Click here to switch to the map view.

The map label for this gene is ccmL [H]

Identifier: 226223785

GI number: 226223785

Start: 1193387

End: 1193656

Strand: Direct

Name: ccmL [H]

Synonym: Lm4b_01189

Alternate gene names: 226223785

Gene position: 1193387-1193656 (Clockwise)

Preceding gene: 226223784

Following gene: 226223786

Centisome position: 40.97

GC content: 46.3

Gene sequence:

>270_bases
ATGCAAATTGGAAAAGTTACCGGGAGTTTATGGGCAACAAGAAAAGACGAAAAACTGAATGGTTTAAAACTACTACTAGT
AGAGATTTGTACCGATGAAACGGAAGATGTAAGACATTCCATAGTGGCAGCTGATAATGCCGGAGCAGGAAACGGCGATC
TTGTGCTCGTTACAACTGGTAGCGCAGCACGAGCATCCACTGGGGACAACACGATCCCAGTGGACGCATGTATCGTCGGC
ATTATCGACTCGGTAGAACGTTATGGCTGA

Upstream 100 bases:

>100_bases
AATTCATTTTGCCTAAAGGAAGTTTCTTAACACCACTTGCAAAAGATTACTTACAGGAAAAACGAATTAGCATTAAAGAA
AGTTAGGAAGGAAGAGCGGC

Downstream 100 bases:

>100_bases
ACAGTCCTTAGGTATTCTTGAACTCAGGAGTATAAGTAAAGGGTACGAAATGGCCGATGTTTTCTTGAAAGCAGGCAATG
TAACTTTATTTACTTTTCGT

Product: carbon dioxide concentrating mechanism protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 89; Mature: 89

Protein sequence:

>89_residues
MQIGKVTGSLWATRKDEKLNGLKLLLVEICTDETEDVRHSIVAADNAGAGNGDLVLVTTGSAARASTGDNTIPVDACIVG
IIDSVERYG

Sequences:

>Translated_89_residues
MQIGKVTGSLWATRKDEKLNGLKLLLVEICTDETEDVRHSIVAADNAGAGNGDLVLVTTGSAARASTGDNTIPVDACIVG
IIDSVERYG
>Mature_89_residues
MQIGKVTGSLWATRKDEKLNGLKLLLVEICTDETEDVRHSIVAADNAGAGNGDLVLVTTGSAARASTGDNTIPVDACIVG
IIDSVERYG

Specific function: May Be Involved In The Formation Of A Specific Microcompartiment In The Cell In Which The Metabolism Of Potentially Toxic By-Products Takes Place. [C]

COG id: COG4576

COG function: function code QC; Carbon dioxide concentrating mechanism/carboxysome shell protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli and S.typhimurium CchB [H]

Homologues:

Organism=Escherichia coli, GI1788798, Length=85, Percent_Identity=40, Blast_Score=62, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004992
- ProDom:   PD012510 [H]

Pfam domain/function: PF03319 EutN_CcmL [H]

EC number: NA

Molecular weight: Translated: 9272; Mature: 9272

Theoretical pI: Translated: 4.36; Mature: 4.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIGKVTGSLWATRKDEKLNGLKLLLVEICTDETEDVRHSIVAADNAGAGNGDLVLVTTG
CCCCCCCCCEECCCCCCCCCCCEEEEEECCCCCCHHHHHHEEECCCCCCCCCCEEEEECC
SAARASTGDNTIPVDACIVGIIDSVERYG
CCCCCCCCCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQIGKVTGSLWATRKDEKLNGLKLLLVEICTDETEDVRHSIVAADNAGAGNGDLVLVTTG
CCCCCCCCCEECCCCCCCCCCCEEEEEECCCCCCHHHHHHEEECCCCCCCCCCEEEEECC
SAARASTGDNTIPVDACIVGIIDSVERYG
CCCCCCCCCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]