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The map label for this gene is cbiD

Identifier: 226223794

GI number: 226223794

Start: 1200464

End: 1201585

Strand: Direct

Name: cbiD

Synonym: Lm4b_01198

Alternate gene names: 226223794

Gene position: 1200464-1201585 (Clockwise)

Preceding gene: 226223793

Following gene: 226223795

Centisome position: 41.21

GC content: 43.4

Gene sequence:

>1122_bases
ATGGAAGATTTTATTTATTATAACGGCAAAAAATACCGTAAAGGCTATACGACTGGTACGTGTGCGGCTGCTGCTGCTAA
AGCTTGTGTGGAAATGATTCTAACGCAAGAAGAAGTGAGTGCAGTACAAGTCACAACTACTGGCGGAACGATTCTGGAAA
TCCCCGTGGCGTATCAAAAGTTTTCGAAAGACAAAGCCACAGCAGCGGTTCAAAAAGATGGTGGCGATGATATTGATGCG
ACACACGGAATGTGGATTTTTGTAGATGTTGATCTAACCGATAACGCGGAAGTCGTATTAGATGGTGGTGTTGGTATCGG
TCGCGCTACACAAAAAGGAATTTCTGTTGCAGTGGGAGAAGCGGCGATTAATCCGGCACCGCGGAAAAATATTTTAGCAA
CCGTACGCGAATCGCTTGGCGAAAATCGTGGTGCAAAGATACTAGTCTATGCACCAGAAGGAGAAGAGCGCGCGAAACGA
ACCATGAATAGCAACTTAGGGATTATCGGTGGAATTTCTATTTTAGGAACGACTGGCATTGTTACCCCTATGTCGGATGA
AGGCTGGAAAAAATCCTTATCGATGGAGCTTGAAATGAAACGGAATCAAGGTCTCGACCAAATTATTCTTGTTCCCGGTA
ATTACGGGGATGATTTTGTTCAGAATACGCTTGGTTTTTCAAGCGGAAATATTGTTTCCATGAGTAATTTCGTTGGTTAT
ATGTTAAAAGAAACACAGCGTCTAGCTTTCAAAAAAGTGCTAATGGTTGGTCATTTTGGCAAATTGGTGAAGGTTTCAGC
AGGGATTTTTACGACGTACAGTAAAGATGCAGATGCGCGGGCGGAAATTTTAGTCGCTAATTTAGCTTTGCTCGGCGCCC
CGTTATCGCTTTTACAAGCAGTGGAGAAGTGCAATACGACAGAGGCAGCAGGCGAATTAATTGAAGAAGCTGGCTTTACC
CAAGTATATGACGTCATTGTGCAAAAAATCAAAGCAAGATCAGAACGATTTTTGAAATTCACGAAACCTAGTGTGGAAGT
CGATGTAGTTACTTTTTCGACCGAACGTGGGTTGCTTGCTGCAACGAAAGATATCGATGTACTCCGGGAGGAATGGCGAT
GA

Upstream 100 bases:

>100_bases
TATCCCAGCCATTGTCGCACGCGGTAGAAAAGGCGGTAGTAATCTTGCTGCAGCTATCATTAATGCAATCTTGATTACGA
TGTAAAGAAGGCGACGAGTA

Downstream 100 bases:

>100_bases
TTACAGTAGTTGGGATTGGACCAGGAGATACAAATTTGGTAATAAACGAAGCAAAACAAGTGTTAAGTACCGCCGAAATA
GTGTATGGATCAACAAGACA

Product: cobalt-precorrin-6A synthase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 373; Mature: 373

Protein sequence:

>373_residues
MEDFIYYNGKKYRKGYTTGTCAAAAAKACVEMILTQEEVSAVQVTTTGGTILEIPVAYQKFSKDKATAAVQKDGGDDIDA
THGMWIFVDVDLTDNAEVVLDGGVGIGRATQKGISVAVGEAAINPAPRKNILATVRESLGENRGAKILVYAPEGEERAKR
TMNSNLGIIGGISILGTTGIVTPMSDEGWKKSLSMELEMKRNQGLDQIILVPGNYGDDFVQNTLGFSSGNIVSMSNFVGY
MLKETQRLAFKKVLMVGHFGKLVKVSAGIFTTYSKDADARAEILVANLALLGAPLSLLQAVEKCNTTEAAGELIEEAGFT
QVYDVIVQKIKARSERFLKFTKPSVEVDVVTFSTERGLLAATKDIDVLREEWR

Sequences:

>Translated_373_residues
MEDFIYYNGKKYRKGYTTGTCAAAAAKACVEMILTQEEVSAVQVTTTGGTILEIPVAYQKFSKDKATAAVQKDGGDDIDA
THGMWIFVDVDLTDNAEVVLDGGVGIGRATQKGISVAVGEAAINPAPRKNILATVRESLGENRGAKILVYAPEGEERAKR
TMNSNLGIIGGISILGTTGIVTPMSDEGWKKSLSMELEMKRNQGLDQIILVPGNYGDDFVQNTLGFSSGNIVSMSNFVGY
MLKETQRLAFKKVLMVGHFGKLVKVSAGIFTTYSKDADARAEILVANLALLGAPLSLLQAVEKCNTTEAAGELIEEAGFT
QVYDVIVQKIKARSERFLKFTKPSVEVDVVTFSTERGLLAATKDIDVLREEWR
>Mature_373_residues
MEDFIYYNGKKYRKGYTTGTCAAAAAKACVEMILTQEEVSAVQVTTTGGTILEIPVAYQKFSKDKATAAVQKDGGDDIDA
THGMWIFVDVDLTDNAEVVLDGGVGIGRATQKGISVAVGEAAINPAPRKNILATVRESLGENRGAKILVYAPEGEERAKR
TMNSNLGIIGGISILGTTGIVTPMSDEGWKKSLSMELEMKRNQGLDQIILVPGNYGDDFVQNTLGFSSGNIVSMSNFVGY
MLKETQRLAFKKVLMVGHFGKLVKVSAGIFTTYSKDADARAEILVANLALLGAPLSLLQAVEKCNTTEAAGELIEEAGFT
QVYDVIVQKIKARSERFLKFTKPSVEVDVVTFSTERGLLAATKDIDVLREEWR

Specific function: May catalyze the methylation of C-1 in cobalt-precorrin- 5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A [H]

COG id: COG1903

COG function: function code H; Cobalamin biosynthesis protein CbiD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CbiD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002748 [H]

Pfam domain/function: PF01888 CbiD [H]

EC number: NA

Molecular weight: Translated: 40285; Mature: 40285

Theoretical pI: Translated: 5.18; Mature: 5.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEDFIYYNGKKYRKGYTTGTCAAAAAKACVEMILTQEEVSAVQVTTTGGTILEIPVAYQK
CCCEEEECCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEEECHHHHH
FSKDKATAAVQKDGGDDIDATHGMWIFVDVDLTDNAEVVLDGGVGIGRATQKGISVAVGE
HCCCHHHEEEECCCCCCCCCCCCEEEEEEEEECCCCEEEEECCCCCCCHHHCCCEEEECC
AAINPAPRKNILATVRESLGENRGAKILVYAPEGEERAKRTMNSNLGIIGGISILGTTGI
HHCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHCCCCCEEECHHHHCCCCC
VTPMSDEGWKKSLSMELEMKRNQGLDQIILVPGNYGDDFVQNTLGFSSGNIVSMSNFVGY
CCCCCCCCHHHHCCEEEEECCCCCCCEEEEECCCCCHHHHHHHCCCCCCCEEEHHHHHHH
MLKETQRLAFKKVLMVGHFGKLVKVSAGIFTTYSKDADARAEILVANLALLGAPLSLLQA
HHHHHHHHHHHHHHHHHCCCCCEEEECCEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHH
VEKCNTTEAAGELIEEAGFTQVYDVIVQKIKARSERFLKFTKPSVEVDVVTFSTERGLLA
HHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHEEECCCCEEEEEEEEECCCCCEE
ATKDIDVLREEWR
ECHHHHHHHHHCC
>Mature Secondary Structure
MEDFIYYNGKKYRKGYTTGTCAAAAAKACVEMILTQEEVSAVQVTTTGGTILEIPVAYQK
CCCEEEECCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEEECHHHHH
FSKDKATAAVQKDGGDDIDATHGMWIFVDVDLTDNAEVVLDGGVGIGRATQKGISVAVGE
HCCCHHHEEEECCCCCCCCCCCCEEEEEEEEECCCCEEEEECCCCCCCHHHCCCEEEECC
AAINPAPRKNILATVRESLGENRGAKILVYAPEGEERAKRTMNSNLGIIGGISILGTTGI
HHCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHCCCCCEEECHHHHCCCCC
VTPMSDEGWKKSLSMELEMKRNQGLDQIILVPGNYGDDFVQNTLGFSSGNIVSMSNFVGY
CCCCCCCCHHHHCCEEEEECCCCCCCEEEEECCCCCHHHHHHHCCCCCCCEEEHHHHHHH
MLKETQRLAFKKVLMVGHFGKLVKVSAGIFTTYSKDADARAEILVANLALLGAPLSLLQA
HHHHHHHHHHHHHHHHHCCCCCEEEECCEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHH
VEKCNTTEAAGELIEEAGFTQVYDVIVQKIKARSERFLKFTKPSVEVDVVTFSTERGLLA
HHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHEEECCCCEEEEEEEEECCCCCEE
ATKDIDVLREEWR
ECHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11679669 [H]