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The map label for this gene is ycfX [C]

Identifier: 226225346

GI number: 226225346

Start: 2850561

End: 2851466

Strand: Reverse

Name: ycfX [C]

Synonym: Lm4b_02769

Alternate gene names: 226225346

Gene position: 2851466-2850561 (Counterclockwise)

Preceding gene: 226225347

Following gene: 226225345

Centisome position: 97.9

GC content: 43.16

Gene sequence:

>906_bases
ATGGAAAATTATCTTTGTGTCGACATTGGTGGAACGAGTATCAAATATGCTAAATTTAATCAAGAAGGTAAGCGGGTGGG
CGATCTTAAGTCTTGTGTGACGCCTATAACTGGCGGAGCGAATCAAATCATGCCCGCGCTTATTCGGATTGTCGAACAAG
AAAAAACGAATGTAGCGGGCGTCTGTGTGGCCTCTGCGGGTGTTGTGGATTCTGTGAAAGGCAAAATTATTTATGCTGGC
TACACGATTCCTAAATACACTGGAACTGAAATAAAAGCAGAACTAGAGCACCGATTTCATCTTCCGTGCGCAGTGGAAAA
TGACGTAAATGCAGCCTGCCTTGGCGAGTTTTGGTTGGGTGGAGCACGGGGGCGTGGGAGCGTGCTCTGTTTGACAATTG
GAACCGGAATCGGCGGAGCAATGTTACTAAACGACAAACTAATAAATGGATCGTCTTTTACAGCATGTGAAGTGGGCTAT
ATGCACCTTTCACAAGGGAGATTTCAAGATGTTGCTTCAACAAAAGCATTGATTAAACAAGTAGCCTCGCGAAAAAATAT
CGAGGAAAATGCGTTAAATGGTCGTCAAGTCATGGAATGGGCCTATAGCGGAGATGCAGATGTGCTGGCTGAAATAGAGC
AATGGATTGAGAATTTAGTCGAAGGTGTAGTAAACTTAATCTATATTTTCAACCCAGAAGTGATTGTACTCGGTGGCGGA
TTAATGGAAGAAGAGTCATTCTTCAAACCGCGTCTAAAAGCGGCTATCTCAACCAAATTAATCTCACCGATGTTCGATAC
AGCAGATATTACTTTCGCAAAGCTGGGAAATGAAGCAGGGATGATTGGTGCGCTTTATCATTTCTTAAACCAGAAAGAGG
CCGAAAAAGATGACGATTTTAAATGA

Upstream 100 bases:

>100_bases
CGAGGAAAAGGTAACCCGTTTGATCGAAGCAAATTCAAGCCAAGCGTTTTACGATGAGTTAACAAAAGAAGGATAATAAT
TTCACTAAAGAGGTGAAGAA

Downstream 100 bases:

>100_bases
AATCCAACAAAATTACAATCGATTACCGAATAAAGAAAAACAAATTGCGAAGTATATTTTAGAAAAAAGTGATGAACTCA
AGAATATTAATATTAAAGAG

Product: transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MENYLCVDIGGTSIKYAKFNQEGKRVGDLKSCVTPITGGANQIMPALIRIVEQEKTNVAGVCVASAGVVDSVKGKIIYAG
YTIPKYTGTEIKAELEHRFHLPCAVENDVNAACLGEFWLGGARGRGSVLCLTIGTGIGGAMLLNDKLINGSSFTACEVGY
MHLSQGRFQDVASTKALIKQVASRKNIEENALNGRQVMEWAYSGDADVLAEIEQWIENLVEGVVNLIYIFNPEVIVLGGG
LMEEESFFKPRLKAAISTKLISPMFDTADITFAKLGNEAGMIGALYHFLNQKEAEKDDDFK

Sequences:

>Translated_301_residues
MENYLCVDIGGTSIKYAKFNQEGKRVGDLKSCVTPITGGANQIMPALIRIVEQEKTNVAGVCVASAGVVDSVKGKIIYAG
YTIPKYTGTEIKAELEHRFHLPCAVENDVNAACLGEFWLGGARGRGSVLCLTIGTGIGGAMLLNDKLINGSSFTACEVGY
MHLSQGRFQDVASTKALIKQVASRKNIEENALNGRQVMEWAYSGDADVLAEIEQWIENLVEGVVNLIYIFNPEVIVLGGG
LMEEESFFKPRLKAAISTKLISPMFDTADITFAKLGNEAGMIGALYHFLNQKEAEKDDDFK
>Mature_301_residues
MENYLCVDIGGTSIKYAKFNQEGKRVGDLKSCVTPITGGANQIMPALIRIVEQEKTNVAGVCVASAGVVDSVKGKIIYAG
YTIPKYTGTEIKAELEHRFHLPCAVENDVNAACLGEFWLGGARGRGSVLCLTIGTGIGGAMLLNDKLINGSSFTACEVGY
MHLSQGRFQDVASTKALIKQVASRKNIEENALNGRQVMEWAYSGDADVLAEIEQWIENLVEGVVNLIYIFNPEVIVLGGG
LMEEESFFKPRLKAAISTKLISPMFDTADITFAKLGNEAGMIGALYHFLNQKEAEKDDDFK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ROK (nagC/xylR) family [H]

Homologues:

Organism=Homo sapiens, GI298566325, Length=263, Percent_Identity=26.9961977186312, Blast_Score=69, Evalue=8e-12,
Organism=Homo sapiens, GI190014632, Length=263, Percent_Identity=26.9961977186312, Blast_Score=68, Evalue=8e-12,
Organism=Homo sapiens, GI4885285, Length=263, Percent_Identity=26.9961977186312, Blast_Score=68, Evalue=8e-12,
Organism=Homo sapiens, GI298566315, Length=263, Percent_Identity=26.9961977186312, Blast_Score=68, Evalue=9e-12,
Organism=Escherichia coli, GI1787363, Length=312, Percent_Identity=25.6410256410256, Blast_Score=86, Evalue=2e-18,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000600 [H]

Pfam domain/function: PF00480 ROK [H]

EC number: NA

Molecular weight: Translated: 32630; Mature: 32630

Theoretical pI: Translated: 4.95; Mature: 4.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENYLCVDIGGTSIKYAKFNQEGKRVGDLKSCVTPITGGANQIMPALIRIVEQEKTNVAG
CCCEEEEEECCCEEEEEEECCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEE
VCVASAGVVDSVKGKIIYAGYTIPKYTGTEIKAELEHRFHLPCAVENDVNAACLGEFWLG
EEEECCCCHHCCCCEEEEEEECCCCCCCCHHHEEHHHHCCCCEEECCCCCHHEEHHHHCC
GARGRGSVLCLTIGTGIGGAMLLNDKLINGSSFTACEVGYMHLSQGRFQDVASTKALIKQ
CCCCCCCEEEEEECCCCCCEEEEECEEECCCCCCEEEECCEECCCCCHHHHHHHHHHHHH
VASRKNIEENALNGRQVMEWAYSGDADVLAEIEQWIENLVEGVVNLIYIFNPEVIVLGGG
HHHHCCCHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHEEEEECCCEEEEECC
LMEEESFFKPRLKAAISTKLISPMFDTADITFAKLGNEAGMIGALYHFLNQKEAEKDDDF
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHCCCCCCHHHHHHHHHCHHCCCCCCCC
K
C
>Mature Secondary Structure
MENYLCVDIGGTSIKYAKFNQEGKRVGDLKSCVTPITGGANQIMPALIRIVEQEKTNVAG
CCCEEEEEECCCEEEEEEECCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEE
VCVASAGVVDSVKGKIIYAGYTIPKYTGTEIKAELEHRFHLPCAVENDVNAACLGEFWLG
EEEECCCCHHCCCCEEEEEEECCCCCCCCHHHEEHHHHCCCCEEECCCCCHHEEHHHHCC
GARGRGSVLCLTIGTGIGGAMLLNDKLINGSSFTACEVGYMHLSQGRFQDVASTKALIKQ
CCCCCCCEEEEEECCCCCCEEEEECEEECCCCCCEEEECCEECCCCCHHHHHHHHHHHHH
VASRKNIEENALNGRQVMEWAYSGDADVLAEIEQWIENLVEGVVNLIYIFNPEVIVLGGG
HHHHCCCHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHEEEEECCCEEEEECC
LMEEESFFKPRLKAAISTKLISPMFDTADITFAKLGNEAGMIGALYHFLNQKEAEKDDDF
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHCCCCCCHHHHHHHHHCHHCCCCCCCC
K
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11792842; 8177218 [H]