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The map label for this gene is ylmH [H]

Identifier: 226224634

GI number: 226224634

Start: 2109643

End: 2110419

Strand: Reverse

Name: ylmH [H]

Synonym: Lm4b_02049

Alternate gene names: 226224634

Gene position: 2110419-2109643 (Counterclockwise)

Preceding gene: 226224635

Following gene: 226224633

Centisome position: 72.46

GC content: 39.25

Gene sequence:

>777_bases
ATGGATGGAATTTATCAGCATTTTCGCGCGGAAGAATACGCATTTATTGATAAGATTTTAGGGATTACGATGCAAGTTGA
GAATGAATACACGCCACAACTTACGGATTTCTTGGATCCGAGGCAGCGTTTTATTACCGAAACAGTTATCGGTGGTTATG
ATGAGATCAATGTACAGTTTTTTGGTGGAGTGGCGCACGCGGAACGACGGCGCGCACTGATTTATCCAGATTATTATACG
CCGACAGAAGCGGATTTTGAGATTGCTTTGTTCCATATACGCTACCCGGTAAAATTCACGACCCTCACACATCAAAAAAT
CCTTGGAACACTGATGTCGCTTGGAATGAAGCGTGATATTTTTGGAGATATTTTAAATAATGGTAGTGAATGGCAGTTAT
TAGTAGAAAGTACGATGAAGGATTATTTAACATTACAGCTTGAAAAAATCGGTAAAGTGAATGTGATGTTAGAGGAAACG
GATTTAGCTAATGCTGTTTATGCCCCGGTCGTTTGGGAAGAAATGGGCTTAACTGTTTCTAGTATGCGACTTGACGTGAT
TATTAGTAATGTACATCATATTTCTAGACAGAAGGCGAAACAATTGGTTACTGCGGGACTAGTAAAAGTCAACTGGAAAA
CAGTGGAAAACCCGGATTTTGAATGTGAAGAAGAAGATGTATTGTCTGCTCGCGGATATGGTCGGGTAAAAGTACTATCA
ACTGGCGGCAGAACGAAAAAAGATAAAATTAGGATTGAAATTGGCTATTTAAAATAA

Upstream 100 bases:

>100_bases
GTGGCTTTTTTTATTAATAAGCAAGATTAGCCTAGTAGCAGCTGTTTTCATGGTATAATAGGGCTAAAGACTCGGAACGG
ATTGAAAGGGAGAAATTAGG

Downstream 100 bases:

>100_bases
AAACGAAAGCAGTTGCTGCTTTCGTTTCAGATATAGTAATGAGTAGTACCTAATGTCATATGTTGTCAAATGGTCTTATG
TTATTATTAAATATGAAAAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 258

Protein sequence:

>258_residues
MDGIYQHFRAEEYAFIDKILGITMQVENEYTPQLTDFLDPRQRFITETVIGGYDEINVQFFGGVAHAERRRALIYPDYYT
PTEADFEIALFHIRYPVKFTTLTHQKILGTLMSLGMKRDIFGDILNNGSEWQLLVESTMKDYLTLQLEKIGKVNVMLEET
DLANAVYAPVVWEEMGLTVSSMRLDVIISNVHHISRQKAKQLVTAGLVKVNWKTVENPDFECEEEDVLSARGYGRVKVLS
TGGRTKKDKIRIEIGYLK

Sequences:

>Translated_258_residues
MDGIYQHFRAEEYAFIDKILGITMQVENEYTPQLTDFLDPRQRFITETVIGGYDEINVQFFGGVAHAERRRALIYPDYYT
PTEADFEIALFHIRYPVKFTTLTHQKILGTLMSLGMKRDIFGDILNNGSEWQLLVESTMKDYLTLQLEKIGKVNVMLEET
DLANAVYAPVVWEEMGLTVSSMRLDVIISNVHHISRQKAKQLVTAGLVKVNWKTVENPDFECEEEDVLSARGYGRVKVLS
TGGRTKKDKIRIEIGYLK
>Mature_258_residues
MDGIYQHFRAEEYAFIDKILGITMQVENEYTPQLTDFLDPRQRFITETVIGGYDEINVQFFGGVAHAERRRALIYPDYYT
PTEADFEIALFHIRYPVKFTTLTHQKILGTLMSLGMKRDIFGDILNNGSEWQLLVESTMKDYLTLQLEKIGKVNVMLEET
DLANAVYAPVVWEEMGLTVSSMRLDVIISNVHHISRQKAKQLVTAGLVKVNWKTVENPDFECEEEDVLSARGYGRVKVLS
TGGRTKKDKIRIEIGYLK

Specific function: Unknown

COG id: COG2302

COG function: function code S; Uncharacterized conserved protein, contains S4-like domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002942 [H]

Pfam domain/function: PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 29638; Mature: 29638

Theoretical pI: Translated: 5.42; Mature: 5.42

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDGIYQHFRAEEYAFIDKILGITMQVENEYTPQLTDFLDPRQRFITETVIGGYDEINVQF
CCCHHHHHHHHHHHHHHHHHCEEEEECCCCCCHHHHHHCHHHHHHHHHHHCCCCEEEEEE
FGGVAHAERRRALIYPDYYTPTEADFEIALFHIRYPVKFTTLTHQKILGTLMSLGMKRDI
ECCHHHHHCCCEEECCCCCCCCCCCEEEEEEEEECCEEEEEHHHHHHHHHHHHCCCCHHH
FGDILNNGSEWQLLVESTMKDYLTLQLEKIGKVNVMLEETDLANAVYAPVVWEEMGLTVS
HHHHHCCCCCEEEEHHHHHHHHHEEEEECCCCEEEEEECCCCCCHHHHCCHHHHHCCCHH
SMRLDVIISNVHHISRQKAKQLVTAGLVKVNWKTVENPDFECEEEDVLSARGYGRVKVLS
HEEEEHHHHHHHHHHHHHHHHHHHHCEEEEEEEECCCCCCCCCHHHHHHCCCCCEEEEEE
TGGRTKKDKIRIEIGYLK
CCCCCCCCEEEEEEEECC
>Mature Secondary Structure
MDGIYQHFRAEEYAFIDKILGITMQVENEYTPQLTDFLDPRQRFITETVIGGYDEINVQF
CCCHHHHHHHHHHHHHHHHHCEEEEECCCCCCHHHHHHCHHHHHHHHHHHCCCCEEEEEE
FGGVAHAERRRALIYPDYYTPTEADFEIALFHIRYPVKFTTLTHQKILGTLMSLGMKRDI
ECCHHHHHCCCEEECCCCCCCCCCCEEEEEEEEECCEEEEEHHHHHHHHHHHHCCCCHHH
FGDILNNGSEWQLLVESTMKDYLTLQLEKIGKVNVMLEETDLANAVYAPVVWEEMGLTVS
HHHHHCCCCCEEEEHHHHHHHHHEEEEECCCCEEEEEECCCCCCHHHHCCHHHHHCCCHH
SMRLDVIISNVHHISRQKAKQLVTAGLVKVNWKTVENPDFECEEEDVLSARGYGRVKVLS
HEEEEHHHHHHHHHHHHHHHHHHHHCEEEEEEEECCCCCCCCCHHHHHHCCCCCEEEEEE
TGGRTKKDKIRIEIGYLK
CCCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9045828; 9384377 [H]