRIITLYLPILFTELVRKCDTYLADDLTNSQSSTTSTMLEVIKLIESNYRT
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCE
ITLTSAADTLGYNKNYLSNFIKKNTNFTFTELVNKQKMLAANLLIETTSTPIELIIEKVG
EEEECCHHHCCCCHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHC
FSNKTYFYSLYKKTFNLLPNEVRNKK
CCCCHHHHHHHHHHHHHCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA