Click here to switch to the map view.

The map label for this gene is yodJ [H]

Identifier: 226224458

GI number: 226224458

Start: 1917699

End: 1918523

Strand: Reverse

Name: yodJ [H]

Synonym: Lm4b_01871

Alternate gene names: 226224458

Gene position: 1918523-1917699 (Counterclockwise)

Preceding gene: 226224459

Following gene: 226224457

Centisome position: 65.87

GC content: 37.94

Gene sequence:

>825_bases
ATGAGTTCTTTATTAACAATTGCTTTAGCTGTTAGCATCAGTTGTGTCCACACAGTGGAAGATCAATATTTTGGTGGCAC
AAATGCTGATTCCATCGCTAAAGTGGAGCAAAAATCGTCAGGCAATCAAACACTTGCGGAATTAGAAAAAGATCCACTTT
ATCCATACATTGATAAACAAAATAAATTAACAGAAAAAGATGGTATAAAGTATATTGAAAATGAGGAAAATATGTTGGTT
TTAGCTAACAAAGATTATTCATTGCAACCAACATATACCCCCCCTGACTTGGTTCGTCCAAATGTTACATTCTCTTTTGG
CAGCCAACAAGTCGAAAAAGCACAGCTAAGAAAAGAAGCAGCAACTGCATTAGAAGAAATGTTCGTAGCTGCGAACAAAG
ATGGTAAGAAACTATTCGCCGTATCTGGTTATCGATCGTACAAACGCCAGCAAGAAGTCTTCCAAGCAGAAGTAAATGCG
AAAGGTGACCAAAAAGCGAGAGAAGCAGTAGCGTATCCAGGTACTAGCGAACATCAAACTGGTTTAGCGATGGATATCTC
ATCAGAAAACCAATCATATGAACTCACAGAAGCATTCGGAACAACTCCTGAAGGCAAATGGTTGCAAGAAAATGCCCACA
ATTATGGTTTTATCTTGCGTTATATGAAAGGGCGAGAAGCTATCACGAAGTATCAATATGAATCTTGGCATTATCGTTAT
GTTGGTAAGGATGCGGCAACGATTATTTACGAAAACAACTGGACTTTAGAAGAATTTTTTGAACATGTTAAGGCACTTCA
AAAGAAAGTAGATGCCGCGAAATAA

Upstream 100 bases:

>100_bases
CAATGATATGATTGTTGTAGCACTTGAAGCAGCAATAAAATAATTTTAATTACTAACTTAGAATTAGACTTAATGTATAC
AGGAAGGTTGATAAACAGAT

Downstream 100 bases:

>100_bases
CAAGATTTTGAGCCATAAACAAGCATTTGTTTATGGCTTTTTTTTGTTCTCAGAAATTAAATGGTTGCATAAAATACCTA
TAGGGGGTATACTGTTAATT

Product: D-alanyl-D-alanine carboxypeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 274; Mature: 273

Protein sequence:

>274_residues
MSSLLTIALAVSISCVHTVEDQYFGGTNADSIAKVEQKSSGNQTLAELEKDPLYPYIDKQNKLTEKDGIKYIENEENMLV
LANKDYSLQPTYTPPDLVRPNVTFSFGSQQVEKAQLRKEAATALEEMFVAANKDGKKLFAVSGYRSYKRQQEVFQAEVNA
KGDQKAREAVAYPGTSEHQTGLAMDISSENQSYELTEAFGTTPEGKWLQENAHNYGFILRYMKGREAITKYQYESWHYRY
VGKDAATIIYENNWTLEEFFEHVKALQKKVDAAK

Sequences:

>Translated_274_residues
MSSLLTIALAVSISCVHTVEDQYFGGTNADSIAKVEQKSSGNQTLAELEKDPLYPYIDKQNKLTEKDGIKYIENEENMLV
LANKDYSLQPTYTPPDLVRPNVTFSFGSQQVEKAQLRKEAATALEEMFVAANKDGKKLFAVSGYRSYKRQQEVFQAEVNA
KGDQKAREAVAYPGTSEHQTGLAMDISSENQSYELTEAFGTTPEGKWLQENAHNYGFILRYMKGREAITKYQYESWHYRY
VGKDAATIIYENNWTLEEFFEHVKALQKKVDAAK
>Mature_273_residues
SSLLTIALAVSISCVHTVEDQYFGGTNADSIAKVEQKSSGNQTLAELEKDPLYPYIDKQNKLTEKDGIKYIENEENMLVL
ANKDYSLQPTYTPPDLVRPNVTFSFGSQQVEKAQLRKEAATALEEMFVAANKDGKKLFAVSGYRSYKRQQEVFQAEVNAK
GDQKAREAVAYPGTSEHQTGLAMDISSENQSYELTEAFGTTPEGKWLQENAHNYGFILRYMKGREAITKYQYESWHYRYV
GKDAATIIYENNWTLEEFFEHVKALQKKVDAAK

Specific function: Unknown

COG id: COG1876

COG function: function code M; D-alanyl-D-alanine carboxypeptidase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M15B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009045
- InterPro:   IPR003709 [H]

Pfam domain/function: PF02557 VanY [H]

EC number: NA

Molecular weight: Translated: 31081; Mature: 30950

Theoretical pI: Translated: 5.26; Mature: 5.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSLLTIALAVSISCVHTVEDQYFGGTNADSIAKVEQKSSGNQTLAELEKDPLYPYIDKQ
CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCC
NKLTEKDGIKYIENEENMLVLANKDYSLQPTYTPPDLVRPNVTFSFGSQQVEKAQLRKEA
CCCCHHCCCEEEECCCCEEEEECCCCCCCCCCCCHHHCCCCEEEECCHHHHHHHHHHHHH
ATALEEMFVAANKDGKKLFAVSGYRSYKRQQEVFQAEVNAKGDQKAREAVAYPGTSEHQT
HHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCC
GLAMDISSENQSYELTEAFGTTPEGKWLQENAHNYGFILRYMKGREAITKYQYESWHYRY
CEEEEECCCCCCEEHHHHHCCCCCCCHHHHCCCCCEEEEEEHHCHHHHHHHHCCCEEEEE
VGKDAATIIYENNWTLEEFFEHVKALQKKVDAAK
ECCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SSLLTIALAVSISCVHTVEDQYFGGTNADSIAKVEQKSSGNQTLAELEKDPLYPYIDKQ
CHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCC
NKLTEKDGIKYIENEENMLVLANKDYSLQPTYTPPDLVRPNVTFSFGSQQVEKAQLRKEA
CCCCHHCCCEEEECCCCEEEEECCCCCCCCCCCCHHHCCCCEEEECCHHHHHHHHHHHHH
ATALEEMFVAANKDGKKLFAVSGYRSYKRQQEVFQAEVNAKGDQKAREAVAYPGTSEHQT
HHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCC
GLAMDISSENQSYELTEAFGTTPEGKWLQENAHNYGFILRYMKGREAITKYQYESWHYRY
CEEEEECCCCCCEEHHHHHCCCCCCCHHHHCCCCCEEEEEEHHCHHHHHHHHCCCEEEEE
VGKDAATIIYENNWTLEEFFEHVKALQKKVDAAK
ECCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]