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The map label for this gene is rpe [H]

Identifier: 226225210

GI number: 226225210

Start: 2703854

End: 2704498

Strand: Reverse

Name: rpe [H]

Synonym: Lm4b_02632

Alternate gene names: 226225210

Gene position: 2704498-2703854 (Counterclockwise)

Preceding gene: 226225211

Following gene: 226225208

Centisome position: 92.85

GC content: 44.96

Gene sequence:

>645_bases
ATGACATTCGTAGCGCCATCATTACTCGCAGCTGATTATATGAACATGGCAAACTCCATTAAAGAAGCAGAACATGCCGG
AGCTGACTACCTTCATATCGATGTCATGGACGGACATTTTGTGCCGAATCTGACGTTTGGAATTGATATGGTCGAGCAAA
TCAAGAAAACAGCGACTATTCCACTGGATGTCCACTTAATGCTCTCGAACCCAGAAAACTATATTGAAAAATTTGCAGCA
GCTGGGGCGCACATTATTTCCGTGCATATCGAAGCGGCGCCGCACATCCACCGCGTCATTCAACAAATTAAGGCAGCGGG
CTGTAAAGCGGGAGTCGTGCTTAATCCAGGAACACCGGCGAGCGTGCTGGATGCCGTTTTAGCAGATGTAGATTTAGTTT
TACAAATGACCGTAAATCCAGGGTTTGGTGGACAAGCTTTCATTGATTCTACCATCAAAAACATGCGCTATCTGGATCAT
TGGCGCCGAGAAAATAACGGCAGCTATGTGATCGAAGTCGACGGTGGTGTAAATGCCGAAACCGCAGAAAAATGTAAGCA
AGCGGGCGTAGACGTTCTTGTAGCAGGCTCTTACTTCTTTAGAGCAGATGATAAAATTGCTTGTATTAAAGAATTAAAAG
CGTAA

Upstream 100 bases:

>100_bases
CATCTGCCCCTGCGAAAGATTTGTTTAACGCTTATGGATTTACACCAGAAAATGTGGCGGATCGTGTCGAAGCTGTGATT
GCGAAAGCCGGTGTGCGCGT

Downstream 100 bases:

>100_bases
CAAAAAAAGTGCTACAAACCAACTAGCGGTTTGTAGCACTTTTTTATGGAGTGGTTTAACTTCTTTTAAAGAAAAAGAAG
CTAGTAGATAACAACGTCAA

Product: ribulose-phosphate 3-epimerase

Products: NA

Alternate protein names: Pentose-5-phosphate 3-epimerase; PPE; R5P3E [H]

Number of amino acids: Translated: 214; Mature: 213

Protein sequence:

>214_residues
MTFVAPSLLAADYMNMANSIKEAEHAGADYLHIDVMDGHFVPNLTFGIDMVEQIKKTATIPLDVHLMLSNPENYIEKFAA
AGAHIISVHIEAAPHIHRVIQQIKAAGCKAGVVLNPGTPASVLDAVLADVDLVLQMTVNPGFGGQAFIDSTIKNMRYLDH
WRRENNGSYVIEVDGGVNAETAEKCKQAGVDVLVAGSYFFRADDKIACIKELKA

Sequences:

>Translated_214_residues
MTFVAPSLLAADYMNMANSIKEAEHAGADYLHIDVMDGHFVPNLTFGIDMVEQIKKTATIPLDVHLMLSNPENYIEKFAA
AGAHIISVHIEAAPHIHRVIQQIKAAGCKAGVVLNPGTPASVLDAVLADVDLVLQMTVNPGFGGQAFIDSTIKNMRYLDH
WRRENNGSYVIEVDGGVNAETAEKCKQAGVDVLVAGSYFFRADDKIACIKELKA
>Mature_213_residues
TFVAPSLLAADYMNMANSIKEAEHAGADYLHIDVMDGHFVPNLTFGIDMVEQIKKTATIPLDVHLMLSNPENYIEKFAAA
GAHIISVHIEAAPHIHRVIQQIKAAGCKAGVVLNPGTPASVLDAVLADVDLVLQMTVNPGFGGQAFIDSTIKNMRYLDHW
RRENNGSYVIEVDGGVNAETAEKCKQAGVDVLVAGSYFFRADDKIACIKELKA

Specific function: Unknown

COG id: COG0036

COG function: function code G; Pentose-5-phosphate-3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribulose-phosphate 3-epimerase family [H]

Homologues:

Organism=Homo sapiens, GI40385883, Length=212, Percent_Identity=40.0943396226415, Blast_Score=166, Evalue=1e-41,
Organism=Homo sapiens, GI219879828, Length=212, Percent_Identity=38.6792452830189, Blast_Score=158, Evalue=4e-39,
Organism=Homo sapiens, GI24307923, Length=168, Percent_Identity=33.3333333333333, Blast_Score=103, Evalue=2e-22,
Organism=Escherichia coli, GI1789788, Length=213, Percent_Identity=43.6619718309859, Blast_Score=182, Evalue=1e-47,
Organism=Escherichia coli, GI1790523, Length=195, Percent_Identity=42.5641025641026, Blast_Score=163, Evalue=8e-42,
Organism=Escherichia coli, GI1790754, Length=207, Percent_Identity=27.0531400966184, Blast_Score=92, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17552948, Length=216, Percent_Identity=39.8148148148148, Blast_Score=155, Evalue=1e-38,
Organism=Saccharomyces cerevisiae, GI6322341, Length=214, Percent_Identity=38.3177570093458, Blast_Score=154, Evalue=8e-39,
Organism=Drosophila melanogaster, GI24586301, Length=211, Percent_Identity=41.7061611374408, Blast_Score=172, Evalue=2e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000056
- InterPro:   IPR011060 [H]

Pfam domain/function: PF00834 Ribul_P_3_epim [H]

EC number: =5.1.3.1 [H]

Molecular weight: Translated: 23176; Mature: 23045

Theoretical pI: Translated: 5.49; Mature: 5.49

Prosite motif: PS01085 RIBUL_P_3_EPIMER_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFVAPSLLAADYMNMANSIKEAEHAGADYLHIDVMDGHFVPNLTFGIDMVEQIKKTATI
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCC
PLDVHLMLSNPENYIEKFAAAGAHIISVHIEAAPHIHRVIQQIKAAGCKAGVVLNPGTPA
CEEEEEEECCCHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHCCCCCCEEECCCCCH
SVLDAVLADVDLVLQMTVNPGFGGQAFIDSTIKNMRYLDHWRRENNGSYVIEVDGGVNAE
HHHHHHHHHHHEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHH
TAEKCKQAGVDVLVAGSYFFRADDKIACIKELKA
HHHHHHHCCCCEEEECCEEEECCCCHHHHHHHCC
>Mature Secondary Structure 
TFVAPSLLAADYMNMANSIKEAEHAGADYLHIDVMDGHFVPNLTFGIDMVEQIKKTATI
CCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCC
PLDVHLMLSNPENYIEKFAAAGAHIISVHIEAAPHIHRVIQQIKAAGCKAGVVLNPGTPA
CEEEEEEECCCHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHCCCCCCEEECCCCCH
SVLDAVLADVDLVLQMTVNPGFGGQAFIDSTIKNMRYLDHWRRENNGSYVIEVDGGVNAE
HHHHHHHHHHHEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHH
TAEKCKQAGVDVLVAGSYFFRADDKIACIKELKA
HHHHHHHCCCCEEEECCEEEECCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9534248; 9384377 [H]