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The map label for this gene is ytcP [H]

Identifier: 226224606

GI number: 226224606

Start: 2070242

End: 2071213

Strand: Reverse

Name: ytcP [H]

Synonym: Lm4b_02020

Alternate gene names: 226224606

Gene position: 2071213-2070242 (Counterclockwise)

Preceding gene: 226224607

Following gene: 226224605

Centisome position: 71.11

GC content: 38.68

Gene sequence:

>972_bases
TTGGCAGAACAGCTTGAAGCAGTGAGTGAAATAGAACAAGTCCGAGGCGAAATGGAAAAACCAGCAAAAAATAAACCAGC
TAAAGACATTATTGGTTTTGGGAAAAAGATGAACGTAGCGATGAATATTATGCTCGCTTTCCTAGCGCTCATTTGTATTT
TTCCATTTTTGTACATTATTGTTATTTCTTTTTCTAGTGAATCATCTCTGGCAGCAAATGGCTTTCAACTAATACCCAAA
GAGTGGAGCATGGAAGCGTATGAGTACTTATGGAAGATGAAAGGACAACTATTACAATCATACGGTATTACCATTTTAGT
TACAGTAATTGGTACGGTATGTAGTGTTGCAATGATTGCTCTTTACTCTTACGCGATATCAAGACCACAATTTAAGTATC
GTCGTCAATTTACATTTATTGCCTTTTTTACCATGTTATTTAGTGGCGGGATGGTGCCTGCCTATATCGTGATGACGCAA
TTTTTGCACTTACGAAATAGCATTTGGGCGATGATTTTACCACTAGCAATGAATGCTTTTTACATTATGATTATGCGCAC
GTTCTTTTTACGGTCTATTCCAGAACCAATACTTGAGGCGGCTCGAATTGAAGGCGCTGGGGAACTACGGATCTTTTTAC
AAATGGTTGTTCCACTTTCTTTACCAGGGCTTGCGACAATCGCGCTTTTCTCTACACTAGGATACTGGAATGACTGGTTC
CAAGCGTCACTTTATATTGATAATCCGAATTTAGTGCCGCTACAATCGCTACTTATGAAAATTGAAAACAACTTAGAATT
CATGCGACAAAACTCTGAAATTGCTTATACTGCCGGCGCGTTTAAGTCCATACCACAAGACGGTGCAAAAATGGCGATGG
TTGTTATTTCGACATTACCAATCGCAATCACCTATCCGTTTTTCCAAAAATACTTTATTAGTGGACTCACAATTGGCGGC
GTAAAAGAATAA

Upstream 100 bases:

>100_bases
TCAGTCCATCGTCGGCTTTATTCTAGTGCTACTCACAAACTACATCGTGAAAAAAATAAATCCAGAATATGGCTTATTTT
AGAAAAGGAGGCGAGGTGCT

Downstream 100 bases:

>100_bases
AAAAGATGGAGGGAATTTAATGAAGAAGAAATGGGGAGTAATCATCGCATCACTCTGCTTGCTACTAGGTTTAAGCGCGT
GCGGAAGCGATGAGAAGGCA

Product: ABC transporter, permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 322

Protein sequence:

>323_residues
MAEQLEAVSEIEQVRGEMEKPAKNKPAKDIIGFGKKMNVAMNIMLAFLALICIFPFLYIIVISFSSESSLAANGFQLIPK
EWSMEAYEYLWKMKGQLLQSYGITILVTVIGTVCSVAMIALYSYAISRPQFKYRRQFTFIAFFTMLFSGGMVPAYIVMTQ
FLHLRNSIWAMILPLAMNAFYIMIMRTFFLRSIPEPILEAARIEGAGELRIFLQMVVPLSLPGLATIALFSTLGYWNDWF
QASLYIDNPNLVPLQSLLMKIENNLEFMRQNSEIAYTAGAFKSIPQDGAKMAMVVISTLPIAITYPFFQKYFISGLTIGG
VKE

Sequences:

>Translated_323_residues
MAEQLEAVSEIEQVRGEMEKPAKNKPAKDIIGFGKKMNVAMNIMLAFLALICIFPFLYIIVISFSSESSLAANGFQLIPK
EWSMEAYEYLWKMKGQLLQSYGITILVTVIGTVCSVAMIALYSYAISRPQFKYRRQFTFIAFFTMLFSGGMVPAYIVMTQ
FLHLRNSIWAMILPLAMNAFYIMIMRTFFLRSIPEPILEAARIEGAGELRIFLQMVVPLSLPGLATIALFSTLGYWNDWF
QASLYIDNPNLVPLQSLLMKIENNLEFMRQNSEIAYTAGAFKSIPQDGAKMAMVVISTLPIAITYPFFQKYFISGLTIGG
VKE
>Mature_322_residues
AEQLEAVSEIEQVRGEMEKPAKNKPAKDIIGFGKKMNVAMNIMLAFLALICIFPFLYIIVISFSSESSLAANGFQLIPKE
WSMEAYEYLWKMKGQLLQSYGITILVTVIGTVCSVAMIALYSYAISRPQFKYRRQFTFIAFFTMLFSGGMVPAYIVMTQF
LHLRNSIWAMILPLAMNAFYIMIMRTFFLRSIPEPILEAARIEGAGELRIFLQMVVPLSLPGLATIALFSTLGYWNDWFQ
ASLYIDNPNLVPLQSLLMKIENNLEFMRQNSEIAYTAGAFKSIPQDGAKMAMVVISTLPIAITYPFFQKYFISGLTIGGV
KE

Specific function: Probably part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=308, Percent_Identity=25.974025974026, Blast_Score=82, Evalue=6e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 36503; Mature: 36372

Theoretical pI: Translated: 8.87; Mature: 8.87

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
6.2 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
5.9 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEQLEAVSEIEQVRGEMEKPAKNKPAKDIIGFGKKMNVAMNIMLAFLALICIFPFLYII
CCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
VISFSSESSLAANGFQLIPKEWSMEAYEYLWKMKGQLLQSYGITILVTVIGTVCSVAMIA
HHHCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
LYSYAISRPQFKYRRQFTFIAFFTMLFSGGMVPAYIVMTQFLHLRNSIWAMILPLAMNAF
HHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YIMIMRTFFLRSIPEPILEAARIEGAGELRIFLQMVVPLSLPGLATIALFSTLGYWNDWF
HHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
QASLYIDNPNLVPLQSLLMKIENNLEFMRQNSEIAYTAGAFKSIPQDGAKMAMVVISTLP
EEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHCCCCCHHHHHHHHHHHHH
IAITYPFFQKYFISGLTIGGVKE
HHEEHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
AEQLEAVSEIEQVRGEMEKPAKNKPAKDIIGFGKKMNVAMNIMLAFLALICIFPFLYII
CHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
VISFSSESSLAANGFQLIPKEWSMEAYEYLWKMKGQLLQSYGITILVTVIGTVCSVAMIA
HHHCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
LYSYAISRPQFKYRRQFTFIAFFTMLFSGGMVPAYIVMTQFLHLRNSIWAMILPLAMNAF
HHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YIMIMRTFFLRSIPEPILEAARIEGAGELRIFLQMVVPLSLPGLATIALFSTLGYWNDWF
HHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
QASLYIDNPNLVPLQSLLMKIENNLEFMRQNSEIAYTAGAFKSIPQDGAKMAMVVISTLP
EEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHCCCCCHHHHHHHHHHHHH
IAITYPFFQKYFISGLTIGGVKE
HHEEHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377; 8763940 [H]