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The map label for this gene is ycjN [H]

Identifier: 226225389

GI number: 226225389

Start: 2894264

End: 2895556

Strand: Reverse

Name: ycjN [H]

Synonym: Lm4b_02812

Alternate gene names: 226225389

Gene position: 2895556-2894264 (Counterclockwise)

Preceding gene: 226225390

Following gene: 226225388

Centisome position: 99.41

GC content: 36.43

Gene sequence:

>1293_bases
ATGAAGAAAAAGAGTCTTGTATTACTTGTTGTTGTGTTGGTTCTAAGTGCGGTTCTAGCTGCATGTGGAGGGAAAGAGTC
TAGTAGTAAGGAAGTAACGATTGAATTTATGCATTCATCCGTTGAAAAAGAGCGTTTAGATGTTATTAATAAATTAATTG
CTGATTTTGAAAAAGAAAATCCAACAATCAAAATCAAACAAATTCCAGTTGAAGAAGATGCGTTTAATACAAAAGTTGTC
ACACTTGCTCGCTCTGGTAAACTTCCAGCAGTTATGGAAGTAAGCCAAGATTTTGCCAAAGTAATGGATAAAGATGAGTT
GATTGACCAAGATGCAGTGAAAGAAGTTATCGACTCGGTTGGAGAAGACAAATACTACGAAGGTGCAACAAACTTAGTAC
GTTCTGAAGATGGTAAAAGCTATATCGCAGCACCATTAAGCGGTTGGGTTCAAGGTATTTGGTACAACAAAAAAGCTTTA
GCCGATGCTGGTTTTGAAGAACCTAAAAACTGGGCGGATATTGAAAAAGTAGCGAAAAAATTCACAAATAAAGCAGATAA
AAAATACGGTATTGCAATTCCAACAGCAGAAAGCACGATGAGTGAGCAAGCTTTCTCCCAATTTGCACTTTCTAATAAAG
CCAATGTTTTAGATGCAAAAGGTAATGTAACGATTGATACACCAGAAATGAAAGAAGCACTTCAATATTATAAAGATTTG
TCAGCATACACGATGCCTGGTTCAAATGATGTAACTGAAATTAAAGATGCATTTATGAATGGAACAGTTCCGATGGCAAT
GTACTCTACGTATATCCTTCCATCTGTTTATGAAGAAGGCGATCCAAAAAATATCGGTTTCGCAATTCCAGAAGAAAAAG
AAAAAGCAGTTTATGGTACAGTTTCTGGTTTAACTATTTCAGCAGGACTTGATGATGAGCAAAAGAAAGCAACGAAGAAA
TTTGTTGAATACTTGTCTCAACCAGAAAATATGGCAACTTGGGTATTAATGTCTCCAGGTGGAGCGCAACCAGTAAATAA
AGAAGTAGTAGAACAAAAAGCATACAAAGAAAATGAAGTAATTAAATCGTTTGGTGAACTTCCAAATGAAATCGCAGCAT
CATTCAATGACATCCAAGTTTTCGGACTTGTTGACGGTAAAAACCTTACAAAAATGGGAGATATTACTAGCTCAGGCATT
ATCGCACAGATGGTTAATAACGTAACTGTTGGCGGTGGCGATGTATCAGCGGACTTAAAAGCTGCACAGAAAAAAGCTGA
AGAAGGTAAATAA

Upstream 100 bases:

>100_bases
ATCTTTATACGGGCTCCACAGTAACTGGGAGCGATTCCATAAAGCTTAGTGGCTATGAATTCTGCTGGCTAAAAACCAAA
AATTACAGGGAGGAACAAAA

Downstream 100 bases:

>100_bases
TCAAATAGCGGGGAGTTGAGTCTCCCCGTCTTTTTTAACAGTTTAGTACGTCGCTTTTTGATTTAAGGAGGCATTATGAA
AACGAAAGTATATAAAAGGT

Product: sugar binding protein (ABC transporter)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 430; Mature: 430

Protein sequence:

>430_residues
MKKKSLVLLVVVLVLSAVLAACGGKESSSKEVTIEFMHSSVEKERLDVINKLIADFEKENPTIKIKQIPVEEDAFNTKVV
TLARSGKLPAVMEVSQDFAKVMDKDELIDQDAVKEVIDSVGEDKYYEGATNLVRSEDGKSYIAAPLSGWVQGIWYNKKAL
ADAGFEEPKNWADIEKVAKKFTNKADKKYGIAIPTAESTMSEQAFSQFALSNKANVLDAKGNVTIDTPEMKEALQYYKDL
SAYTMPGSNDVTEIKDAFMNGTVPMAMYSTYILPSVYEEGDPKNIGFAIPEEKEKAVYGTVSGLTISAGLDDEQKKATKK
FVEYLSQPENMATWVLMSPGGAQPVNKEVVEQKAYKENEVIKSFGELPNEIAASFNDIQVFGLVDGKNLTKMGDITSSGI
IAQMVNNVTVGGGDVSADLKAAQKKAEEGK

Sequences:

>Translated_430_residues
MKKKSLVLLVVVLVLSAVLAACGGKESSSKEVTIEFMHSSVEKERLDVINKLIADFEKENPTIKIKQIPVEEDAFNTKVV
TLARSGKLPAVMEVSQDFAKVMDKDELIDQDAVKEVIDSVGEDKYYEGATNLVRSEDGKSYIAAPLSGWVQGIWYNKKAL
ADAGFEEPKNWADIEKVAKKFTNKADKKYGIAIPTAESTMSEQAFSQFALSNKANVLDAKGNVTIDTPEMKEALQYYKDL
SAYTMPGSNDVTEIKDAFMNGTVPMAMYSTYILPSVYEEGDPKNIGFAIPEEKEKAVYGTVSGLTISAGLDDEQKKATKK
FVEYLSQPENMATWVLMSPGGAQPVNKEVVEQKAYKENEVIKSFGELPNEIAASFNDIQVFGLVDGKNLTKMGDITSSGI
IAQMVNNVTVGGGDVSADLKAAQKKAEEGK
>Mature_430_residues
MKKKSLVLLVVVLVLSAVLAACGGKESSSKEVTIEFMHSSVEKERLDVINKLIADFEKENPTIKIKQIPVEEDAFNTKVV
TLARSGKLPAVMEVSQDFAKVMDKDELIDQDAVKEVIDSVGEDKYYEGATNLVRSEDGKSYIAAPLSGWVQGIWYNKKAL
ADAGFEEPKNWADIEKVAKKFTNKADKKYGIAIPTAESTMSEQAFSQFALSNKANVLDAKGNVTIDTPEMKEALQYYKDL
SAYTMPGSNDVTEIKDAFMNGTVPMAMYSTYILPSVYEEGDPKNIGFAIPEEKEKAVYGTVSGLTISAGLDDEQKKATKK
FVEYLSQPENMATWVLMSPGGAQPVNKEVVEQKAYKENEVIKSFGELPNEIAASFNDIQVFGLVDGKNLTKMGDITSSGI
IAQMVNNVTVGGGDVSADLKAAQKKAEEGK

Specific function: Probably part of the binding-protein-dependent transport system ycjNOP [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

Organism=Escherichia coli, GI1787569, Length=425, Percent_Identity=58.5882352941177, Blast_Score=539, Evalue=1e-154,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 46918; Mature: 46918

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKSLVLLVVVLVLSAVLAACGGKESSSKEVTIEFMHSSVEKERLDVINKLIADFEKEN
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCC
PTIKIKQIPVEEDAFNTKVVTLARSGKLPAVMEVSQDFAKVMDKDELIDQDAVKEVIDSV
CEEEEEECCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCHHHHCCHHHHHHHHHHC
GEDKYYEGATNLVRSEDGKSYIAAPLSGWVQGIWYNKKALADAGFEEPKNWADIEKVAKK
CCCCHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHCCHHHHHCCCCCCCCCHHHHHHHHHH
FTNKADKKYGIAIPTAESTMSEQAFSQFALSNKANVLDAKGNVTIDTPEMKEALQYYKDL
HHHHCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCEEECCCCEEECCHHHHHHHHHHHHC
SAYTMPGSNDVTEIKDAFMNGTVPMAMYSTYILPSVYEEGDPKNIGFAIPEEKEKAVYGT
CCEECCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEE
VSGLTISAGLDDEQKKATKKFVEYLSQPENMATWVLMSPGGAQPVNKEVVEQKAYKENEV
ECCEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHH
IKSFGELPNEIAASFNDIQVFGLVDGKNLTKMGDITSSGIIAQMVNNVTVGGGDVSADLK
HHHHHCCHHHHHCCCCCEEEEEEECCCCCCHHCCCCCCHHHHHHHHCCEECCCCCCHHHH
AAQKKAEEGK
HHHHHHCCCC
>Mature Secondary Structure
MKKKSLVLLVVVLVLSAVLAACGGKESSSKEVTIEFMHSSVEKERLDVINKLIADFEKEN
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCC
PTIKIKQIPVEEDAFNTKVVTLARSGKLPAVMEVSQDFAKVMDKDELIDQDAVKEVIDSV
CEEEEEECCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCHHHHCCHHHHHHHHHHC
GEDKYYEGATNLVRSEDGKSYIAAPLSGWVQGIWYNKKALADAGFEEPKNWADIEKVAKK
CCCCHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHCCHHHHHCCCCCCCCCHHHHHHHHHH
FTNKADKKYGIAIPTAESTMSEQAFSQFALSNKANVLDAKGNVTIDTPEMKEALQYYKDL
HHHHCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCEEECCCCEEECCHHHHHHHHHHHHC
SAYTMPGSNDVTEIKDAFMNGTVPMAMYSTYILPSVYEEGDPKNIGFAIPEEKEKAVYGT
CCEECCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEE
VSGLTISAGLDDEQKKATKKFVEYLSQPENMATWVLMSPGGAQPVNKEVVEQKAYKENEV
ECCEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHH
IKSFGELPNEIAASFNDIQVFGLVDGKNLTKMGDITSSGIIAQMVNNVTVGGGDVSADLK
HHHHHCCHHHHHCCCCCEEEEEEECCCCCCHHCCCCCCHHHHHHHHCCEECCCCCCHHHH
AAQKKAEEGK
HHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]