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The map label for this gene is ybiA [H]

Identifier: 226223519

GI number: 226223519

Start: 937325

End: 937753

Strand: Direct

Name: ybiA [H]

Synonym: Lm4b_00918

Alternate gene names: 226223519

Gene position: 937325-937753 (Clockwise)

Preceding gene: 226223518

Following gene: 226223520

Centisome position: 32.18

GC content: 36.6

Gene sequence:

>429_bases
ATGAAGGTTATCCATTTTTATAGTGAAAATGCGGACTATGGCTGTTTCTCTAATTTCTCTTTACATCCAATTGTCATAGA
CGGCGTGACTTACCCAACCACAGAACACTATTTCCAAGCACAAAAATTTATAGATAAAAAAATTATTAAAAAAGTAATTA
ATACGAAAAAACCAATAGATGCAGCAAAATTGGGTAGAAATAGAGACTTCCCACTGCGAAAAGGCTGGGAAAGTATGAAA
GACGAAGTGATGTTAAAAGCAATCAGAGCAAAAGTAGCGCAACATTCGGAAGTGAAAGAAATGCTTTTATCCACAGAGAA
TGCTATTTTAGTGGAACATACGGAAAATGATCATTATTGGGGCGACGGCGGAGACGGCTCTGGAAAAAATCGTCTAGGCA
AGATTTTAATGAAAGTCAGAGACGAATGA

Upstream 100 bases:

>100_bases
GAAAAATAGCGATAGATTTGCGTCTATATGTATGCTAAAGTTATTTTGAAAGATAAGCTCAAGTTGCAAATAACATAACG
TAAATACTCGGAGGTGCAAA

Downstream 100 bases:

>100_bases
ACTCTAAATAGTGGGAGGTAGCTTAAATGGAAACAATAAATCATTTTTTTGAATGGGCTAAAAATAATAATTGGCAAGTA
GATTTGTCTGCTGTAGAGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 142

Protein sequence:

>142_residues
MKVIHFYSENADYGCFSNFSLHPIVIDGVTYPTTEHYFQAQKFIDKKIIKKVINTKKPIDAAKLGRNRDFPLRKGWESMK
DEVMLKAIRAKVAQHSEVKEMLLSTENAILVEHTENDHYWGDGGDGSGKNRLGKILMKVRDE

Sequences:

>Translated_142_residues
MKVIHFYSENADYGCFSNFSLHPIVIDGVTYPTTEHYFQAQKFIDKKIIKKVINTKKPIDAAKLGRNRDFPLRKGWESMK
DEVMLKAIRAKVAQHSEVKEMLLSTENAILVEHTENDHYWGDGGDGSGKNRLGKILMKVRDE
>Mature_142_residues
MKVIHFYSENADYGCFSNFSLHPIVIDGVTYPTTEHYFQAQKFIDKKIIKKVINTKKPIDAAKLGRNRDFPLRKGWESMK
DEVMLKAIRAKVAQHSEVKEMLLSTENAILVEHTENDHYWGDGGDGSGKNRLGKILMKVRDE

Specific function: Required for swarming motility [H]

COG id: COG3236

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ybiA family [H]

Homologues:

Organism=Escherichia coli, GI1787017, Length=140, Percent_Identity=57.8571428571429, Blast_Score=182, Evalue=7e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012816 [H]

Pfam domain/function: PF08719 DUF1768 [H]

EC number: NA

Molecular weight: Translated: 16312; Mature: 16312

Theoretical pI: Translated: 9.33; Mature: 9.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVIHFYSENADYGCFSNFSLHPIVIDGVTYPTTEHYFQAQKFIDKKIIKKVINTKKPID
CEEEEEECCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
AAKLGRNRDFPLRKGWESMKDEVMLKAIRAKVAQHSEVKEMLLSTENAILVEHTENDHYW
HHHCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC
GDGGDGSGKNRLGKILMKVRDE
CCCCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MKVIHFYSENADYGCFSNFSLHPIVIDGVTYPTTEHYFQAQKFIDKKIIKKVINTKKPID
CEEEEEECCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
AAKLGRNRDFPLRKGWESMKDEVMLKAIRAKVAQHSEVKEMLLSTENAILVEHTENDHYW
HHHCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC
GDGGDGSGKNRLGKILMKVRDE
CCCCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8037924; 8905232; 9278503 [H]