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The map label for this gene is yrrO [H]

Identifier: 226223579

GI number: 226223579

Start: 994954

End: 996180

Strand: Direct

Name: yrrO [H]

Synonym: Lm4b_00981

Alternate gene names: 226223579

Gene position: 994954-996180 (Clockwise)

Preceding gene: 226223578

Following gene: 226223580

Centisome position: 34.16

GC content: 40.42

Gene sequence:

>1227_bases
ATGAGTAAAATATTAAAAAAACCAGAAGTGCTAGCTCCGGCTGGCAACTTAGAAAAATTAAAAATTGCCATTCGCTATGG
TGCGGATGCTGTATATATTGGTGGTCAGGCTTTTGGTCTTCGGTCACGAGCAGGTAATTTTAGCTTTGAAGAAATGAAAG
AAGGTATCGCTTTTGCGCATGAACGAAATGCAAAAGTGTACGTTGCGGCAAATATGGTTGCGCATGCTGGTGATACAGAA
GGTGCTGGGGAATTTTTCCGAACATTACGCGATATTGGTATTGATGCAGTGATTGTATCGGATCCAGCGCTCATTAGCAT
TTGTTTTCAAGATGCGCCAGGGTTACCAGTCCACTTATCTACACAAGCCTCGGCAACAAACTATAAGACATTAGAATTTT
GGAAGAAGCAAGGTCTTGAACGAGTTGTACTTGCTCGTGAAGTTAGCATGCAAGAAATTCAAGAAATCGGCGAAAAAACG
GATGTCGAAATGGAAGCATTTATCCATGGGGCAATGTGTATTTCTTATTCTGGTCGTTGTACTTTATCAAATCATATGGC
TAATCGTGATGCGAACCGTGGCGGGTGTGCGCAAAGTTGTCGCTGGAAATATGACTTGTTTGAAATTGATAATGGTGTCT
CGAAAAATTTAGTGGATACTGATGAAGAACCGTTTTCAATGAGCGCGGTTGATTTATCAATGATTAAATACATTCCGGAT
ATGGTAAATGCTGGTGTGGATAGTTTGAAAATCGAAGGACGAATGAAGTCCATTCATTATGTTTCGACTGTCGCAAGTGT
ATACCGTCGTGCCGTAGATGCTTACTGCGCGGACCCGGAAAATTATGTATTCGATCCAGCTTGGGAAGAAGAATTATGGA
AAGTTGCACAACGCGAACTATCTACAGGATTTTTCTATAAAGAACCAACCGAGGACGAACAACTATTTGGGAAAACGCGG
AAAATTCCTCAATATGCTTTTGCGGCGCAAGTATTGGAATATGACGAGAAAACGAAAATCGCTACTTTACAGCAACGAAA
TAATTTTGGTGTTGGAGAAGAAATTGAATTTTACGGGCCAGGAGATACTGGATTTAAGCAGATTGTAGAAGTACTTTGGA
ATGAAGATGGTGTAGAAATTGACCGTGCTCCAAATGCAATGATGACCATTAAAATGCCGGTAGATAAACCTGTGAAGCCA
TTTTACTTTATGCGGAAGAAAAAATAA

Upstream 100 bases:

>100_bases
TTGTGAATAAATTAACGGAACTTCAGCCTCCAACACGAAAACTAGACGCAGGATTTTATTTGAAAAATCCGGATGATGTG
AAATAGGGGGAATAGCATAA

Downstream 100 bases:

>100_bases
AAATCTCATGTTGCAGTAGGATTGTCGTGTACTCCCTAAGTAAGGTATAATGGGGTAAGTACATATGAAGGAGGAGATTA
ATTATGATAGGATGGATTAT

Product: protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 408; Mature: 407

Protein sequence:

>408_residues
MSKILKKPEVLAPAGNLEKLKIAIRYGADAVYIGGQAFGLRSRAGNFSFEEMKEGIAFAHERNAKVYVAANMVAHAGDTE
GAGEFFRTLRDIGIDAVIVSDPALISICFQDAPGLPVHLSTQASATNYKTLEFWKKQGLERVVLAREVSMQEIQEIGEKT
DVEMEAFIHGAMCISYSGRCTLSNHMANRDANRGGCAQSCRWKYDLFEIDNGVSKNLVDTDEEPFSMSAVDLSMIKYIPD
MVNAGVDSLKIEGRMKSIHYVSTVASVYRRAVDAYCADPENYVFDPAWEEELWKVAQRELSTGFFYKEPTEDEQLFGKTR
KIPQYAFAAQVLEYDEKTKIATLQQRNNFGVGEEIEFYGPGDTGFKQIVEVLWNEDGVEIDRAPNAMMTIKMPVDKPVKP
FYFMRKKK

Sequences:

>Translated_408_residues
MSKILKKPEVLAPAGNLEKLKIAIRYGADAVYIGGQAFGLRSRAGNFSFEEMKEGIAFAHERNAKVYVAANMVAHAGDTE
GAGEFFRTLRDIGIDAVIVSDPALISICFQDAPGLPVHLSTQASATNYKTLEFWKKQGLERVVLAREVSMQEIQEIGEKT
DVEMEAFIHGAMCISYSGRCTLSNHMANRDANRGGCAQSCRWKYDLFEIDNGVSKNLVDTDEEPFSMSAVDLSMIKYIPD
MVNAGVDSLKIEGRMKSIHYVSTVASVYRRAVDAYCADPENYVFDPAWEEELWKVAQRELSTGFFYKEPTEDEQLFGKTR
KIPQYAFAAQVLEYDEKTKIATLQQRNNFGVGEEIEFYGPGDTGFKQIVEVLWNEDGVEIDRAPNAMMTIKMPVDKPVKP
FYFMRKKK
>Mature_407_residues
SKILKKPEVLAPAGNLEKLKIAIRYGADAVYIGGQAFGLRSRAGNFSFEEMKEGIAFAHERNAKVYVAANMVAHAGDTEG
AGEFFRTLRDIGIDAVIVSDPALISICFQDAPGLPVHLSTQASATNYKTLEFWKKQGLERVVLAREVSMQEIQEIGEKTD
VEMEAFIHGAMCISYSGRCTLSNHMANRDANRGGCAQSCRWKYDLFEIDNGVSKNLVDTDEEPFSMSAVDLSMIKYIPDM
VNAGVDSLKIEGRMKSIHYVSTVASVYRRAVDAYCADPENYVFDPAWEEELWKVAQRELSTGFFYKEPTEDEQLFGKTRK
IPQYAFAAQVLEYDEKTKIATLQQRNNFGVGEEIEFYGPGDTGFKQIVEVLWNEDGVEIDRAPNAMMTIKMPVDKPVKPF
YFMRKKK

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI1788397, Length=442, Percent_Identity=33.710407239819, Blast_Score=229, Evalue=3e-61,
Organism=Escherichia coli, GI87081910, Length=266, Percent_Identity=37.9699248120301, Blast_Score=184, Evalue=9e-48,
Organism=Escherichia coli, GI1789548, Length=336, Percent_Identity=32.7380952380952, Blast_Score=170, Evalue=2e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR001539 [H]

Pfam domain/function: PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 45835; Mature: 45703

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: PS01276 PEPTIDASE_U32

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKILKKPEVLAPAGNLEKLKIAIRYGADAVYIGGQAFGLRSRAGNFSFEEMKEGIAFAH
CCCHHCCCCCCCCCCCCEEEEEEEEECCCEEEECCEEEECCCCCCCCCHHHHHHHHHHHC
ERNAKVYVAANMVAHAGDTEGAGEFFRTLRDIGIDAVIVSDPALISICFQDAPGLPVHLS
CCCCEEEEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEECCCCEEEEEECCCCCCCEEEE
TQASATNYKTLEFWKKQGLERVVLAREVSMQEIQEIGEKTDVEMEAFIHGAMCISYSGRC
CCCCCCCCHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHEEEEEEECCCE
TLSNHMANRDANRGGCAQSCRWKYDLFEIDNGVSKNLVDTDEEPFSMSAVDLSMIKYIPD
EEHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHH
MVNAGVDSLKIEGRMKSIHYVSTVASVYRRAVDAYCADPENYVFDPAWEEELWKVAQREL
HHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCHHHHHHHHHHHHH
STGFFYKEPTEDEQLFGKTRKIPQYAFAAQVLEYDEKTKIATLQQRNNFGVGEEIEFYGP
HCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEHHHCCCCCCCCEEEEECC
GDTGFKQIVEVLWNEDGVEIDRAPNAMMTIKMPVDKPVKPFYFMRKKK
CCHHHHHHHHHHHCCCCCEEECCCCEEEEEECCCCCCCCCHHHHCCCC
>Mature Secondary Structure 
SKILKKPEVLAPAGNLEKLKIAIRYGADAVYIGGQAFGLRSRAGNFSFEEMKEGIAFAH
CCHHCCCCCCCCCCCCEEEEEEEEECCCEEEECCEEEECCCCCCCCCHHHHHHHHHHHC
ERNAKVYVAANMVAHAGDTEGAGEFFRTLRDIGIDAVIVSDPALISICFQDAPGLPVHLS
CCCCEEEEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEECCCCEEEEEECCCCCCCEEEE
TQASATNYKTLEFWKKQGLERVVLAREVSMQEIQEIGEKTDVEMEAFIHGAMCISYSGRC
CCCCCCCCHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHEEEEEEECCCE
TLSNHMANRDANRGGCAQSCRWKYDLFEIDNGVSKNLVDTDEEPFSMSAVDLSMIKYIPD
EEHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHH
MVNAGVDSLKIEGRMKSIHYVSTVASVYRRAVDAYCADPENYVFDPAWEEELWKVAQREL
HHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCHHHHHHHHHHHHH
STGFFYKEPTEDEQLFGKTRKIPQYAFAAQVLEYDEKTKIATLQQRNNFGVGEEIEFYGP
HCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEHHHCCCCCCCCEEEEECC
GDTGFKQIVEVLWNEDGVEIDRAPNAMMTIKMPVDKPVKPFYFMRKKK
CCHHHHHHHHHHHCCCCCEEECCCCEEEEEECCCCCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]