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The map label for this gene is yhcK [H]

Identifier: 226224781

GI number: 226224781

Start: 2257562

End: 2258635

Strand: Reverse

Name: yhcK [H]

Synonym: Lm4b_02199

Alternate gene names: 226224781

Gene position: 2258635-2257562 (Counterclockwise)

Preceding gene: 226224782

Following gene: 226224780

Centisome position: 77.54

GC content: 35.47

Gene sequence:

>1074_bases
TTGGTTCAACAGTTGGTAAGTAATGCAGCGATATTACTCGCAGGATTTTATATTATTTCTTTAGTCTATAAAGAACCAAT
TACGAAAGAATTATCGATAAATAGAAAAATGGTGATAGGCGTATGGGCAGGGCTACTAGGATTTGCGCTAATGATTTTTG
GGATACCGATTTCAAATAATGTAATTGTTGATTTGCGTCATATCCCTATTATTATGGTGGGTTTTTATGGCGGGCCCATT
CCGGCAATTGTTTCGGCGGTCATTATTACAGCTTCACGATTTTTAATTTCAGTGAATTCTGCAGCGATGATGGCTGGTGT
AATCATGATGCTGATTGGCATTATAACAGCTCTTTTCAGCAAACGCTTAGAAAAATATAATATTTGGGGCGTTTTTATTT
TGAATATTATTGCGTGTGGTTTTGTAGTCGTTAACTTACATTTGATTTTAGCAAAAGAGCCAGACTTCTGGATAAATATG
TTTATATTTGTATCGATCGCGCTTGTAATTGGCGCTGTTTCCGCAGGTTTAATGAAGAATATGATTAAATCAAAGCAATT
GTTTCAAAAATACGAACAAGACTCTACGCTCGATTATCTGACGCGGTTATCAAATGTAAGGCAATTTGATGAAAAAATCA
ACCATGTAATGGACGATGGAAGTAGGCAAGTGACATTAATGTTAATCGATATTGATTACTTTAAAAATATTAACGATACA
TACGGCCATGACGCTGGTGATGCCATTTTGAAACAATTAGCTATTATTTTAAAACGAAACACATCAGATGGTTCTGAGGC
ATTTAGAAACGGCGGGGAAGAATTTTCCATTGTCTTATTAGATTGTCCGATTGAAAAAGGTAATTTTTTTGCTGAACAAG
TGCGAAAAGAAACGGAAGATCACGATTTTATGATACCGAGTGGAAAACTAGTGAAAATTACAATTTCCGTTGGGGTTAGC
AGTAGTAAAGATGGTGCTAATACAAGTGAAGGATTATTTAAATCTGCTGATGAAGCGCTGTATAAAGCAAAATTAACCGG
GCGAAACCGAGTATGTATTGCAGATGAAAATTAG

Upstream 100 bases:

>100_bases
AACAACTTCGCGTTTAGGGGTTGTTTCTTTGTGTAGAGAGAATGAATAGTTGTGAGCATAATGGGGTATTAAATAACAAA
GTGAAAGGCGGGGATGCTTT

Downstream 100 bases:

>100_bases
CTTGTCGCAAAAAAACGAGTACTTCTAGGAGATAGCTTATGTTATAATATATTGTGTAATGATGAGCAAATAACTAGGAA
ACTAGTCCAAAAGGATGAGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 357; Mature: 357

Protein sequence:

>357_residues
MVQQLVSNAAILLAGFYIISLVYKEPITKELSINRKMVIGVWAGLLGFALMIFGIPISNNVIVDLRHIPIIMVGFYGGPI
PAIVSAVIITASRFLISVNSAAMMAGVIMMLIGIITALFSKRLEKYNIWGVFILNIIACGFVVVNLHLILAKEPDFWINM
FIFVSIALVIGAVSAGLMKNMIKSKQLFQKYEQDSTLDYLTRLSNVRQFDEKINHVMDDGSRQVTLMLIDIDYFKNINDT
YGHDAGDAILKQLAIILKRNTSDGSEAFRNGGEEFSIVLLDCPIEKGNFFAEQVRKETEDHDFMIPSGKLVKITISVGVS
SSKDGANTSEGLFKSADEALYKAKLTGRNRVCIADEN

Sequences:

>Translated_357_residues
MVQQLVSNAAILLAGFYIISLVYKEPITKELSINRKMVIGVWAGLLGFALMIFGIPISNNVIVDLRHIPIIMVGFYGGPI
PAIVSAVIITASRFLISVNSAAMMAGVIMMLIGIITALFSKRLEKYNIWGVFILNIIACGFVVVNLHLILAKEPDFWINM
FIFVSIALVIGAVSAGLMKNMIKSKQLFQKYEQDSTLDYLTRLSNVRQFDEKINHVMDDGSRQVTLMLIDIDYFKNINDT
YGHDAGDAILKQLAIILKRNTSDGSEAFRNGGEEFSIVLLDCPIEKGNFFAEQVRKETEDHDFMIPSGKLVKITISVGVS
SSKDGANTSEGLFKSADEALYKAKLTGRNRVCIADEN
>Mature_357_residues
MVQQLVSNAAILLAGFYIISLVYKEPITKELSINRKMVIGVWAGLLGFALMIFGIPISNNVIVDLRHIPIIMVGFYGGPI
PAIVSAVIITASRFLISVNSAAMMAGVIMMLIGIITALFSKRLEKYNIWGVFILNIIACGFVVVNLHLILAKEPDFWINM
FIFVSIALVIGAVSAGLMKNMIKSKQLFQKYEQDSTLDYLTRLSNVRQFDEKINHVMDDGSRQVTLMLIDIDYFKNINDT
YGHDAGDAILKQLAIILKRNTSDGSEAFRNGGEEFSIVLLDCPIEKGNFFAEQVRKETEDHDFMIPSGKLVKITISVGVS
SSKDGANTSEGLFKSADEALYKAKLTGRNRVCIADEN

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI1786584, Length=208, Percent_Identity=34.1346153846154, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI87081881, Length=185, Percent_Identity=35.6756756756757, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1787262, Length=166, Percent_Identity=34.3373493975904, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1788381, Length=182, Percent_Identity=28.021978021978, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI145693134, Length=172, Percent_Identity=34.8837209302326, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1787802, Length=168, Percent_Identity=32.7380952380952, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI87082007, Length=200, Percent_Identity=31, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1787816, Length=166, Percent_Identity=36.7469879518072, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1787056, Length=180, Percent_Identity=33.3333333333333, Blast_Score=78, Evalue=9e-16,
Organism=Escherichia coli, GI1788956, Length=149, Percent_Identity=32.8859060402685, Blast_Score=69, Evalue=7e-13,
Organism=Escherichia coli, GI87081974, Length=183, Percent_Identity=27.8688524590164, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1788085, Length=177, Percent_Identity=29.9435028248588, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR011620 [H]

Pfam domain/function: PF07694 5TM-5TMR_LYT; PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 39488; Mature: 39488

Theoretical pI: Translated: 7.05; Mature: 7.05

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVQQLVSNAAILLAGFYIISLVYKEPITKELSINRKMVIGVWAGLLGFALMIFGIPISNN
CHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
VIVDLRHIPIIMVGFYGGPIPAIVSAVIITASRFLISVNSAAMMAGVIMMLIGIITALFS
EEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHHEEECHHHHHHHHHHHHHHHHHHHHH
KRLEKYNIWGVFILNIIACGFVVVNLHLILAKEPDFWINMFIFVSIALVIGAVSAGLMKN
HHHHHCCHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH
MIKSKQLFQKYEQDSTLDYLTRLSNVRQFDEKINHVMDDGSRQVTLMLIDIDYFKNINDT
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEHHHCCCCCC
YGHDAGDAILKQLAIILKRNTSDGSEAFRNGGEEFSIVLLDCPIEKGNFFAEQVRKETED
CCCCHHHHHHHHHHHHHHCCCCCHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHCCCC
HDFMIPSGKLVKITISVGVSSSKDGANTSEGLFKSADEALYKAKLTGRNRVCIADEN
CCEECCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCC
>Mature Secondary Structure
MVQQLVSNAAILLAGFYIISLVYKEPITKELSINRKMVIGVWAGLLGFALMIFGIPISNN
CHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
VIVDLRHIPIIMVGFYGGPIPAIVSAVIITASRFLISVNSAAMMAGVIMMLIGIITALFS
EEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHHEEECHHHHHHHHHHHHHHHHHHHHH
KRLEKYNIWGVFILNIIACGFVVVNLHLILAKEPDFWINMFIFVSIALVIGAVSAGLMKN
HHHHHCCHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH
MIKSKQLFQKYEQDSTLDYLTRLSNVRQFDEKINHVMDDGSRQVTLMLIDIDYFKNINDT
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEHHHCCCCCC
YGHDAGDAILKQLAIILKRNTSDGSEAFRNGGEEFSIVLLDCPIEKGNFFAEQVRKETED
CCCCHHHHHHHHHHHHHHCCCCCHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHCCCC
HDFMIPSGKLVKITISVGVSSSKDGANTSEGLFKSADEALYKAKLTGRNRVCIADEN
CCEECCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969498; 9384377 [H]