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The map label for this gene is ybhS [C]

Identifier: 226223544

GI number: 226223544

Start: 962591

End: 963706

Strand: Direct

Name: ybhS [C]

Synonym: Lm4b_00944

Alternate gene names: 226223544

Gene position: 962591-963706 (Clockwise)

Preceding gene: 226223543

Following gene: 226223545

Centisome position: 33.05

GC content: 38.8

Gene sequence:

>1116_bases
ATGCGAATATTTGCCATTGTCAAACGCATCATTAACCAATTTCGCCGTGATAAACGGACGCTTGCCCTAATGTTTCTTGC
GCCACTTTTACTTATCACACTGCTCACTTATTTATTCGAAGGTGACACAGTGAAGCCAGTTGTTGGTGTAAGCGGGCTTT
CTGACTCCATGGTAAAAGAACTGAAAGCAAATGATTTAACCATCAAAACTTACTCGGAAAATACCGATGTAACGGCTAAA
ATTAAAGATGCCAACCTCGACGCTTTTTTTAAACAAAACGGTGAAAAACTCGAAGTCACCTATGAAAATAGTGAACCAAG
CTTGAGTAAGGAAATCGGATTAAAACTACAAAAAGCAATGATGACGGAGCAACAGGCACAAGTGAAAAAGCAAGCGAAAG
CAACCGGTGAGTCACTTGCTAAAGCTGGTATTGATCCAAACACCATTCCTTCACTTACACAAAGCCCAGAAAAGCTCAGC
ATCTCAACAAACTACGTATACGGAGATAAAGGTACTACCTTTTTCGACACAATTAGCCCGATTTTCATTGGCTTTTTCGT
ATTCTTTTTCGTATTTCTGATTGCCGGTATTTCTTTCTTGAGAGAACGAACAACAGGCACGCTTGAAAGACTTATGGCAA
CCCCAATTAAACGTATCGAACTTGAATTAGGGTATTTAATAGGTTTTGGTATTTTTGCGTTACTACAGTCTATCTTAGTC
GCAGTTTTCTCCATCCAAGTACTTGGCATGATGCAAAACGGCTCCTTATTCTATGTGTTACTTATTACATTAACACTCGG
CATGGTTTCTCTAGCGCTAGGAATTTTACTTTCTACTTTCGCAAATAATGAATTTCAAATCGTTCAATTTATTCCTATCG
TTATCGTGCCACAAGTCTTATTTTGTGGGATTTTCCCGCTCGATGGCATGGCAGATTGGCTCGTGTGGATTGCCCATATT
ATGCCGCTTTACTACGGCGCAAATGCACTAACATCCATTATGGTAAAAGGAGAAGGATTCGCTTCGTTTGCAACTGATTT
CTACATTTTACTAGGATTTGTGCTCGTATTTGTTATATTAAATATTTTTGCTTTGAAAAAATACCGCAAAGTTTAA

Upstream 100 bases:

>100_bases
ATGGGCAAATAATCGCTGTAGGGACCCCACAAGAGCTCTCAAGTAAAACGTCATCTGGTAAGCTAGAAGATGCCTTTTTA
GAGTTTGGAGGGAAGCACTA

Downstream 100 bases:

>100_bases
ATGAAACAGGAGGAGATAAGACGTGGATGCAGAAGGAGACATTATCCGTCAAATGCTTGATTTAACGGAAAAAGAAACAA
AGATGAGTGAAAAGCAGCGC

Product: membrane protein

Products: NA

Alternate protein names: ABC Transporter Permease Protein; ABC-Type Multidrug Transport System Permease Component; ABC Transporter; Multidrug ABC Transporter Inner Membrane Protein; ABC Transporter Permease; Multidrug ABC Transporter Permease; ABC Transporter Permease Component; ABC Transporter Efflux Protein DrrB Family Protein; DrrB Family ABC Transporter; Antibiotic Transport System Permease; Abc-2 Type Transporter Integral Membrane Subunit; DrrB Family ABC Transporter Efflux Protein; ABC Drug Efflux Pump Inner Membrane Subunit DrrB Family; Export ABC Transporter Permease Protein; ABC-Type Transporter Permease Component; ABC Efflux Pump Inner Membrane Subunit; ABC Transporter ATPase And Permease Components; Integral Membrane Protein; Drug Efflux ABC Transporter Inner Membrane Protein; Multidrug ABC Transporter Permease Component; ABC-Type Multidrug Transport System Protein; Multidrug Resistance ABC Transporter Permease; ABC-Type Multidrug Transport System; Antibiotic Resistance ABC Transporter Efflux Protein; ABC Transporter Subunit; Antibiotic Transport System Permease Protein

Number of amino acids: Translated: 371; Mature: 371

Protein sequence:

>371_residues
MRIFAIVKRIINQFRRDKRTLALMFLAPLLLITLLTYLFEGDTVKPVVGVSGLSDSMVKELKANDLTIKTYSENTDVTAK
IKDANLDAFFKQNGEKLEVTYENSEPSLSKEIGLKLQKAMMTEQQAQVKKQAKATGESLAKAGIDPNTIPSLTQSPEKLS
ISTNYVYGDKGTTFFDTISPIFIGFFVFFFVFLIAGISFLRERTTGTLERLMATPIKRIELELGYLIGFGIFALLQSILV
AVFSIQVLGMMQNGSLFYVLLITLTLGMVSLALGILLSTFANNEFQIVQFIPIVIVPQVLFCGIFPLDGMADWLVWIAHI
MPLYYGANALTSIMVKGEGFASFATDFYILLGFVLVFVILNIFALKKYRKV

Sequences:

>Translated_371_residues
MRIFAIVKRIINQFRRDKRTLALMFLAPLLLITLLTYLFEGDTVKPVVGVSGLSDSMVKELKANDLTIKTYSENTDVTAK
IKDANLDAFFKQNGEKLEVTYENSEPSLSKEIGLKLQKAMMTEQQAQVKKQAKATGESLAKAGIDPNTIPSLTQSPEKLS
ISTNYVYGDKGTTFFDTISPIFIGFFVFFFVFLIAGISFLRERTTGTLERLMATPIKRIELELGYLIGFGIFALLQSILV
AVFSIQVLGMMQNGSLFYVLLITLTLGMVSLALGILLSTFANNEFQIVQFIPIVIVPQVLFCGIFPLDGMADWLVWIAHI
MPLYYGANALTSIMVKGEGFASFATDFYILLGFVLVFVILNIFALKKYRKV
>Mature_371_residues
MRIFAIVKRIINQFRRDKRTLALMFLAPLLLITLLTYLFEGDTVKPVVGVSGLSDSMVKELKANDLTIKTYSENTDVTAK
IKDANLDAFFKQNGEKLEVTYENSEPSLSKEIGLKLQKAMMTEQQAQVKKQAKATGESLAKAGIDPNTIPSLTQSPEKLS
ISTNYVYGDKGTTFFDTISPIFIGFFVFFFVFLIAGISFLRERTTGTLERLMATPIKRIELELGYLIGFGIFALLQSILV
AVFSIQVLGMMQNGSLFYVLLITLTLGMVSLALGILLSTFANNEFQIVQFIPIVIVPQVLFCGIFPLDGMADWLVWIAHI
MPLYYGANALTSIMVKGEGFASFATDFYILLGFVLVFVILNIFALKKYRKV

Specific function: Unknown

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787011, Length=360, Percent_Identity=23.8888888888889, Blast_Score=66, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24650853, Length=209, Percent_Identity=29.1866028708134, Blast_Score=92, Evalue=7e-19,
Organism=Drosophila melanogaster, GI24650855, Length=209, Percent_Identity=29.1866028708134, Blast_Score=91, Evalue=9e-19,
Organism=Drosophila melanogaster, GI85725262, Length=236, Percent_Identity=24.5762711864407, Blast_Score=66, Evalue=4e-11,
Organism=Drosophila melanogaster, GI85725260, Length=236, Percent_Identity=24.5762711864407, Blast_Score=65, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 41362; Mature: 41362

Theoretical pI: Translated: 9.31; Mature: 9.31

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIFAIVKRIINQFRRDKRTLALMFLAPLLLITLLTYLFEGDTVKPVVGVSGLSDSMVKE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
LKANDLTIKTYSENTDVTAKIKDANLDAFFKQNGEKLEVTYENSEPSLSKEIGLKLQKAM
HCCCCCEEEEECCCCCEEEEEECCCCHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHH
MTEQQAQVKKQAKATGESLAKAGIDPNTIPSLTQSPEKLSISTNYVYGDKGTTFFDTISP
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCHHHHHHH
IFIGFFVFFFVFLIAGISFLRERTTGTLERLMATPIKRIELELGYLIGFGIFALLQSILV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
AVFSIQVLGMMQNGSLFYVLLITLTLGMVSLALGILLSTFANNEFQIVQFIPIVIVPQVL
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHH
FCGIFPLDGMADWLVWIAHIMPLYYGANALTSIMVKGEGFASFATDFYILLGFVLVFVIL
HHCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
NIFALKKYRKV
HHHHHHHHHCC
>Mature Secondary Structure
MRIFAIVKRIINQFRRDKRTLALMFLAPLLLITLLTYLFEGDTVKPVVGVSGLSDSMVKE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
LKANDLTIKTYSENTDVTAKIKDANLDAFFKQNGEKLEVTYENSEPSLSKEIGLKLQKAM
HCCCCCEEEEECCCCCEEEEEECCCCHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHH
MTEQQAQVKKQAKATGESLAKAGIDPNTIPSLTQSPEKLSISTNYVYGDKGTTFFDTISP
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCHHHHHHH
IFIGFFVFFFVFLIAGISFLRERTTGTLERLMATPIKRIELELGYLIGFGIFALLQSILV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
AVFSIQVLGMMQNGSLFYVLLITLTLGMVSLALGILLSTFANNEFQIVQFIPIVIVPQVL
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHH
FCGIFPLDGMADWLVWIAHIMPLYYGANALTSIMVKGEGFASFATDFYILLGFVLVFVIL
HHCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
NIFALKKYRKV
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA