BacMap

Definition	Listeria monocytogenes Clip81459, complete genome.
Accession	NC_012488
Length	2,912,690

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The map label for this gene is ytrB [H]

Identifier: 226225321

GI number: 226225321

Start: 2822089

End: 2822976

Strand: Reverse

Name: ytrB [H]

Synonym: Lm4b_02744

Alternate gene names: 226225321

Gene position: 2822976-2822089 (Counterclockwise)

Preceding gene: 226225323

Following gene: 226225320

Centisome position: 96.92

GC content: 36.6

Gene sequence:

>888_bases
ATGAAAATTCGGAACTTAACTAAAAAGATGGACGATAACTTGGTTTTGAAGGATGTTTCATTTGATTTAAAAGCAGGGGA
GATTACTGCATTAATTGGCCGCAATGGCGTTGGGAAAACAACTCTATTTTCAACGATGACGGGAATTTATTTGCCTGATG
AGGGCGATGTTTTCTTAGGTGAAGAGAGTATTTTTAAGCACCCGGAAGTGAAGCAACAGCTGTTTTTCTTGGAAGATAAT
ATGAATCATTTTAATACATATAGTGTACAGACGGTTGTTAAGATATATCGACAAATTTATACGACTTTTGATGAGGCTTT
TTTTAATGAATTAATGCAGCGATTTGAACTGCCAATGAAGGCTAAGTTAATGTCTTTTTCAAAGGGACGGAAAGCCTTAT
TTTTTATTATTTTAGCTGTTTCACTTAATGTTCGATTCTTGCTGCTAGATGAACCGATGGATGGGCTAGATATCATTATT
AAAAAGCAGATTTTAGCAACGATAAAGGACACGGTGAAAAAACGAGGAACAAGTGTAGTGATTGCGTCTCATCGTTTGGA
AGAACTCGAGGCTATTGCGGATCGAGTGATTGTTCTAAAGGGCGCGAGCGTGGAACTGGATTATTATTTAGAAGATATGC
GGACCGATGCGGTGAAAATACAAGTTGCATTTAAAACGAAAAAAATACCTGATTTTGTGAAAAATAACGCGCAATTATTG
TATCGTAATGGGCGGATTTACACGCTTCTAGTGACTGAAAATGCTAGCAGTTTTCTTGCCGAATTGCGTTTAGAAGAACC
GGTTTTGCTAGAAGAAATGTCGATCTCGATAGAAGACATTTTCACGGTGCATTTAGCAAATGATAAAATAGATTATTACG
AGATTTAA

Upstream 100 bases:

>100_bases
ATGATTGGTTTGTAACTTTTTATAGCGAATTGGTAGAAAATTTTTAAAAATGTAGAAAAAATATTCCGGAGCTTATATAA
TGAGTGAAAGAGGTGGAATA

Downstream 100 bases:

>100_bases
AACAGACAGGAGGGACAAGGCTAATAATGTTTAATCGAGGTTTATGGTACCGAGAATGGCGTAATATGAGATGGATGCTT
TTGGGTGTTGTGATACTATT

Product: ABC transporter, ATP-binding protein

Products: ADP; phosphate; iron dicitrate [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MKIRNLTKKMDDNLVLKDVSFDLKAGEITALIGRNGVGKTTLFSTMTGIYLPDEGDVFLGEESIFKHPEVKQQLFFLEDN
MNHFNTYSVQTVVKIYRQIYTTFDEAFFNELMQRFELPMKAKLMSFSKGRKALFFIILAVSLNVRFLLLDEPMDGLDIII
KKQILATIKDTVKKRGTSVVIASHRLEELEAIADRVIVLKGASVELDYYLEDMRTDAVKIQVAFKTKKIPDFVKNNAQLL
YRNGRIYTLLVTENASSFLAELRLEEPVLLEEMSISIEDIFTVHLANDKIDYYEI

Sequences:

>Translated_295_residues
MKIRNLTKKMDDNLVLKDVSFDLKAGEITALIGRNGVGKTTLFSTMTGIYLPDEGDVFLGEESIFKHPEVKQQLFFLEDN
MNHFNTYSVQTVVKIYRQIYTTFDEAFFNELMQRFELPMKAKLMSFSKGRKALFFIILAVSLNVRFLLLDEPMDGLDIII
KKQILATIKDTVKKRGTSVVIASHRLEELEAIADRVIVLKGASVELDYYLEDMRTDAVKIQVAFKTKKIPDFVKNNAQLL
YRNGRIYTLLVTENASSFLAELRLEEPVLLEEMSISIEDIFTVHLANDKIDYYEI
>Mature_295_residues
MKIRNLTKKMDDNLVLKDVSFDLKAGEITALIGRNGVGKTTLFSTMTGIYLPDEGDVFLGEESIFKHPEVKQQLFFLEDN
MNHFNTYSVQTVVKIYRQIYTTFDEAFFNELMQRFELPMKAKLMSFSKGRKALFFIILAVSLNVRFLLLDEPMDGLDIII
KKQILATIKDTVKKRGTSVVIASHRLEELEAIADRVIVLKGASVELDYYLEDMRTDAVKIQVAFKTKKIPDFVKNNAQLL
YRNGRIYTLLVTENASSFLAELRLEEPVLLEEMSISIEDIFTVHLANDKIDYYEI

Specific function: Part of the ABC transporter complex YtrBCDEF that plays a role in acetoin utilization during stationary phase and sporulation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein; Cytoplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI153792144, Length=304, Percent_Identity=26.3157894736842, Blast_Score=79, Evalue=7e-15,
Organism=Homo sapiens, GI27881501, Length=228, Percent_Identity=25.8771929824561, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI30795238, Length=228, Percent_Identity=25.8771929824561, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI27262624, Length=228, Percent_Identity=28.0701754385965, Blast_Score=75, Evalue=7e-14,
Organism=Homo sapiens, GI27262626, Length=228, Percent_Identity=28.0701754385965, Blast_Score=75, Evalue=7e-14,
Organism=Homo sapiens, GI116734710, Length=215, Percent_Identity=23.7209302325581, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI27436953, Length=202, Percent_Identity=28.7128712871287, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI21536376, Length=208, Percent_Identity=23.5576923076923, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI45446740, Length=210, Percent_Identity=28.5714285714286, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI47078218, Length=210, Percent_Identity=28.5714285714286, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI6005701, Length=216, Percent_Identity=25.9259259259259, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI73747915, Length=200, Percent_Identity=26.5, Blast_Score=72, Evalue=9e-13,
Organism=Homo sapiens, GI27477115, Length=222, Percent_Identity=27.4774774774775, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI105990541, Length=305, Percent_Identity=24.9180327868852, Blast_Score=65, Evalue=8e-11,
Organism=Escherichia coli, GI1790739, Length=255, Percent_Identity=27.0588235294118, Blast_Score=88, Evalue=7e-19,
Organism=Escherichia coli, GI48995001, Length=214, Percent_Identity=29.4392523364486, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1789593, Length=211, Percent_Identity=31.2796208530806, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1786345, Length=211, Percent_Identity=25.1184834123223, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI87081791, Length=207, Percent_Identity=26.5700483091787, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1789962, Length=267, Percent_Identity=25.8426966292135, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI87081782, Length=209, Percent_Identity=28.7081339712919, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1790467, Length=224, Percent_Identity=24.1071428571429, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1790190, Length=212, Percent_Identity=25, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788761, Length=228, Percent_Identity=26.7543859649123, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1786698, Length=211, Percent_Identity=25.5924170616114, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1788225, Length=238, Percent_Identity=26.4705882352941, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1789891, Length=212, Percent_Identity=24.5283018867925, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1788472, Length=207, Percent_Identity=28.9855072463768, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1786803, Length=197, Percent_Identity=25.3807106598985, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787370, Length=215, Percent_Identity=26.046511627907, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1790525, Length=224, Percent_Identity=25.8928571428571, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788210, Length=213, Percent_Identity=26.7605633802817, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI48994943, Length=210, Percent_Identity=22.3809523809524, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI87081709, Length=234, Percent_Identity=22.2222222222222, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788053, Length=198, Percent_Identity=24.2424242424242, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787759, Length=215, Percent_Identity=25.5813953488372, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787143, Length=206, Percent_Identity=26.6990291262136, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI2367384, Length=213, Percent_Identity=25.8215962441315, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787500, Length=212, Percent_Identity=26.4150943396226, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI48994883, Length=210, Percent_Identity=22.3809523809524, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1786319, Length=206, Percent_Identity=26.2135922330097, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1788165, Length=201, Percent_Identity=27.363184079602, Blast_Score=62, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17565586, Length=233, Percent_Identity=21.8884120171674, Blast_Score=82, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI115533608, Length=209, Percent_Identity=29.1866028708134, Blast_Score=75, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17533971, Length=215, Percent_Identity=26.5116279069767, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17558664, Length=205, Percent_Identity=26.8292682926829, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI71992290, Length=206, Percent_Identity=26.6990291262136, Blast_Score=66, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6323959, Length=206, Percent_Identity=25.7281553398058, Blast_Score=63, Evalue=7e-11,
Organism=Drosophila melanogaster, GI24666092, Length=205, Percent_Identity=26.8292682926829, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI24643674, Length=205, Percent_Identity=25.3658536585366, Blast_Score=82, Evalue=6e-16,
Organism=Drosophila melanogaster, GI24648314, Length=213, Percent_Identity=26.2910798122066, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI116007184, Length=192, Percent_Identity=25.5208333333333, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI221500365, Length=192, Percent_Identity=25.5208333333333, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI28573573, Length=208, Percent_Identity=24.0384615384615, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI28573571, Length=208, Percent_Identity=24.0384615384615, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI221512771, Length=221, Percent_Identity=23.9819004524887, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24650853, Length=187, Percent_Identity=25.1336898395722, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24650855, Length=187, Percent_Identity=25.1336898395722, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI281362751, Length=191, Percent_Identity=25.6544502617801, Blast_Score=65, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 33920; Mature: 33920

Theoretical pI: Translated: 5.51; Mature: 5.51

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIRNLTKKMDDNLVLKDVSFDLKAGEITALIGRNGVGKTTLFSTMTGIYLPDEGDVFLG
CCCHHHHHHCCCCEEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHCCEEECCCCCEEEC
EESIFKHPEVKQQLFFLEDNMNHFNTYSVQTVVKIYRQIYTTFDEAFFNELMQRFELPMK
CHHHHCCCCHHHHEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
AKLMSFSKGRKALFFIILAVSLNVRFLLLDEPMDGLDIIIKKQILATIKDTVKKRGTSVV
HHHHHHCCCCHHHHHHEEEHHCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCEEE
IASHRLEELEAIADRVIVLKGASVELDYYLEDMRTDAVKIQVAFKTKKIPDFVKNNAQLL
EEHHHHHHHHHHHCEEEEEECCCEEEHHHHHHCCCCEEEEEEEEECCCCHHHHCCCCEEE
YRNGRIYTLLVTENASSFLAELRLEEPVLLEEMSISIEDIFTVHLANDKIDYYEI
EECCCEEEEEEECCHHHHHHHHCCCCCEEHHHHCCCEEHEEEEEEECCCEEEEEC
>Mature Secondary Structure
MKIRNLTKKMDDNLVLKDVSFDLKAGEITALIGRNGVGKTTLFSTMTGIYLPDEGDVFLG
CCCHHHHHHCCCCEEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHCCEEECCCCCEEEC
EESIFKHPEVKQQLFFLEDNMNHFNTYSVQTVVKIYRQIYTTFDEAFFNELMQRFELPMK
CHHHHCCCCHHHHEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
AKLMSFSKGRKALFFIILAVSLNVRFLLLDEPMDGLDIIIKKQILATIKDTVKKRGTSVV
HHHHHHCCCCHHHHHHEEEHHCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCEEE
IASHRLEELEAIADRVIVLKGASVELDYYLEDMRTDAVKIQVAFKTKKIPDFVKNNAQLL
EEHHHHHHHHHHHCEEEEEECCCEEEHHHHHHCCCCEEEEEEEEECCCCHHHHCCCCEEE
YRNGRIYTLLVTENASSFLAELRLEEPVLLEEMSISIEDIFTVHLANDKIDYYEI
EECCCEEEEEEECCHHHHHHHHCCCCCEEHHHHCCCEEHEEEEEEECCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; iron dicitrate [Periplasm]; H2O [C]

Specific reaction: ATP + iron dicitrate [Periplasm] + H2O = ADP + phosphate + iron dicitrate [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]