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The map label for this gene is yrrN [H]

Identifier: 226223578

GI number: 226223578

Start: 994031

End: 994939

Strand: Direct

Name: yrrN [H]

Synonym: Lm4b_00980

Alternate gene names: 226223578

Gene position: 994031-994939 (Clockwise)

Preceding gene: 226223577

Following gene: 226223579

Centisome position: 34.13

GC content: 39.71

Gene sequence:

>909_bases
ATGGAAATCATTGCGACAGCAGATTCAATGAAACAAGCTGAACAATTGCTTCGCGCGGGGGTAGACAGACTATATGTAGG
TAATAGCCAATTTGGTTTAAGATTGCCGCATTCATTTTCTGTCGAAGAATTACGTGAAATAGTTCATTTAGCACATCAAG
AAGGAAAGAAAGTAACTGTAGCAGTAAATTCGTTAATGCATAACGAACATATGGAAGAGTTACCGGGATTTTTAGAGCAT
CTTGCAGATATGAAAGTGGATGCAGTAACGTGCGGTGATCCAGGGGCAATTATGCTTTTGAGTGAAATGGCTCAACCGAT
TCCGTTTATTTATGACGCCCAAACATTTGTAACTAGCGCAGAACAAATCTCGTTTTGGGAAAAACAAGGAGCGATTGGTG
CGGTACTTGCTCGGGAACTAACAGAAGGCGAAATCAAAGCCATTGCAAGTAGCCTTACTATCCCAGTTGAAGTTCTGGTT
TATGGACCAACATGCATTCACCAATCGAAACGTAAACTAGTAACGAATTATGAGCGTATTGTCGAACTGGAAGATGATAC
ATCGAAGGAACGTGGTCTTTATTTACGCGAACCTAATGATGAAACAAGTCAATTACCAATCTATGAAGATGAGTCTGGAA
CACATATTTTTGCTTCCGAAGATGTTTCACTTGTCCCTTATTTGGCGGACTTATATGAGGCTGGATTGAAAACATGGAAA
CTAGATGGTGTTCTTGCAGAATCAGAGAATTTTGTTCAAATCGCATCGCTGTTAGTTGAAGCGAAAGAAGCTGTTATGAA
AGGTCAATTTGTCGCAGAGTATTTTGTGAATAAATTAACGGAACTTCAGCCTCCAACACGAAAACTAGACGCAGGATTTT
ATTTGAAAAATCCGGATGATGTGAAATAG

Upstream 100 bases:

>100_bases
TAGACTAGTCTCTTTTTTTATGCCAAAATTCTTATTGAGTAACAAGTCTTCTTGTGATACATTTATCAAGTAACGTTTTT
GTAGAAATGAGGAGAAAAAC

Downstream 100 bases:

>100_bases
GGGGAATAGCATAAATGAGTAAAATATTAAAAAAACCAGAAGTGCTAGCTCCGGCTGGCAACTTAGAAAAATTAAAAATT
GCCATTCGCTATGGTGCGGA

Product: protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MEIIATADSMKQAEQLLRAGVDRLYVGNSQFGLRLPHSFSVEELREIVHLAHQEGKKVTVAVNSLMHNEHMEELPGFLEH
LADMKVDAVTCGDPGAIMLLSEMAQPIPFIYDAQTFVTSAEQISFWEKQGAIGAVLARELTEGEIKAIASSLTIPVEVLV
YGPTCIHQSKRKLVTNYERIVELEDDTSKERGLYLREPNDETSQLPIYEDESGTHIFASEDVSLVPYLADLYEAGLKTWK
LDGVLAESENFVQIASLLVEAKEAVMKGQFVAEYFVNKLTELQPPTRKLDAGFYLKNPDDVK

Sequences:

>Translated_302_residues
MEIIATADSMKQAEQLLRAGVDRLYVGNSQFGLRLPHSFSVEELREIVHLAHQEGKKVTVAVNSLMHNEHMEELPGFLEH
LADMKVDAVTCGDPGAIMLLSEMAQPIPFIYDAQTFVTSAEQISFWEKQGAIGAVLARELTEGEIKAIASSLTIPVEVLV
YGPTCIHQSKRKLVTNYERIVELEDDTSKERGLYLREPNDETSQLPIYEDESGTHIFASEDVSLVPYLADLYEAGLKTWK
LDGVLAESENFVQIASLLVEAKEAVMKGQFVAEYFVNKLTELQPPTRKLDAGFYLKNPDDVK
>Mature_302_residues
MEIIATADSMKQAEQLLRAGVDRLYVGNSQFGLRLPHSFSVEELREIVHLAHQEGKKVTVAVNSLMHNEHMEELPGFLEH
LADMKVDAVTCGDPGAIMLLSEMAQPIPFIYDAQTFVTSAEQISFWEKQGAIGAVLARELTEGEIKAIASSLTIPVEVLV
YGPTCIHQSKRKLVTNYERIVELEDDTSKERGLYLREPNDETSQLPIYEDESGTHIFASEDVSLVPYLADLYEAGLKTWK
LDGVLAESENFVQIASLLVEAKEAVMKGQFVAEYFVNKLTELQPPTRKLDAGFYLKNPDDVK

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI87081910, Length=245, Percent_Identity=25.7142857142857, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1788397, Length=286, Percent_Identity=26.9230769230769, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1789548, Length=186, Percent_Identity=24.7311827956989, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001539 [H]

Pfam domain/function: PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 33717; Mature: 33717

Theoretical pI: Translated: 4.44; Mature: 4.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIIATADSMKQAEQLLRAGVDRLYVGNSQFGLRLPHSFSVEELREIVHLAHQEGKKVTV
CCEEECHHHHHHHHHHHHHCCHHEEECCCCCCEECCCCCCHHHHHHHHHHHHHCCCEEEE
AVNSLMHNEHMEELPGFLEHLADMKVDAVTCGDPGAIMLLSEMAQPIPFIYDAQTFVTSA
EHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHCCCCCEEEECHHHHHHH
EQISFWEKQGAIGAVLARELTEGEIKAIASSLTIPVEVLVYGPTCIHQSKRKLVTNYERI
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHE
VELEDDTSKERGLYLREPNDETSQLPIYEDESGTHIFASEDVSLVPYLADLYEAGLKTWK
EECCCCCCCCCCEEEECCCCCCCCCCEEECCCCCEEEECCCCCHHHHHHHHHHCCCCEEE
LDGVLAESENFVQIASLLVEAKEAVMKGQFVAEYFVNKLTELQPPTRKLDAGFYLKNPDD
ECCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCEEECCCCC
VK
CC
>Mature Secondary Structure
MEIIATADSMKQAEQLLRAGVDRLYVGNSQFGLRLPHSFSVEELREIVHLAHQEGKKVTV
CCEEECHHHHHHHHHHHHHCCHHEEECCCCCCEECCCCCCHHHHHHHHHHHHHCCCEEEE
AVNSLMHNEHMEELPGFLEHLADMKVDAVTCGDPGAIMLLSEMAQPIPFIYDAQTFVTSA
EHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHCCCCCEEEECHHHHHHH
EQISFWEKQGAIGAVLARELTEGEIKAIASSLTIPVEVLVYGPTCIHQSKRKLVTNYERI
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHE
VELEDDTSKERGLYLREPNDETSQLPIYEDESGTHIFASEDVSLVPYLADLYEAGLKTWK
EECCCCCCCCCCEEEECCCCCCCCCCEEECCCCCEEEECCCCCHHHHHHHHHHCCCCEEE
LDGVLAESENFVQIASLLVEAKEAVMKGQFVAEYFVNKLTELQPPTRKLDAGFYLKNPDD
ECCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCEEECCCCC
VK
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]