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The map label for this gene is rnfC [H]

Identifier: 226223743

GI number: 226223743

Start: 1156597

End: 1157952

Strand: Direct

Name: rnfC [H]

Synonym: Lm4b_01147

Alternate gene names: 226223743

Gene position: 1156597-1157952 (Clockwise)

Preceding gene: 226223742

Following gene: 226223744

Centisome position: 39.71

GC content: 39.9

Gene sequence:

>1356_bases
ATGTCCATTTTAGAAAAGATTAAAGATGCCGGAGTTGTTGGTTGTGGTGGAGCGGGCTTTCCGACCCATGCCAAATTTAG
CGGTGAAGTGGAATACTTAATTATTAACGCAGCGGAATGTGAACCGCTCCTAAAAACAGATCATTTTGTCATGAGAAACC
ATGCAGTAGAAACGATTAAAGCAATTGAAATGGTTAAAAGCCAAGTAGGTGCAGAATTTGCCGTTATTGCAACAAAACGG
TATTACACAGAGGAAATTGCGGCTTTACGGTCAGCAATTACAGAACTAGATGCAAGTGTGACAATACATGAGATGGATAA
TGTCTATCCGACTGGTGATGAGCAAGTCATGGTCTTTGAAGTGACTGGACGCGTTGTGCCACCAAGCGGTATTCCACTAA
TGGTTGGCTGTATTGTATCGAATGTCTCGACAATGTGGAACGTCTTTCATGCAATTCAAGATGACGCACCAGTTGTTCGT
AAACAGCTGACAGTAACTGGAGCAGTTGGAGAGCCGAAACTTTTAGATGTCCCAGTTGGAACGCCATTTGAAGTCTGTTT
AGCAGCAGCTGGTGGAACTAATTTAGACGAGTATTTATTTTTAGATGGTGGACCAATGATGGGGAAATTAAATGACAAGT
CTACCATTGCTGAAAAAGTAGTAACGAAAACAACTTCGGGTTTGATTGTGGCAGAGGATACTGGTTATCTGCACAAGCTA
CATTACCAAACAGTGGAACAAATTTTTAATGAAACAAAATCGGCTTGTATTCAGTGTTCACTTTGTTCGGATTTATGTCC
AAGAAAACAATTAGGTCACGATATTCATCCGCATAAAGTTATGCGCCATTTCGCGGTTGCAGAAGATATAACGGATATTA
AACCAGATCCGATTTGGGAAGAAGCGATGATTTGCTGTGAATGTGGCATTTGTGAGGTAATTGCTTGTCCGATGGGGCTC
TCACCGCGCCAAGTAAATATTCATGTGAAAAAAGAACTTTTAAAACAAGGCGTTCGTTATCAAACTGATAAAAAAGAATT
TACGCCTGATCCGATGCGTGAATATAAATCAATTGCTCCCAAAAATATTCTAATCAAAATGGGCTTACAACAATATGCAG
ACGTTCATTTAGAAACAATGCATTATCTAGATGTAGATGAAGTATTTATCCCAACGAAAATGCATATTGGCGCGCCGTCT
ATTCCAGTAGTAAGTGAAGGGGACATCGTGAAAAAAGGTGATTTAATTGCGAAAATTCCTGATGCTGCTCTTGGGGCAAA
TATCCATGCAAGTATTGACGGTCAAATTATTCGTATAACCGAAGAACAAGTTCATATTAAGAAGGTGATGTCATGA

Upstream 100 bases:

>100_bases
TTGCTCTCTTTTAGGTTGCAAAATTTTACTATAGATTTTGGAATGTAAACGCTCTATCATTGAAGTATACTGAAAAACTA
TTAAGAGGGTGTTGAGCCAA

Downstream 100 bases:

>100_bases
AAATGGATACATTAGGATTTCTCGAATTAAATAGTATTTCGAAAGGCATCGAGGCGGTTGACACAATGCTAAAAGCGGCC
AACTCCGAATTGATTTATGC

Product: PduS protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 451; Mature: 450

Protein sequence:

>451_residues
MSILEKIKDAGVVGCGGAGFPTHAKFSGEVEYLIINAAECEPLLKTDHFVMRNHAVETIKAIEMVKSQVGAEFAVIATKR
YYTEEIAALRSAITELDASVTIHEMDNVYPTGDEQVMVFEVTGRVVPPSGIPLMVGCIVSNVSTMWNVFHAIQDDAPVVR
KQLTVTGAVGEPKLLDVPVGTPFEVCLAAAGGTNLDEYLFLDGGPMMGKLNDKSTIAEKVVTKTTSGLIVAEDTGYLHKL
HYQTVEQIFNETKSACIQCSLCSDLCPRKQLGHDIHPHKVMRHFAVAEDITDIKPDPIWEEAMICCECGICEVIACPMGL
SPRQVNIHVKKELLKQGVRYQTDKKEFTPDPMREYKSIAPKNILIKMGLQQYADVHLETMHYLDVDEVFIPTKMHIGAPS
IPVVSEGDIVKKGDLIAKIPDAALGANIHASIDGQIIRITEEQVHIKKVMS

Sequences:

>Translated_451_residues
MSILEKIKDAGVVGCGGAGFPTHAKFSGEVEYLIINAAECEPLLKTDHFVMRNHAVETIKAIEMVKSQVGAEFAVIATKR
YYTEEIAALRSAITELDASVTIHEMDNVYPTGDEQVMVFEVTGRVVPPSGIPLMVGCIVSNVSTMWNVFHAIQDDAPVVR
KQLTVTGAVGEPKLLDVPVGTPFEVCLAAAGGTNLDEYLFLDGGPMMGKLNDKSTIAEKVVTKTTSGLIVAEDTGYLHKL
HYQTVEQIFNETKSACIQCSLCSDLCPRKQLGHDIHPHKVMRHFAVAEDITDIKPDPIWEEAMICCECGICEVIACPMGL
SPRQVNIHVKKELLKQGVRYQTDKKEFTPDPMREYKSIAPKNILIKMGLQQYADVHLETMHYLDVDEVFIPTKMHIGAPS
IPVVSEGDIVKKGDLIAKIPDAALGANIHASIDGQIIRITEEQVHIKKVMS
>Mature_450_residues
SILEKIKDAGVVGCGGAGFPTHAKFSGEVEYLIINAAECEPLLKTDHFVMRNHAVETIKAIEMVKSQVGAEFAVIATKRY
YTEEIAALRSAITELDASVTIHEMDNVYPTGDEQVMVFEVTGRVVPPSGIPLMVGCIVSNVSTMWNVFHAIQDDAPVVRK
QLTVTGAVGEPKLLDVPVGTPFEVCLAAAGGTNLDEYLFLDGGPMMGKLNDKSTIAEKVVTKTTSGLIVAEDTGYLHKLH
YQTVEQIFNETKSACIQCSLCSDLCPRKQLGHDIHPHKVMRHFAVAEDITDIKPDPIWEEAMICCECGICEVIACPMGLS
PRQVNIHVKKELLKQGVRYQTDKKEFTPDPMREYKSIAPKNILIKMGLQQYADVHLETMHYLDVDEVFIPTKMHIGAPSI
PVVSEGDIVKKGDLIAKIPDAALGANIHASIDGQIIRITEEQVHIKKVMS

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4656

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfC

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787916, Length=324, Percent_Identity=28.7037037037037, Blast_Score=123, Evalue=3e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010208
- InterPro:   IPR012285
- InterPro:   IPR009051
- InterPro:   IPR011538
- InterPro:   IPR019554 [H]

Pfam domain/function: PF01512 Complex1_51K; PF10531 SLBB [H]

EC number: NA

Molecular weight: Translated: 49488; Mature: 49357

Theoretical pI: Translated: 5.55; Mature: 5.55

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSILEKIKDAGVVGCGGAGFPTHAKFSGEVEYLIINAAECEPLLKTDHFVMRNHAVETIK
CCHHHHHHHCCEEECCCCCCCCCCCCCCCEEEEEEECCCCCCHHHCCHHHHHHHHHHHHH
AIEMVKSQVGAEFAVIATKRYYTEEIAALRSAITELDASVTIHEMDNVYPTGDEQVMVFE
HHHHHHHHHCCEEEEEEEHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEEE
VTGRVVPPSGIPLMVGCIVSNVSTMWNVFHAIQDDAPVVRKQLTVTGAVGEPKLLDVPVG
ECCCEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHEEEEEECCCCCEEEEECCC
TPFEVCLAAAGGTNLDEYLFLDGGPMMGKLNDKSTIAEKVVTKTTSGLIVAEDTGYLHKL
CCHHHHEEECCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHH
HYQTVEQIFNETKSACIQCSLCSDLCPRKQLGHDIHPHKVMRHFAVAEDITDIKPDPIWE
HHHHHHHHHHHHHHHHEEEHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHH
EAMICCECGICEVIACPMGLSPRQVNIHVKKELLKQGVRYQTDKKEFTPDPMREYKSIAP
HHHHHHHCCCHHHHCCCCCCCCCEEEEEEHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCC
KNILIKMGLQQYADVHLETMHYLDVDEVFIPTKMHIGAPSIPVVSEGDIVKKGDLIAKIP
CHHEEECCHHHHHHHHHHHHEECCCCCEEECCEEECCCCCCCEECCCCEEECCCEEEECC
DAALGANIHASIDGQIIRITEEQVHIKKVMS
CHHHCCCEEEECCCEEEEEEHHHHHHHHHCC
>Mature Secondary Structure 
SILEKIKDAGVVGCGGAGFPTHAKFSGEVEYLIINAAECEPLLKTDHFVMRNHAVETIK
CHHHHHHHCCEEECCCCCCCCCCCCCCCEEEEEEECCCCCCHHHCCHHHHHHHHHHHHH
AIEMVKSQVGAEFAVIATKRYYTEEIAALRSAITELDASVTIHEMDNVYPTGDEQVMVFE
HHHHHHHHHCCEEEEEEEHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEEE
VTGRVVPPSGIPLMVGCIVSNVSTMWNVFHAIQDDAPVVRKQLTVTGAVGEPKLLDVPVG
ECCCEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHEEEEEECCCCCEEEEECCC
TPFEVCLAAAGGTNLDEYLFLDGGPMMGKLNDKSTIAEKVVTKTTSGLIVAEDTGYLHKL
CCHHHHEEECCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHH
HYQTVEQIFNETKSACIQCSLCSDLCPRKQLGHDIHPHKVMRHFAVAEDITDIKPDPIWE
HHHHHHHHHHHHHHHHEEEHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHH
EAMICCECGICEVIACPMGLSPRQVNIHVKKELLKQGVRYQTDKKEFTPDPMREYKSIAP
HHHHHHHCCCHHHHCCCCCCCCCEEEEEEHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCC
KNILIKMGLQQYADVHLETMHYLDVDEVFIPTKMHIGAPSIPVVSEGDIVKKGDLIAKIP
CHHEEECCHHHHHHHHHHHHEECCCCCEEECCEEECCCCCCCEECCCCEEECCCEEEECC
DAALGANIHASIDGQIIRITEEQVHIKKVMS
CHHHCCCEEEECCCEEEEEEHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: 4Fe-4S clusters [C]

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]