| Definition | Listeria monocytogenes Clip81459, complete genome. |
|---|---|
| Accession | NC_012488 |
| Length | 2,912,690 |
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The map label for this gene is 226223691
Identifier: 226223691
GI number: 226223691
Start: 1105085
End: 1107091
Strand: Reverse
Name: 226223691
Synonym: Lm4b_01093
Alternate gene names: NA
Gene position: 1107091-1105085 (Counterclockwise)
Preceding gene: 226223696
Following gene: 226223683
Centisome position: 38.01
GC content: 31.89
Gene sequence:
>2007_bases ATGAAATTTTATATTAAGGAAATTCAGCTAACAGATTCTAACACATGGAAATTACAAGGCTTCTCAGAAGGAAAAATCAA TAGTATCCAAGCATACTACAACGAAATCCGAGAATATAAGCACCCTGAACAAAAGTTGAATATTGCTTTTACTCAAGATA AAAATTCATTCACAGCTACTATTTCTGTTGATGAACTTGCTAGTCTTTCTCTACCAAATAACCAGACTGTGTGGAAATTC AAAGTAAATAATGATTATCCATATACACATTTAATCACAGATGGGCCAATTATAAATAAACCCTTCCAACCAGAGAACTC GCTTTACAAATACCATTTTGATTTTCCTGAAGGTATTTTAACACTTGTCAGTAAACCTATAGAACTACTAGCTTCGATAG AGGAGTACAAATTAGATTCTGATGTGATGTCTGGTTCTATTAAAATCAAGTCGCCACTTCCAAGTAACCAATTTAATGCA AAGCTAATTTTCAAACGTAGACCTACACCAAGCTTTTATTTATTTCACGAGCAACAACAATCATTTGATTTAGGGCTTAT TACTGAAAATATCGTTAATTTTTCTATTCCCACCAAAGATTTATCTACAGCTTTCTTAGTAGACAATACAAATATACTAG ATGCCATAATCGAAGTATCATCTAGTCATAACAAAACAGGCTTATCTGCATTCATATCCATTGATGCAGATATGAAGCCA GCTATTCCTAGAGAAATTAAAATAGCAGCGCCACTTTTTGCAACTCTGCGCTCCTATATTACAGGCTCTAACAGATTATC ATTCTATTTCAAAAAAAATATTCAGGGGTTAGTGAGTCTGAGTCAATTAAAAGAAACTAAAAAAGATTTGACACTGCAAT TCAAATTAGAAAACAGTATCTCTGAAGGTCAAATAGTAGCTAAACGTGCAGATAAAAAAGCGAATACATTTGAATATAAT GTAGAACAAGTATGGCCTTTAAAGAAAGGGATTACTAAATATACTGCTCAAATTAATAAAAATGAATTCTTATCCGGACC AATCAATAGAGCTGATGCGACATGGGATTTCTTCCTTCGTTTGGCAAACATGCCAGATTTACCTATTTTAGCGCCAAATA CTATTGACTTTAGTTCTTCGGGATTTTTCAATGTTGCTAATAACGAATTTATGGCGCAATTAACAAGAAACGACTCCAAT AATTTAGCTTGTCTTACAGCCGTTGCTCCTAAAATCAAACAAGATATAACAAAAATAGCTGTAATGGGAACTTGTTTTAG CCGAAATGCTTTTAACTCATCTCCATTCTTTAATCCAGATTATAAAGCTTTTTTTGAATGCAGTTTTACGCAGTTTCATT CTTCTATAATTAGTATAATGACCGAACCCGCTAACTTAATTAATCTAGATAAGTATACTGATATTAAAAAAAGCGAGAAA CCTTTTATAGAAGATGATTGGAAAAAAGATTTCTTTACTAACCTGAAAAATTCTGACGCTGATTATTTCTTAATTGACCT ATATCCTGATGTTATTCGACCAGTTATTTGGTTAAATAATAATTCAGCTATTACATTATCTTATGTTATAGAACAAAGCC AATTACTTAATGACATTTCTTACGAGAGAATTTTAGATCATATTGATAATGAAACCTACTTCAATGAGTGGAAAGGCTAT GCTGATCAATTTATCGAAAAACTTACAGAAATAATTCCTACTGATCGGGTTATTTTAAACCTAGGTGGATTTACAACGTC TTATTATGATGAAGATGGAGAAGTCGCAACTTACAAAAACAAAATGGCCATCGAAAAGAATAATTACTTCTGGGAACGTT TAAATAATTATTTCTTATCTAAATTGCCTGAAGCAAAAGTAATCGACTTTTCGAAAAAAGGCTATATAGGTGATTTCAAC TATCCATTTGGGCATTCCTTTTCTCACTTCGAATCCCCTTATTATAAAGACTTCTTGAAGGAACTTATTTACATCACTAA ATCTTAA
Upstream 100 bases:
>100_bases TAATATGGAGACCTCTTTAATTCAATTAATTATTGTAGGGAATTTTATCAATATATGCTAAAATATACAATATGATAATA AAAATTTTAAGGAGTTAAAG
Downstream 100 bases:
>100_bases TCTATAATCATATAAAAACAGAGTGAGAAATCTCACTCTGTTTTTATATGATTATTTTTAGTCTATTTAACGTTTGTAAA AGCTCGTTTATCTACCCAAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 668; Mature: 668
Protein sequence:
>668_residues MKFYIKEIQLTDSNTWKLQGFSEGKINSIQAYYNEIREYKHPEQKLNIAFTQDKNSFTATISVDELASLSLPNNQTVWKF KVNNDYPYTHLITDGPIINKPFQPENSLYKYHFDFPEGILTLVSKPIELLASIEEYKLDSDVMSGSIKIKSPLPSNQFNA KLIFKRRPTPSFYLFHEQQQSFDLGLITENIVNFSIPTKDLSTAFLVDNTNILDAIIEVSSSHNKTGLSAFISIDADMKP AIPREIKIAAPLFATLRSYITGSNRLSFYFKKNIQGLVSLSQLKETKKDLTLQFKLENSISEGQIVAKRADKKANTFEYN VEQVWPLKKGITKYTAQINKNEFLSGPINRADATWDFFLRLANMPDLPILAPNTIDFSSSGFFNVANNEFMAQLTRNDSN NLACLTAVAPKIKQDITKIAVMGTCFSRNAFNSSPFFNPDYKAFFECSFTQFHSSIISIMTEPANLINLDKYTDIKKSEK PFIEDDWKKDFFTNLKNSDADYFLIDLYPDVIRPVIWLNNNSAITLSYVIEQSQLLNDISYERILDHIDNETYFNEWKGY ADQFIEKLTEIIPTDRVILNLGGFTTSYYDEDGEVATYKNKMAIEKNNYFWERLNNYFLSKLPEAKVIDFSKKGYIGDFN YPFGHSFSHFESPYYKDFLKELIYITKS
Sequences:
>Translated_668_residues MKFYIKEIQLTDSNTWKLQGFSEGKINSIQAYYNEIREYKHPEQKLNIAFTQDKNSFTATISVDELASLSLPNNQTVWKF KVNNDYPYTHLITDGPIINKPFQPENSLYKYHFDFPEGILTLVSKPIELLASIEEYKLDSDVMSGSIKIKSPLPSNQFNA KLIFKRRPTPSFYLFHEQQQSFDLGLITENIVNFSIPTKDLSTAFLVDNTNILDAIIEVSSSHNKTGLSAFISIDADMKP AIPREIKIAAPLFATLRSYITGSNRLSFYFKKNIQGLVSLSQLKETKKDLTLQFKLENSISEGQIVAKRADKKANTFEYN VEQVWPLKKGITKYTAQINKNEFLSGPINRADATWDFFLRLANMPDLPILAPNTIDFSSSGFFNVANNEFMAQLTRNDSN NLACLTAVAPKIKQDITKIAVMGTCFSRNAFNSSPFFNPDYKAFFECSFTQFHSSIISIMTEPANLINLDKYTDIKKSEK PFIEDDWKKDFFTNLKNSDADYFLIDLYPDVIRPVIWLNNNSAITLSYVIEQSQLLNDISYERILDHIDNETYFNEWKGY ADQFIEKLTEIIPTDRVILNLGGFTTSYYDEDGEVATYKNKMAIEKNNYFWERLNNYFLSKLPEAKVIDFSKKGYIGDFN YPFGHSFSHFESPYYKDFLKELIYITKS >Mature_668_residues MKFYIKEIQLTDSNTWKLQGFSEGKINSIQAYYNEIREYKHPEQKLNIAFTQDKNSFTATISVDELASLSLPNNQTVWKF KVNNDYPYTHLITDGPIINKPFQPENSLYKYHFDFPEGILTLVSKPIELLASIEEYKLDSDVMSGSIKIKSPLPSNQFNA KLIFKRRPTPSFYLFHEQQQSFDLGLITENIVNFSIPTKDLSTAFLVDNTNILDAIIEVSSSHNKTGLSAFISIDADMKP AIPREIKIAAPLFATLRSYITGSNRLSFYFKKNIQGLVSLSQLKETKKDLTLQFKLENSISEGQIVAKRADKKANTFEYN VEQVWPLKKGITKYTAQINKNEFLSGPINRADATWDFFLRLANMPDLPILAPNTIDFSSSGFFNVANNEFMAQLTRNDSN NLACLTAVAPKIKQDITKIAVMGTCFSRNAFNSSPFFNPDYKAFFECSFTQFHSSIISIMTEPANLINLDKYTDIKKSEK PFIEDDWKKDFFTNLKNSDADYFLIDLYPDVIRPVIWLNNNSAITLSYVIEQSQLLNDISYERILDHIDNETYFNEWKGY ADQFIEKLTEIIPTDRVILNLGGFTTSYYDEDGEVATYKNKMAIEKNNYFWERLNNYFLSKLPEAKVIDFSKKGYIGDFN YPFGHSFSHFESPYYKDFLKELIYITKS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 76973; Mature: 76973
Theoretical pI: Translated: 5.76; Mature: 5.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKFYIKEIQLTDSNTWKLQGFSEGKINSIQAYYNEIREYKHPEQKLNIAFTQDKNSFTAT CCEEEEEEEEECCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHEEEEEEECCCCEEEE ISVDELASLSLPNNQTVWKFKVNNDYPYTHLITDGPIINKPFQPENSLYKYHFDFPEGIL EEHHHHHHCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCHHHH TLVSKPIELLASIEEYKLDSDVMSGSIKIKSPLPSNQFNAKLIFKRRPTPSFYLFHEQQQ HHHHHHHHHHHHHHHHCCCHHHHCCEEEEECCCCCCCCCEEEEEEECCCCCEEEEECCCC SFDLGLITENIVNFSIPTKDLSTAFLVDNTNILDAIIEVSSSHNKTGLSAFISIDADMKP CCCEEEEEHHHEEEECCCCCCCEEEEEECCHHHHHHHHHCCCCCCCCEEEEEEECCCCCC AIPREIKIAAPLFATLRSYITGSNRLSFYFKKNIQGLVSLSQLKETKKDLTLQFKLENSI CCCCCEEEHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHCEEEEEEECCCC SEGQIVAKRADKKANTFEYNVEQVWPLKKGITKYTAQINKNEFLSGPINRADATWDFFLR CCCEEEEECCCCCCCCEEECHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH LANMPDLPILAPNTIDFSSSGFFNVANNEFMAQLTRNDSNNLACLTAVAPKIKQDITKIA HCCCCCCCEECCCCCCCCCCCCEEECCCCEEEEEECCCCCCEEEEEHHCHHHHHHHHHHH VMGTCFSRNAFNSSPFFNPDYKAFFECSFTQFHSSIISIMTEPANLINLDKYTDIKKSEK HHHHHHCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCHHEECCHHCCCCCCCC PFIEDDWKKDFFTNLKNSDADYFLIDLYPDVIRPVIWLNNNSAITLSYVIEQSQLLNDIS CCCCCCHHHHHHHCCCCCCCCEEEEECCHHHCCCEEEECCCCEEEEEEEHHHHHHHHHCC YERILDHIDNETYFNEWKGYADQFIEKLTEIIPTDRVILNLGGFTTSYYDEDGEVATYKN HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEECCCCCEEEECC KMAIEKNNYFWERLNNYFLSKLPEAKVIDFSKKGYIGDFNYPFGHSFSHFESPYYKDFLK CEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHCCCHHHHHHHH ELIYITKS HHHHCCCC >Mature Secondary Structure MKFYIKEIQLTDSNTWKLQGFSEGKINSIQAYYNEIREYKHPEQKLNIAFTQDKNSFTAT CCEEEEEEEEECCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHEEEEEEECCCCEEEE ISVDELASLSLPNNQTVWKFKVNNDYPYTHLITDGPIINKPFQPENSLYKYHFDFPEGIL EEHHHHHHCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCHHHH TLVSKPIELLASIEEYKLDSDVMSGSIKIKSPLPSNQFNAKLIFKRRPTPSFYLFHEQQQ HHHHHHHHHHHHHHHHCCCHHHHCCEEEEECCCCCCCCCEEEEEEECCCCCEEEEECCCC SFDLGLITENIVNFSIPTKDLSTAFLVDNTNILDAIIEVSSSHNKTGLSAFISIDADMKP CCCEEEEEHHHEEEECCCCCCCEEEEEECCHHHHHHHHHCCCCCCCCEEEEEEECCCCCC AIPREIKIAAPLFATLRSYITGSNRLSFYFKKNIQGLVSLSQLKETKKDLTLQFKLENSI CCCCCEEEHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHCEEEEEEECCCC SEGQIVAKRADKKANTFEYNVEQVWPLKKGITKYTAQINKNEFLSGPINRADATWDFFLR CCCEEEEECCCCCCCCEEECHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH LANMPDLPILAPNTIDFSSSGFFNVANNEFMAQLTRNDSNNLACLTAVAPKIKQDITKIA HCCCCCCCEECCCCCCCCCCCCEEECCCCEEEEEECCCCCCEEEEEHHCHHHHHHHHHHH VMGTCFSRNAFNSSPFFNPDYKAFFECSFTQFHSSIISIMTEPANLINLDKYTDIKKSEK HHHHHHCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCHHEECCHHCCCCCCCC PFIEDDWKKDFFTNLKNSDADYFLIDLYPDVIRPVIWLNNNSAITLSYVIEQSQLLNDIS CCCCCCHHHHHHHCCCCCCCCEEEEECCHHHCCCEEEECCCCEEEEEEEHHHHHHHHHCC YERILDHIDNETYFNEWKGYADQFIEKLTEIIPTDRVILNLGGFTTSYYDEDGEVATYKN HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEECCCCCEEEECC KMAIEKNNYFWERLNNYFLSKLPEAKVIDFSKKGYIGDFNYPFGHSFSHFESPYYKDFLK CEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHCCCHHHHHHHH ELIYITKS HHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA