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The map label for this gene is deoR [H]

Identifier: 226224594

GI number: 226224594

Start: 2058451

End: 2059398

Strand: Reverse

Name: deoR [H]

Synonym: Lm4b_02008

Alternate gene names: 226224594

Gene position: 2059398-2058451 (Counterclockwise)

Preceding gene: 226224595

Following gene: 226224593

Centisome position: 70.7

GC content: 42.09

Gene sequence:

>948_bases
ATGGATAAACAGAAAGAACAGCTCAGCGTAGAGGTTGCGAGACTTTATTATCAGGCGGATCTAGGTCAGCAAGAAATCGC
CACACGCCTAGGTGTATCCAGACCGACCGTTTCCAGATTACTCCAAAACGCGAAAACAAAAGGATACGTCAAAATCGAAG
TCCAAGATCCATTTTCTAACCTAACAGAACTGGCCGTGGCTTTAAAAGAAAAATACCAACTTAAAAATGTCACCGTTGCA
TTCAGTCAAACAAATGATTATAGCGAAATCACCAAGCAAATCAGCCAAAGTGCCGCTGAATACTTAGAAGAAATTATCCA
TGATGGCGATATTCTTGGCGTAAGTTGGGGAACAACGATGTACAAAATTGCCCAAAAACTAGCCCCGCTAAAAGCAGAAA
TAAAAGTCGTCCAACTTAAAGGTGGTGTGAGTCATTCTGATGTCAATACGTATGCGGCCGAAACATTAGCGTTATTCGGT
GCAGCTTATGACACCGCGCCAGTATCACTTCCACTTCCTGTAGTCCTTGATAATCCACTCGCTAAACAAATGGTAGAAGC
AGACCGCCATATAAAAAATATCATCGAACTCGGTAAAAAAGCCAATATCGCTATTTTTACAGTAGGAACCGTGCGTGATG
AGGCCCTGCTTTTCCGCCTAGGCTATTTTTCCGATCAAGAAAAGGCTCGCTTAAAAGAAAAAGCAGTCGGCGATATTTGT
TCGCGATTTTTCACAATTGGCGGCGAAATCGCTGACGAGAAAATGGACGAACGAACCATTGGTATCGACTTGCAAGATTT
AAAGCAAAAAGAAACAGCCATTCTTGTCGCAGGTGGTGAACGAAAAATAAAAGCGATTCATGGCGCACTTCGAGGCGGTT
ATGCCAATCATTTTATTACCGACCAATTTACCGCAAAACAACTACTTGAACAAAATTTCATCAATTAG

Upstream 100 bases:

>100_bases
TAATAGGAAAAAGACAGCCGCGGCTGTCTTTTTTTTATCTTCTCTCTCGAACTATCCCCGCTGTTACGTTATACTAAAAA
GAAAACGATGGAGGGATGAA

Downstream 100 bases:

>100_bases
TTTACAAATGTTCTGTAGTGCGATATGATGAAACCAAATCCAATTTTAAAGGAGTTTTTAAAATGACAATTGCCAAAATG
ATCGATCACACTGCTTTAAA

Product: transcription repressor of dra/nupC/pdp operon DeoR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MDKQKEQLSVEVARLYYQADLGQQEIATRLGVSRPTVSRLLQNAKTKGYVKIEVQDPFSNLTELAVALKEKYQLKNVTVA
FSQTNDYSEITKQISQSAAEYLEEIIHDGDILGVSWGTTMYKIAQKLAPLKAEIKVVQLKGGVSHSDVNTYAAETLALFG
AAYDTAPVSLPLPVVLDNPLAKQMVEADRHIKNIIELGKKANIAIFTVGTVRDEALLFRLGYFSDQEKARLKEKAVGDIC
SRFFTIGGEIADEKMDERTIGIDLQDLKQKETAILVAGGERKIKAIHGALRGGYANHFITDQFTAKQLLEQNFIN

Sequences:

>Translated_315_residues
MDKQKEQLSVEVARLYYQADLGQQEIATRLGVSRPTVSRLLQNAKTKGYVKIEVQDPFSNLTELAVALKEKYQLKNVTVA
FSQTNDYSEITKQISQSAAEYLEEIIHDGDILGVSWGTTMYKIAQKLAPLKAEIKVVQLKGGVSHSDVNTYAAETLALFG
AAYDTAPVSLPLPVVLDNPLAKQMVEADRHIKNIIELGKKANIAIFTVGTVRDEALLFRLGYFSDQEKARLKEKAVGDIC
SRFFTIGGEIADEKMDERTIGIDLQDLKQKETAILVAGGERKIKAIHGALRGGYANHFITDQFTAKQLLEQNFIN
>Mature_315_residues
MDKQKEQLSVEVARLYYQADLGQQEIATRLGVSRPTVSRLLQNAKTKGYVKIEVQDPFSNLTELAVALKEKYQLKNVTVA
FSQTNDYSEITKQISQSAAEYLEEIIHDGDILGVSWGTTMYKIAQKLAPLKAEIKVVQLKGGVSHSDVNTYAAETLALFG
AAYDTAPVSLPLPVVLDNPLAKQMVEADRHIKNIIELGKKANIAIFTVGTVRDEALLFRLGYFSDQEKARLKEKAVGDIC
SRFFTIGGEIADEKMDERTIGIDLQDLKQKETAILVAGGERKIKAIHGALRGGYANHFITDQFTAKQLLEQNFIN

Specific function: Negative regulator of the dra-nupC-pdp operon. DeoR binds cooperatively to the operator DNA, which consists of a palindrome and a direct repeat sequence located 3' to the palindrome [H]

COG id: COG2390

COG function: function code K; Transcriptional regulator, contains sigma factor-related N-terminal domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sorC transcriptional regulatory family [H]

Homologues:

Organism=Escherichia coli, GI87082414, Length=303, Percent_Identity=31.023102310231, Blast_Score=147, Evalue=1e-36,
Organism=Escherichia coli, GI1787791, Length=316, Percent_Identity=28.7974683544304, Blast_Score=125, Evalue=3e-30,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR007630
- InterPro:   IPR007324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04545 Sigma70_r4; PF04198 Sugar-bind [H]

EC number: NA

Molecular weight: Translated: 34936; Mature: 34936

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKQKEQLSVEVARLYYQADLGQQEIATRLGVSRPTVSRLLQNAKTKGYVKIEVQDPFSN
CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHCCCCCCEEEEEEECCHHH
LTELAVALKEKYQLKNVTVAFSQTNDYSEITKQISQSAAEYLEEIIHDGDILGVSWGTTM
HHHHHHHHHHHHHHCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHH
YKIAQKLAPLKAEIKVVQLKGGVSHSDVNTYAAETLALFGAAYDTAPVSLPLPVVLDNPL
HHHHHHHCCCHHCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCHH
AKQMVEADRHIKNIIELGKKANIAIFTVGTVRDEALLFRLGYFSDQEKARLKEKAVGDIC
HHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHH
SRFFTIGGEIADEKMDERTIGIDLQDLKQKETAILVAGGERKIKAIHGALRGGYANHFIT
HHHHHCCCHHHHHHHCCCEECCCHHHHCCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEC
DQFTAKQLLEQNFIN
CHHHHHHHHHHHCCC
>Mature Secondary Structure
MDKQKEQLSVEVARLYYQADLGQQEIATRLGVSRPTVSRLLQNAKTKGYVKIEVQDPFSN
CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHCCCCCCEEEEEEECCHHH
LTELAVALKEKYQLKNVTVAFSQTNDYSEITKQISQSAAEYLEEIIHDGDILGVSWGTTM
HHHHHHHHHHHHHHCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHH
YKIAQKLAPLKAEIKVVQLKGGVSHSDVNTYAAETLALFGAAYDTAPVSLPLPVVLDNPL
HHHHHHHCCCHHCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCHH
AKQMVEADRHIKNIIELGKKANIAIFTVGTVRDEALLFRLGYFSDQEKARLKEKAVGDIC
HHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHH
SRFFTIGGEIADEKMDERTIGIDLQDLKQKETAILVAGGERKIKAIHGALRGGYANHFIT
HHHHHCCCHHHHHHHCCCEECCCHHHHCCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEC
DQFTAKQLLEQNFIN
CHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8550462; 8867804; 9384377; 10074062; 10714997 [H]