| Definition | Listeria monocytogenes Clip81459, complete genome. |
|---|---|
| Accession | NC_012488 |
| Length | 2,912,690 |
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The map label for this gene is licR [H]
Identifier: 226224704
GI number: 226224704
Start: 2177207
End: 2179213
Strand: Reverse
Name: licR [H]
Synonym: Lm4b_02120
Alternate gene names: 226224704
Gene position: 2179213-2177207 (Counterclockwise)
Preceding gene: 226224705
Following gene: 226224703
Centisome position: 74.82
GC content: 36.92
Gene sequence:
>2007_bases ATGGAACAGAATTGTAAGGAATTAATTACTTATCTGCTCTTGAATCGGCAAGTGAATCTTAGAAATGTTTCCAAGAATTT TAAAGTATCCAAAGAAGCAATTGGCGCACAGATTACACAAATAAACCATCTACTAAAGTCAGAACCAATTTTAATTGACC ATGACATGATTTTTGTTACAGATGTATGTAGGGAAGCTTGTTACCGGCTTTTAACTGCGGAAGAACAACAGCTGTTTTCG TTTTATGAGGTAAATATTCGTCGCAAACTTATCATGATTAAATTACTACTTCATAATCATTATATGTCACTCGGAGCGCT TGCGGACTACGTTTATGTAAGTAAAAACACCATGCTTACAGATGTTAAAAGTATCAAAGAGAGTCTGCATGAGTTTGAAA TTCAGCTTGATTATTCGAGGAGAGATGGCTACGCTGTTTCTGGTTCAGAATTTCTGATTCGTAATTTACTAGCAGAACTT ATTCGCGAAGTCGTTCAGACCCCATACGGGAAATTTGTCCTTGATGAAAAGAAGCTGATTACTGTGAGCGAAGTGTTTTT ACTAAAAAAACGGCTCGAAAAGGTTGAAAGTAAGCTTCAAATTACCTTTACAGATGAGCAGATGGAAGAATTGCCCTATA TTCTCCACGGCATCATCAAAAGATCCAAAGTAACAAACAAGAAATGGACATTTAAAATTGAAATGTATGACATCAAAAAT ACCCGTGAGTTCCCGATAATGAAAGAAATGTTTTGGGGGTATGATTTTTTAAGTGAAAACGATTTACTTTACTTATCGTT ACAAGTCCTCGCTTCGAACTTAGTCGAGTCGGCGCTTCATTTCTCAGACAGTGAAGAAATCGCCTACGCAGTCGACGAGT TCATTCGTTTACTAGAAATGTATTTTGCGACGGAAATCATGAAGAAAAATGAATTTAAAGAAAAAGTGATTTTACATGTT AGGCCAGCAATTTACCGAACAATTTTAGGATTTCAAATCAATAATCCACTTAAAAAGCAGTTTATTAAAGAGTACACCCC GACATTTAACATTGTAGAAAAAGCCTCCAAACCTTTTGAAAAATTGGTTGGTCACAAGTGGTCAGAAGAGGAGATTGTGT ATCTTTCTATGATAGTTCTTGGGTGGATGTATCAAATTGAAGAAACAGAACAGCCGATTTTCCGCGCAGTTGTCCTTTGT AAAAGTGGTACATCCATCTCTAAACTACTGTTAGAAAACTTGAAAATGATGTTTCCGAATATTGATTTTCAAGGAGCTTA TGCGGTGCGGCAATTAAGTACGGTGGCACGCGATATTGATTTTATTTTTACGACTGTGCCCGTTCAAAGCGATGCCACCA TTTTTGTAATCCCGTCCATTTTAAGTAAAGACAGCCGCCAAATCCTTAGGGAACAAGTGGATAAAGCAATCGAAATGGAC AGTCATAAAAAAACCAAAGAACTGCTTGCTATGCTAAAAGATGAAATTCCCGAAGAAAATATTCGATTAGTGCAAGCCAA AATGGAATCCTTTTTCAACAAAAAAGAGCAACCTATGGAGAAGAAAGAACCAGAACAAATGCAAATTACGGAAGAGCAGG TTCACTTCTTAGAAACGCCACTTGAGTGGGAGCAACTAGTTTCGGTGGCATTTGCACCAATGTTAGAACGAGGAACGGTG GATGCTAGTTACATTCATACTTGTGAAGAAATATTCTATCAAAATTATGAGCAGATGATGATTGGGCCGAATATTTATTT ACCACATGCCAAACCCGCAAACGGGGTAATTGAGCAAGATATTCAGTTGATGATAATGAAAGCGGACACAAAAACCCCTG AAAATGAAGCAGTCAAAATCATGATTGCCTTAGCACCATCTGAACAAAACAAACATATACCATTATTACTAAAATTGAAC GAAATTTTCTTGAAGCCTGAGAAATTAGCGGGAATTCTCGCTTCTACTAACAAAAAGAAAATCGTTGAAATCCTTGAAAG GGGGTGA
Upstream 100 bases:
>100_bases TCATCACAATAAATCTTTCTGCCAAAAGCGAAGTTGTGATGAATCACCATTTTTATGTAAGGGTTATCATTTACTATTAA TATAAGGGAGGGGAAAGTAG
Downstream 100 bases:
>100_bases GCGTCGCGTGGATTACCATGATTTGTTTCAAAAAGAGTTAACCCTGATAAATTCAAGATACGAGAATCAGGCAGAACTTT TTGAATACACGAGCAAGATA
Product: transcription antiterminator
Products: NA
Alternate protein names: Putative phosphotransferase enzyme IIB component; Putative PTS system EIIB component; Putative phosphotransferase enzyme IIA component; Putative PTS system EIIA component [H]
Number of amino acids: Translated: 668; Mature: 668
Protein sequence:
>668_residues MEQNCKELITYLLLNRQVNLRNVSKNFKVSKEAIGAQITQINHLLKSEPILIDHDMIFVTDVCREACYRLLTAEEQQLFS FYEVNIRRKLIMIKLLLHNHYMSLGALADYVYVSKNTMLTDVKSIKESLHEFEIQLDYSRRDGYAVSGSEFLIRNLLAEL IREVVQTPYGKFVLDEKKLITVSEVFLLKKRLEKVESKLQITFTDEQMEELPYILHGIIKRSKVTNKKWTFKIEMYDIKN TREFPIMKEMFWGYDFLSENDLLYLSLQVLASNLVESALHFSDSEEIAYAVDEFIRLLEMYFATEIMKKNEFKEKVILHV RPAIYRTILGFQINNPLKKQFIKEYTPTFNIVEKASKPFEKLVGHKWSEEEIVYLSMIVLGWMYQIEETEQPIFRAVVLC KSGTSISKLLLENLKMMFPNIDFQGAYAVRQLSTVARDIDFIFTTVPVQSDATIFVIPSILSKDSRQILREQVDKAIEMD SHKKTKELLAMLKDEIPEENIRLVQAKMESFFNKKEQPMEKKEPEQMQITEEQVHFLETPLEWEQLVSVAFAPMLERGTV DASYIHTCEEIFYQNYEQMMIGPNIYLPHAKPANGVIEQDIQLMIMKADTKTPENEAVKIMIALAPSEQNKHIPLLLKLN EIFLKPEKLAGILASTNKKKIVEILERG
Sequences:
>Translated_668_residues MEQNCKELITYLLLNRQVNLRNVSKNFKVSKEAIGAQITQINHLLKSEPILIDHDMIFVTDVCREACYRLLTAEEQQLFS FYEVNIRRKLIMIKLLLHNHYMSLGALADYVYVSKNTMLTDVKSIKESLHEFEIQLDYSRRDGYAVSGSEFLIRNLLAEL IREVVQTPYGKFVLDEKKLITVSEVFLLKKRLEKVESKLQITFTDEQMEELPYILHGIIKRSKVTNKKWTFKIEMYDIKN TREFPIMKEMFWGYDFLSENDLLYLSLQVLASNLVESALHFSDSEEIAYAVDEFIRLLEMYFATEIMKKNEFKEKVILHV RPAIYRTILGFQINNPLKKQFIKEYTPTFNIVEKASKPFEKLVGHKWSEEEIVYLSMIVLGWMYQIEETEQPIFRAVVLC KSGTSISKLLLENLKMMFPNIDFQGAYAVRQLSTVARDIDFIFTTVPVQSDATIFVIPSILSKDSRQILREQVDKAIEMD SHKKTKELLAMLKDEIPEENIRLVQAKMESFFNKKEQPMEKKEPEQMQITEEQVHFLETPLEWEQLVSVAFAPMLERGTV DASYIHTCEEIFYQNYEQMMIGPNIYLPHAKPANGVIEQDIQLMIMKADTKTPENEAVKIMIALAPSEQNKHIPLLLKLN EIFLKPEKLAGILASTNKKKIVEILERG >Mature_668_residues MEQNCKELITYLLLNRQVNLRNVSKNFKVSKEAIGAQITQINHLLKSEPILIDHDMIFVTDVCREACYRLLTAEEQQLFS FYEVNIRRKLIMIKLLLHNHYMSLGALADYVYVSKNTMLTDVKSIKESLHEFEIQLDYSRRDGYAVSGSEFLIRNLLAEL IREVVQTPYGKFVLDEKKLITVSEVFLLKKRLEKVESKLQITFTDEQMEELPYILHGIIKRSKVTNKKWTFKIEMYDIKN TREFPIMKEMFWGYDFLSENDLLYLSLQVLASNLVESALHFSDSEEIAYAVDEFIRLLEMYFATEIMKKNEFKEKVILHV RPAIYRTILGFQINNPLKKQFIKEYTPTFNIVEKASKPFEKLVGHKWSEEEIVYLSMIVLGWMYQIEETEQPIFRAVVLC KSGTSISKLLLENLKMMFPNIDFQGAYAVRQLSTVARDIDFIFTTVPVQSDATIFVIPSILSKDSRQILREQVDKAIEMD SHKKTKELLAMLKDEIPEENIRLVQAKMESFFNKKEQPMEKKEPEQMQITEEQVHFLETPLEWEQLVSVAFAPMLERGTV DASYIHTCEEIFYQNYEQMMIGPNIYLPHAKPANGVIEQDIQLMIMKADTKTPENEAVKIMIALAPSEQNKHIPLLLKLN EIFLKPEKLAGILASTNKKKIVEILERG
Specific function: Positive regulator of the licABCH operon [H]
COG id: COG3711
COG function: function code K; Transcriptional antiterminator
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PTS EIIB type-2 domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013196 - InterPro: IPR007737 - InterPro: IPR011608 - InterPro: IPR016152 - InterPro: IPR002178 - InterPro: IPR013011 - InterPro: IPR003501 - InterPro: IPR011991 [H]
Pfam domain/function: PF08279 HTH_11; PF05043 Mga; PF00874 PRD; PF00359 PTS_EIIA_2; PF02302 PTS_IIB [H]
EC number: =2.7.1.69 [H]
Molecular weight: Translated: 77961; Mature: 77961
Theoretical pI: Translated: 5.96; Mature: 5.96
Prosite motif: PS51094 PTS_EIIA_TYPE_2 ; PS51099 PTS_EIIB_TYPE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEQNCKELITYLLLNRQVNLRNVSKNFKVSKEAIGAQITQINHLLKSEPILIDHDMIFVT CCCCHHHHHHHHHHCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHH DVCREACYRLLTAEEQQLFSFYEVNIRRKLIMIKLLLHNHYMSLGALADYVYVSKNTMLT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHH DVKSIKESLHEFEIQLDYSRRDGYAVSGSEFLIRNLLAELIREVVQTPYGKFVLDEKKLI HHHHHHHHHHHEEEEEEECCCCCEEECCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCH TVSEVFLLKKRLEKVESKLQITFTDEQMEELPYILHGIIKRSKVTNKKWTFKIEMYDIKN HHHHHHHHHHHHHHHHHHEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCC TREFPIMKEMFWGYDFLSENDLLYLSLQVLASNLVESALHFSDSEEIAYAVDEFIRLLEM CCCCCHHHHHHCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH YFATEIMKKNEFKEKVILHVRPAIYRTILGFQINNPLKKQFIKEYTPTFNIVEKASKPFE HHHHHHHHHHHHHHHHHHEECHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHCCCHH KLVGHKWSEEEIVYLSMIVLGWMYQIEETEQPIFRAVVLCKSGTSISKLLLENLKMMFPN HHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCC IDFQGAYAVRQLSTVARDIDFIFTTVPVQSDATIFVIPSILSKDSRQILREQVDKAIEMD CCCCHHHHHHHHHHHHHHHHHHEEEECCCCCCEEEEECHHHCCHHHHHHHHHHHHHHCCC SHKKTKELLAMLKDEIPEENIRLVQAKMESFFNKKEQPMEKKEPEQMQITEEQVHFLETP CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCC LEWEQLVSVAFAPMLERGTVDASYIHTCEEIFYQNYEQMMIGPNIYLPHAKPANGVIEQD CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHEEECCCEECCCCCCCCCHHHCC IQLMIMKADTKTPENEAVKIMIALAPSEQNKHIPLLLKLNEIFLKPEKLAGILASTNKKK CEEEEEECCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEHHHHCCHHHHHHHHHCCCHHH IVEILERG HHHHHHCC >Mature Secondary Structure MEQNCKELITYLLLNRQVNLRNVSKNFKVSKEAIGAQITQINHLLKSEPILIDHDMIFVT CCCCHHHHHHHHHHCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHH DVCREACYRLLTAEEQQLFSFYEVNIRRKLIMIKLLLHNHYMSLGALADYVYVSKNTMLT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHH DVKSIKESLHEFEIQLDYSRRDGYAVSGSEFLIRNLLAELIREVVQTPYGKFVLDEKKLI HHHHHHHHHHHEEEEEEECCCCCEEECCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCH TVSEVFLLKKRLEKVESKLQITFTDEQMEELPYILHGIIKRSKVTNKKWTFKIEMYDIKN HHHHHHHHHHHHHHHHHHEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCC TREFPIMKEMFWGYDFLSENDLLYLSLQVLASNLVESALHFSDSEEIAYAVDEFIRLLEM CCCCCHHHHHHCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH YFATEIMKKNEFKEKVILHVRPAIYRTILGFQINNPLKKQFIKEYTPTFNIVEKASKPFE HHHHHHHHHHHHHHHHHHEECHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHCCCHH KLVGHKWSEEEIVYLSMIVLGWMYQIEETEQPIFRAVVLCKSGTSISKLLLENLKMMFPN HHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCC IDFQGAYAVRQLSTVARDIDFIFTTVPVQSDATIFVIPSILSKDSRQILREQVDKAIEMD CCCCHHHHHHHHHHHHHHHHHHEEEECCCCCCEEEEECHHHCCHHHHHHHHHHHHHHCCC SHKKTKELLAMLKDEIPEENIRLVQAKMESFFNKKEQPMEKKEPEQMQITEEQVHFLETP CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCC LEWEQLVSVAFAPMLERGTVDASYIHTCEEIFYQNYEQMMIGPNIYLPHAKPANGVIEQD CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHEEECCCEECCCCCCCCCHHHCC IQLMIMKADTKTPENEAVKIMIALAPSEQNKHIPLLLKLNEIFLKPEKLAGILASTNKKK CEEEEEECCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEHHHHCCHHHHHHHHHCCCHHH IVEILERG HHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8990303; 8969509; 9384377; 10438772 [H]