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The map label for this gene is yfeT [C]

Identifier: 226225345

GI number: 226225345

Start: 2849771

End: 2850577

Strand: Reverse

Name: yfeT [C]

Synonym: Lm4b_02768

Alternate gene names: 226225345

Gene position: 2850577-2849771 (Counterclockwise)

Preceding gene: 226225346

Following gene: 226225344

Centisome position: 97.87

GC content: 37.79

Gene sequence:

>807_bases
ATGACGATTTTAAATGAAATCCAACAAAATTACAATCGATTACCGAATAAAGAAAAACAAATTGCGAAGTATATTTTAGA
AAAAAGTGATGAACTCAAGAATATTAATATTAAAGAGCTAGCTGAAGAAACTGGCACATCCATTTCGACGATAACGAGAT
TTTGTCGCCATGTACGCTGTGATAGTTTTGTGGATTTGAAAATGCGGGTGAATACTGCAGCGACAATGGTTCCGTCACTT
GGTTATGATGACCTTTTTGAAGAGGTTTATTCGTTCTACCATAAAGTAATTGATAACACGGTGAAGCTGATTGAACCAGC
GAAGATCCGTGAAGTGGTGCAGTACATTCAAGAAGCTAAGCGAGTCTATATTTGCGGCGTCGGAAGTTCGGGGCTCACTG
CCGTTGAAATGTCGCAGCGCCTTATTCGAATGGGGTTAAACGTCATCAGTGTCAACGATCCGCATATGATGATTATCACT
AGCTCCATCACAACAAAAGAAGATTTTGTTATCGGCATTTCCAATTCAGGTAACACCCCAGAGCTAGTCACGGCGCTAAA
AATCGCTAAGAAAAACAAAAGTAAAGTTGCTACATTTACCAGTTTTGAAAATAGTGAAATGACCGAAATCAGTGACGTCA
CTATTCCGGTTTACAATACTTTATTCGTAAGTAAAAGGTATTTTGCTAATAGCCAGTTTTCGATTATGTATGTGATGGAT
ATTATTTCCATGATGTTGCTACAAAATGAGTCTTACCGCGACAATATGGAAAAAACCATCAATACCGTTACCGATGAATT
TCATTAA

Upstream 100 bases:

>100_bases
ATGTTCGATACAGCAGATATTACTTTCGCAAAGCTGGGAAATGAAGCAGGGATGATTGGTGCGCTTTATCATTTCTTAAA
CCAGAAAGAGGCCGAAAAAG

Downstream 100 bases:

>100_bases
GAAAATAGATAGGACTGTGAAACTTTAGCAGCTCTATCTATTTTTTCACATTTAAAGGACAGAATAAGCGTGTTTTTCTC
TAGCATTTCTGCTAAAATAG

Product: RpiR transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 267

Protein sequence:

>268_residues
MTILNEIQQNYNRLPNKEKQIAKYILEKSDELKNINIKELAEETGTSISTITRFCRHVRCDSFVDLKMRVNTAATMVPSL
GYDDLFEEVYSFYHKVIDNTVKLIEPAKIREVVQYIQEAKRVYICGVGSSGLTAVEMSQRLIRMGLNVISVNDPHMMIIT
SSITTKEDFVIGISNSGNTPELVTALKIAKKNKSKVATFTSFENSEMTEISDVTIPVYNTLFVSKRYFANSQFSIMYVMD
IISMMLLQNESYRDNMEKTINTVTDEFH

Sequences:

>Translated_268_residues
MTILNEIQQNYNRLPNKEKQIAKYILEKSDELKNINIKELAEETGTSISTITRFCRHVRCDSFVDLKMRVNTAATMVPSL
GYDDLFEEVYSFYHKVIDNTVKLIEPAKIREVVQYIQEAKRVYICGVGSSGLTAVEMSQRLIRMGLNVISVNDPHMMIIT
SSITTKEDFVIGISNSGNTPELVTALKIAKKNKSKVATFTSFENSEMTEISDVTIPVYNTLFVSKRYFANSQFSIMYVMD
IISMMLLQNESYRDNMEKTINTVTDEFH
>Mature_267_residues
TILNEIQQNYNRLPNKEKQIAKYILEKSDELKNINIKELAEETGTSISTITRFCRHVRCDSFVDLKMRVNTAATMVPSLG
YDDLFEEVYSFYHKVIDNTVKLIEPAKIREVVQYIQEAKRVYICGVGSSGLTAVEMSQRLIRMGLNVISVNDPHMMIITS
SITTKEDFVIGISNSGNTPELVTALKIAKKNKSKVATFTSFENSEMTEISDVTIPVYNTLFVSKRYFANSQFSIMYVMDI
ISMMLLQNESYRDNMEKTINTVTDEFH

Specific function: Unknown

COG id: COG1737

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI1788767, Length=278, Percent_Identity=24.1007194244604, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI87082130, Length=215, Percent_Identity=26.5116279069767, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1788159, Length=280, Percent_Identity=22.5, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI87082369, Length=263, Percent_Identity=21.6730038022814, Blast_Score=72, Evalue=6e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000281
- InterPro:   IPR001347
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01418 HTH_6; PF01380 SIS [H]

EC number: NA

Molecular weight: Translated: 30643; Mature: 30512

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: PS51071 HTH_RPIR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTILNEIQQNYNRLPNKEKQIAKYILEKSDELKNINIKELAEETGTSISTITRFCRHVRC
CCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCC
DSFVDLKMRVNTAATMVPSLGYDDLFEEVYSFYHKVIDNTVKLIEPAKIREVVQYIQEAK
CCEEEEEEEECHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
RVYICGVGSSGLTAVEMSQRLIRMGLNVISVNDPHMMIITSSITTKEDFVIGISNSGNTP
EEEEEECCCCCCHHHHHHHHHHHHCCEEEEECCCEEEEEECCCCCCCCEEEEECCCCCCH
ELVTALKIAKKNKSKVATFTSFENSEMTEISDVTIPVYNTLFVSKRYFANSQFSIMYVMD
HHHHHHHHHHCCCCCEEEEECCCCCCCCCHHCEEEHHHHHHHHHHHHHCCCCCHHHHHHH
IISMMLLQNESYRDNMEKTINTVTDEFH
HHHHHHHCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TILNEIQQNYNRLPNKEKQIAKYILEKSDELKNINIKELAEETGTSISTITRFCRHVRC
CHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCC
DSFVDLKMRVNTAATMVPSLGYDDLFEEVYSFYHKVIDNTVKLIEPAKIREVVQYIQEAK
CCEEEEEEEECHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
RVYICGVGSSGLTAVEMSQRLIRMGLNVISVNDPHMMIITSSITTKEDFVIGISNSGNTP
EEEEEECCCCCCHHHHHHHHHHHHCCEEEEECCCEEEEEECCCCCCCCEEEEECCCCCCH
ELVTALKIAKKNKSKVATFTSFENSEMTEISDVTIPVYNTLFVSKRYFANSQFSIMYVMD
HHHHHHHHHHCCCCCEEEEECCCCCCCCCHHCEEEHHHHHHHHHHHHHCCCCCHHHHHHH
IISMMLLQNESYRDNMEKTINTVTDEFH
HHHHHHHCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]