Click here to switch to the map view.

The map label for this gene is rhaB [H]

Identifier: 226225398

GI number: 226225398

Start: 2905354

End: 2906805

Strand: Reverse

Name: rhaB [H]

Synonym: Lm4b_02821

Alternate gene names: 226225398

Gene position: 2906805-2905354 (Counterclockwise)

Preceding gene: 226225399

Following gene: 226225397

Centisome position: 99.8

GC content: 38.02

Gene sequence:

>1452_bases
GTGAAACATTATGTTGCAGTAGATATTGGTGCATCAAGTGGTCGATTAATTCTAGGGAAATTGGTGAATGAAAAATTACA
ATTAGAAGAAATTCACCGTTTTAAAAATGGTTTTACGTACCGAGATGGGCACGAACGCTGGGAAATTGATCAACTGATGC
AGGAAATCTTTATTGGCTTGGAAAAAGTAAAGCAACTAGGAATTTCGGAATGTGTGCTTGGTATTGACACGTGGGGCGTT
GACTATGTTTTGATAGGGGCTTCCGGTGAGAAGTTGGCAGATCCAATTAGTTACCGCGATAAACGAACTTTAAATGCGGT
GCAGAATTTAACGAGTGAGTATCCACGAGAATATATTTATAAAAAAACAGGTATTCAGTTTATGGAATTAAATACTCTAT
ATCAGCTGTACGTGGAAGAGCGAGATTTACTAGAACGAGCGGAGAAAATTTTGTTGATTCCTGACTATATTGGTTATGTT
CTCACGGGGGTTAAGGTGGCAGAAACAACAAATTCATCGACTACACAAATGCTTAACTTGCGAGAACAATTATTTGATAA
GGATTTACTTTCGCATTTGAACATTGATGTGGAAAAATTTGCGCCACTGACGGATGCAGGTACGTATTTAGGTAAAGTAA
AAGAGGAGTGGCTAGAGGAGTATGATATTCCTAATTGTGATGTAGTGACAGTGGCAACACATGATACAGCTTCGGCAGTG
GTGGGAACTCCGGCAGAAGGAGAAAATTGGGCATTCTTGAGTAGTGGGACTTGGTCGCTAATAGGGATGGAGCTAAGTGC
GCCAATTAATAACGAAGCAGCTTTTAAAGAAAATTACACGAATGAATGGGGCGCATATGGAACTTATCGCTTTTTAAAAA
ATATTATGGGGCTTTGGATTGTTCAAGAAATTGCGCGCATGGACGACTACAAGCATAGTTTTGCTGAGATGGCTGAGGAA
GCGAGTAATTATCCTTATTTCAAGCAAATTATTAATGTCAATGATGCCAGGTTTAATAACCCGGAAAACATGGTGGATGA
GATTAAATTGTATTGCCAAGAAACTGGACAAACTATACCGGAGACGATTGGAGAACTGACAAATTGTGTGTATGGAAGTC
TGGCACTCTATTATGCACTAGAATTGGAGAAAATGACTGAAATTACTGGTAAGAAAATCGAAAAACTTTATATTGTTGGT
GGAGGAAGTAATGTAGCTATGCTAAATCAATTAACAGCTAAACTTGCAGGGATAGAAGTATTTGCGGGACCTTCTGAAGC
AACGGCGATTGGAAATTTAGTTGTACAAATGATTAATCAAGGTGAAATCGAATCTATGCGTGCGGGAAGAAAAATTATTC
GAAATTCATTTGAAATTGGCGAATTTTCTTGTGGTGATGTGAGATTTGAGGAAATAAAAGAAAGATTTACTAAGGTACTT
GAATTTAATTAG

Upstream 100 bases:

>100_bases
CGGTGTAATTTGGGCGCCGAAAACACGTGGCAGATCACTTGATGATATTACGAAGGAACGTTACGGAAATACAATTGATT
AAAGAAAAGGAGCTAGACCA

Downstream 100 bases:

>100_bases
GAGGCTTTTAGAATGGGACAAGAAACAGAAATTAGTAAACGATACCAAGTGGCGAAAGAACGTTATCAAGCAATTGGAGT
TGATACGGAAAAAGCGCTTA

Product: rhamnulokinase

Products: NA

Alternate protein names: Rhamnulose kinase [H]

Number of amino acids: Translated: 483; Mature: 483

Protein sequence:

>483_residues
MKHYVAVDIGASSGRLILGKLVNEKLQLEEIHRFKNGFTYRDGHERWEIDQLMQEIFIGLEKVKQLGISECVLGIDTWGV
DYVLIGASGEKLADPISYRDKRTLNAVQNLTSEYPREYIYKKTGIQFMELNTLYQLYVEERDLLERAEKILLIPDYIGYV
LTGVKVAETTNSSTTQMLNLREQLFDKDLLSHLNIDVEKFAPLTDAGTYLGKVKEEWLEEYDIPNCDVVTVATHDTASAV
VGTPAEGENWAFLSSGTWSLIGMELSAPINNEAAFKENYTNEWGAYGTYRFLKNIMGLWIVQEIARMDDYKHSFAEMAEE
ASNYPYFKQIINVNDARFNNPENMVDEIKLYCQETGQTIPETIGELTNCVYGSLALYYALELEKMTEITGKKIEKLYIVG
GGSNVAMLNQLTAKLAGIEVFAGPSEATAIGNLVVQMINQGEIESMRAGRKIIRNSFEIGEFSCGDVRFEEIKERFTKVL
EFN

Sequences:

>Translated_483_residues
MKHYVAVDIGASSGRLILGKLVNEKLQLEEIHRFKNGFTYRDGHERWEIDQLMQEIFIGLEKVKQLGISECVLGIDTWGV
DYVLIGASGEKLADPISYRDKRTLNAVQNLTSEYPREYIYKKTGIQFMELNTLYQLYVEERDLLERAEKILLIPDYIGYV
LTGVKVAETTNSSTTQMLNLREQLFDKDLLSHLNIDVEKFAPLTDAGTYLGKVKEEWLEEYDIPNCDVVTVATHDTASAV
VGTPAEGENWAFLSSGTWSLIGMELSAPINNEAAFKENYTNEWGAYGTYRFLKNIMGLWIVQEIARMDDYKHSFAEMAEE
ASNYPYFKQIINVNDARFNNPENMVDEIKLYCQETGQTIPETIGELTNCVYGSLALYYALELEKMTEITGKKIEKLYIVG
GGSNVAMLNQLTAKLAGIEVFAGPSEATAIGNLVVQMINQGEIESMRAGRKIIRNSFEIGEFSCGDVRFEEIKERFTKVL
EFN
>Mature_483_residues
MKHYVAVDIGASSGRLILGKLVNEKLQLEEIHRFKNGFTYRDGHERWEIDQLMQEIFIGLEKVKQLGISECVLGIDTWGV
DYVLIGASGEKLADPISYRDKRTLNAVQNLTSEYPREYIYKKTGIQFMELNTLYQLYVEERDLLERAEKILLIPDYIGYV
LTGVKVAETTNSSTTQMLNLREQLFDKDLLSHLNIDVEKFAPLTDAGTYLGKVKEEWLEEYDIPNCDVVTVATHDTASAV
VGTPAEGENWAFLSSGTWSLIGMELSAPINNEAAFKENYTNEWGAYGTYRFLKNIMGLWIVQEIARMDDYKHSFAEMAEE
ASNYPYFKQIINVNDARFNNPENMVDEIKLYCQETGQTIPETIGELTNCVYGSLALYYALELEKMTEITGKKIEKLYIVG
GGSNVAMLNQLTAKLAGIEVFAGPSEATAIGNLVVQMINQGEIESMRAGRKIIRNSFEIGEFSCGDVRFEEIKERFTKVL
EFN

Specific function: Metabolism of L-rhamnose; second step. [C]

COG id: COG1070

COG function: function code G; Sugar (pentulose and hexulose) kinases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rhamnulokinase family [H]

Homologues:

Organism=Escherichia coli, GI1790338, Length=470, Percent_Identity=40.4255319148936, Blast_Score=358, Evalue=1e-100,
Organism=Escherichia coli, GI1789168, Length=429, Percent_Identity=25.8741258741259, Blast_Score=100, Evalue=3e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000577
- InterPro:   IPR018485
- InterPro:   IPR018484
- InterPro:   IPR013449 [H]

Pfam domain/function: PF02782 FGGY_C; PF00370 FGGY_N [H]

EC number: =2.7.1.5 [H]

Molecular weight: Translated: 54730; Mature: 54730

Theoretical pI: Translated: 4.47; Mature: 4.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHYVAVDIGASSGRLILGKLVNEKLQLEEIHRFKNGFTYRDGHERWEIDQLMQEIFIGL
CCEEEEEEECCCCCCCHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
EKVKQLGISECVLGIDTWGVDYVLIGASGEKLADPISYRDKRTLNAVQNLTSEYPREYIY
HHHHHCCHHHHHHCCCCCCCCEEEEECCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
KKTGIQFMELNTLYQLYVEERDLLERAEKILLIPDYIGYVLTGVKVAETTNSSTTQMLNL
HHCCCEEEEHHHHHHHHHHHHHHHHHHHHEEECHHHHHHHHHCCEEEECCCCHHHHHHHH
REQLFDKDLLSHLNIDVEKFAPLTDAGTYLGKVKEEWLEEYDIPNCDVVTVATHDTASAV
HHHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCE
VGTPAEGENWAFLSSGTWSLIGMELSAPINNEAAFKENYTNEWGAYGTYRFLKNIMGLWI
ECCCCCCCCEEEEECCCEEEEEEEECCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHH
VQEIARMDDYKHSFAEMAEEASNYPYFKQIINVNDARFNNPENMVDEIKLYCQETGQTIP
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHH
ETIGELTNCVYGSLALYYALELEKMTEITGKKIEKLYIVGGGSNVAMLNQLTAKLAGIEV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHHCEEE
FAGPSEATAIGNLVVQMINQGEIESMRAGRKIIRNSFEIGEFSCGDVRFEEIKERFTKVL
EECCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH
EFN
CCC
>Mature Secondary Structure
MKHYVAVDIGASSGRLILGKLVNEKLQLEEIHRFKNGFTYRDGHERWEIDQLMQEIFIGL
CCEEEEEEECCCCCCCHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
EKVKQLGISECVLGIDTWGVDYVLIGASGEKLADPISYRDKRTLNAVQNLTSEYPREYIY
HHHHHCCHHHHHHCCCCCCCCEEEEECCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
KKTGIQFMELNTLYQLYVEERDLLERAEKILLIPDYIGYVLTGVKVAETTNSSTTQMLNL
HHCCCEEEEHHHHHHHHHHHHHHHHHHHHEEECHHHHHHHHHCCEEEECCCCHHHHHHHH
REQLFDKDLLSHLNIDVEKFAPLTDAGTYLGKVKEEWLEEYDIPNCDVVTVATHDTASAV
HHHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCE
VGTPAEGENWAFLSSGTWSLIGMELSAPINNEAAFKENYTNEWGAYGTYRFLKNIMGLWI
ECCCCCCCCEEEEECCCEEEEEEEECCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHH
VQEIARMDDYKHSFAEMAEEASNYPYFKQIINVNDARFNNPENMVDEIKLYCQETGQTIP
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHH
ETIGELTNCVYGSLALYYALELEKMTEITGKKIEKLYIVGGGSNVAMLNQLTAKLAGIEV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHHCEEE
FAGPSEATAIGNLVVQMINQGEIESMRAGRKIIRNSFEIGEFSCGDVRFEEIKERFTKVL
EECCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH
EFN
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11679669 [H]