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The map label for this gene is yshB [H]

Identifier: 226223830

GI number: 226223830

Start: 1235401

End: 1235943

Strand: Direct

Name: yshB [H]

Synonym: Lm4b_01235

Alternate gene names: 226223830

Gene position: 1235401-1235943 (Clockwise)

Preceding gene: 226223829

Following gene: 226223831

Centisome position: 42.41

GC content: 35.36

Gene sequence:

>543_bases
ATGATTTTAAATGCGATTATTTTAATTTTACTTGTTTGCGGCTTTTTCGCAGGATTTAGAACAGGCCTTATCAAACAACT
TATCTTATTATTAGGTTATATTTTGGCATTTTTTATCTCGTATACGTATTACGAAGATTTAGCGCCACATTTAACGTTTA
TACCTTATCCAGGTAGTGATACTGCAGATGGATTATCCATTATTTTACAAGAATTACGAACAGAAACGGCCTATTATAAC
GTACTTGGATTTGCGATTATTTTTATTGTCGCAATCATTGTCGTTCATATGCTTGCATCACTTGTTGGTGGCTTGACTAA
GATTCCAGTCCTGCGCCAAATTAATGGATTGTTAGCAGCTGTTTTTGGTGTTGTTAAGTCCTACTTAATTATTTTTGTTG
TCTTGTTCATCATGGCAATTTACCCGGCGAATTGGTCTGAAAACCTTATTGATAGCTCAACGGTTGCCCAGTGGATGCTT
GAAAACACGCCAATTTTATCCGAACAATTTTATGACTGGATGACAGACATTCTGCCAAAATAA

Upstream 100 bases:

>100_bases
CTGTACTGACAGCTGTGAATGCGACACACGATTACTTAAAACTAGAACAAAAATATCTAGAGTTAGAGCAAGAACTGGCT
CGAATTAAAGGAAGAGATTA

Downstream 100 bases:

>100_bases
AAGAAACATTCGATACCAGATGTATACTCTTAGCCAATTTTGGATAGGATTTCTCTGGTATTTTTTAATGATTTTACAGG
GAGGAATAAAGATGGCTACT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 180; Mature: 180

Protein sequence:

>180_residues
MILNAIILILLVCGFFAGFRTGLIKQLILLLGYILAFFISYTYYEDLAPHLTFIPYPGSDTADGLSIILQELRTETAYYN
VLGFAIIFIVAIIVVHMLASLVGGLTKIPVLRQINGLLAAVFGVVKSYLIIFVVLFIMAIYPANWSENLIDSSTVAQWML
ENTPILSEQFYDWMTDILPK

Sequences:

>Translated_180_residues
MILNAIILILLVCGFFAGFRTGLIKQLILLLGYILAFFISYTYYEDLAPHLTFIPYPGSDTADGLSIILQELRTETAYYN
VLGFAIIFIVAIIVVHMLASLVGGLTKIPVLRQINGLLAAVFGVVKSYLIIFVVLFIMAIYPANWSENLIDSSTVAQWML
ENTPILSEQFYDWMTDILPK
>Mature_180_residues
MILNAIILILLVCGFFAGFRTGLIKQLILLLGYILAFFISYTYYEDLAPHLTFIPYPGSDTADGLSIILQELRTETAYYN
VLGFAIIFIVAIIVVHMLASLVGGLTKIPVLRQINGLLAAVFGVVKSYLIIFVVLFIMAIYPANWSENLIDSSTVAQWML
ENTPILSEQFYDWMTDILPK

Specific function: Unknown

COG id: COG1286

COG function: function code R; Uncharacterized membrane protein, required for colicin V production

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003825 [H]

Pfam domain/function: PF02674 Colicin_V [H]

EC number: NA

Molecular weight: Translated: 20163; Mature: 20163

Theoretical pI: Translated: 4.50; Mature: 4.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILNAIILILLVCGFFAGFRTGLIKQLILLLGYILAFFISYTYYEDLAPHLTFIPYPGSD
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCC
TADGLSIILQELRTETAYYNVLGFAIIFIVAIIVVHMLASLVGGLTKIPVLRQINGLLAA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
VFGVVKSYLIIFVVLFIMAIYPANWSENLIDSSTVAQWMLENTPILSEQFYDWMTDILPK
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MILNAIILILLVCGFFAGFRTGLIKQLILLLGYILAFFISYTYYEDLAPHLTFIPYPGSD
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCC
TADGLSIILQELRTETAYYNVLGFAIIFIVAIIVVHMLASLVGGLTKIPVLRQINGLLAA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
VFGVVKSYLIIFVVLFIMAIYPANWSENLIDSSTVAQWMLENTPILSEQFYDWMTDILPK
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]