Click here to switch to the map view.

The map label for this gene is yvoA [H]

Identifier: 226223576

GI number: 226223576

Start: 992021

End: 992743

Strand: Direct

Name: yvoA [H]

Synonym: Lm4b_00978

Alternate gene names: 226223576

Gene position: 992021-992743 (Clockwise)

Preceding gene: 226223575

Following gene: 226223577

Centisome position: 34.06

GC content: 40.25

Gene sequence:

>723_bases
ATGATCGATAAACAATCAGGAATACCGATTTACATTCAGATTCAAAGTGAAATTAAAAAGAAAATGGAAGATGGTGTTTG
GAAAGTTGGCACTTCTATTCCAGCTGAACGTCAACTTGCTGAAATGTTTCACGTTAGCCGAATGACGGTAAGACAAGCCA
TTCAAGGCCTCGTTGATGATAACATTTTGCAAAGACGTGTTGGTGCCGGGACCTTTATTGCGGAAAAGAAACTAACCGAA
CGACTTGAAGCGGTTACGAGTTTTACGAATTTGATGTTACAAGAGGGGAAAGTTCCTTCGACGCGAATCGTATCGTATGG
CATTCGTCCGGCAAGTACGCAAGAACAAGAAGCGTTGCAACTGCCAGAAAACAGCAATGTAATGAAAATTGAACGGATTC
GTTACGGCGACCGTGTGCCAATTCTTTATGAAGTTGCTGCCATTCCAGAAAAAATTGCTTCACTGCTTACAAAGGAAGAC
ATTATGGATTCCCTTTATAAAGCGATTGAATTAAAACTTGGTCAACCAATTGGAGAAGCGGAACAAATCATGGAAGCTTC
TTTAGTATCAGAAAAAATTGCGCCATATCTTGATGTGAAACTCGGATCGCCGGTTATGAAACTCAGGCAGATTACAACAT
TAGAAGACGGTCGACCATTTGAATTTACGCGTTCCCAGTATGTAGGTAGTAGATTTCAATTTGTAGCTAGGATTAAACAA
TAA

Upstream 100 bases:

>100_bases
AGATGTGAATTGTCCTGCTTCTGTACTTCAAAATCATCCAGATGTTACTGTGATTCTTGACAACGAGGCGGCGTCACTTC
TATAAGAAGAGGGCGGGAAA

Downstream 100 bases:

>100_bases
ATAAAAGCTTGAGGCGGAATCTGTCTGCCCCAAGCTTTTTTGCATAATGATTTTCGTTGTCTTTTTGCAAATAAAAAAGT
ATAATGAGATGAGTAAAAAA

Product: transcription regulator GntR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MIDKQSGIPIYIQIQSEIKKKMEDGVWKVGTSIPAERQLAEMFHVSRMTVRQAIQGLVDDNILQRRVGAGTFIAEKKLTE
RLEAVTSFTNLMLQEGKVPSTRIVSYGIRPASTQEQEALQLPENSNVMKIERIRYGDRVPILYEVAAIPEKIASLLTKED
IMDSLYKAIELKLGQPIGEAEQIMEASLVSEKIAPYLDVKLGSPVMKLRQITTLEDGRPFEFTRSQYVGSRFQFVARIKQ

Sequences:

>Translated_240_residues
MIDKQSGIPIYIQIQSEIKKKMEDGVWKVGTSIPAERQLAEMFHVSRMTVRQAIQGLVDDNILQRRVGAGTFIAEKKLTE
RLEAVTSFTNLMLQEGKVPSTRIVSYGIRPASTQEQEALQLPENSNVMKIERIRYGDRVPILYEVAAIPEKIASLLTKED
IMDSLYKAIELKLGQPIGEAEQIMEASLVSEKIAPYLDVKLGSPVMKLRQITTLEDGRPFEFTRSQYVGSRFQFVARIKQ
>Mature_240_residues
MIDKQSGIPIYIQIQSEIKKKMEDGVWKVGTSIPAERQLAEMFHVSRMTVRQAIQGLVDDNILQRRVGAGTFIAEKKLTE
RLEAVTSFTNLMLQEGKVPSTRIVSYGIRPASTQEQEALQLPENSNVMKIERIRYGDRVPILYEVAAIPEKIASLLTKED
IMDSLYKAIELKLGQPIGEAEQIMEASLVSEKIAPYLDVKLGSPVMKLRQITTLEDGRPFEFTRSQYVGSRFQFVARIKQ

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786950, Length=227, Percent_Identity=27.7533039647577, Blast_Score=97, Evalue=8e-22,
Organism=Escherichia coli, GI87082252, Length=220, Percent_Identity=25.4545454545455, Blast_Score=94, Evalue=9e-21,
Organism=Escherichia coli, GI1790118, Length=214, Percent_Identity=24.2990654205607, Blast_Score=87, Evalue=9e-19,
Organism=Escherichia coli, GI1788418, Length=229, Percent_Identity=25.764192139738, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1790540, Length=121, Percent_Identity=33.8842975206612, Blast_Score=71, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 27159; Mature: 27159

Theoretical pI: Translated: 9.20; Mature: 9.20

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDKQSGIPIYIQIQSEIKKKMEDGVWKVGTSIPAERQLAEMFHVSRMTVRQAIQGLVDD
CCCCCCCCEEEEEEHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
NILQRRVGAGTFIAEKKLTERLEAVTSFTNLMLQEGKVPSTRIVSYGIRPASTQEQEALQ
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHEECCCCCCCCHHHHHC
LPENSNVMKIERIRYGDRVPILYEVAAIPEKIASLLTKEDIMDSLYKAIELKLGQPIGEA
CCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
EQIMEASLVSEKIAPYLDVKLGSPVMKLRQITTLEDGRPFEFTRSQYVGSRFQFVARIKQ
HHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIDKQSGIPIYIQIQSEIKKKMEDGVWKVGTSIPAERQLAEMFHVSRMTVRQAIQGLVDD
CCCCCCCCEEEEEEHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
NILQRRVGAGTFIAEKKLTERLEAVTSFTNLMLQEGKVPSTRIVSYGIRPASTQEQEALQ
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHEECCCCCCCCHHHHHC
LPENSNVMKIERIRYGDRVPILYEVAAIPEKIASLLTKEDIMDSLYKAIELKLGQPIGEA
CCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
EQIMEASLVSEKIAPYLDVKLGSPVMKLRQITTLEDGRPFEFTRSQYVGSRFQFVARIKQ
HHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]