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The map label for this gene is ydcI [H]

Identifier: 226223517

GI number: 226223517

Start: 934312

End: 936489

Strand: Direct

Name: ydcI [H]

Synonym: Lm4b_00916

Alternate gene names: 226223517

Gene position: 934312-936489 (Clockwise)

Preceding gene: 226223516

Following gene: 226223518

Centisome position: 32.08

GC content: 40.17

Gene sequence:

>2178_bases
ATGGAACAAATGCAAGATAAAATAATAAAACTAGTCCAAAAATCGCTAACGTATAAACCAGCGCAAATCAATGCCGTTAT
CAAATTAATGGAAGAAGGCAACACAGTTCCATTTATCGCGCGGTACCGTAAAGAAATGACTGGTAGCTTAGATGAAGTAG
AAATCCGTGATATCGAAGAAACCTTTGAATATGTAACAAAATTAGAAAATCGTAAAGAAGAAATTATTCGCCTAATAGAT
GAACAAGGAAAATTAACAGACGAACTGAGAGCGGCAATTACCAAAGCGGAAAAACATCAAGCGCTCGAAGATTTATACCG
TCCTTACAAACAAAAGAAACGCACAAAAGCAACGATTGCGAAAGAAAAAGGATTAGAGCCGCTTGCTGATTGGCTAATGA
GCTTCCCAAGTAACGCGGACCCACTGAAAGAAGCTGCAAACTATATTTCAGAAGAAAAAGAAGTGGAGTCAGCAGAAGCT
GCTTTACTCGGCGCACATGAAATCATCGCGGAACAAATCAGTGATGAGCCTAGTTTCCGTGAGTGGATTCGTAACTTTAC
GCGCAAATTTGGGATGATTGAATCCAGAGCGAAAAACGCCGAAGCAGACGAAAAAGGCGTTTACGAAATGTATTATGAAT
TTAACGAAATGATTGGCAAAGTAGCAAGTCACCGCATCCTTGCATTTAACCGCGGAGAGAAAGAAGACATTTTACGTGTA
CAAGTCCAAGTAGATACGACAAAAATTTTCCAATATTTATTTGAAAAAGTTATCCAAAACCGTAATTCTGCAACACGACC
ATACGTAGAAGAAGCTATAATGGATGCTTATAAACGCTTTATCGGACCGGCAATTGAACGTGAAATTCGCGGTGAACTAA
CAGAAAAAGGCGAAGAACAAGCCATCCATATTTTCTCCGAGAACTTGCGCAAACTACTTTTACAACCACCTTTAAAAGGA
AAAATCATTCTTGGGGTCGATCCGGCTTTTAGAACAGGTTGTAAATTCTCTGTATTAGATCAAACGGGGAAAGTACTAGA
AATTGGCGTTGTTTATCCACATACAGCAAAAGCACGCCGTCCGGAAGCCAAACAAAAAATTGCGGAGATTTTATCCACAT
ACAAAGTGGAAGTTATCGCAATTGGTAACGGAACAGCCTCACGTGAAACAGAGCAATTTATTGTGGAAGTGATTCGTGAA
TCGAAATCGAACGCTTATTATTGTATCGTCAATGAAGCTGGTGCGAGTGTTTATTCAGCGAGTGAAACTGCCCGCGAAGA
ATTCCCAGACTATCAAGTAGAAGAGCGTAGCGCTGTTTCGATTGGTCGTCGTTTGCAAGATCCGCTAGCTGAACTTGTGA
AAATCGATCCAAAATCTGTAGGCGTAGGGCAATATCAACATGACGTAGCGCAAAAACGTTTAAATGAAACACTAACTTTC
GTCGTTGAAACGGCCGTTAACCAAGTGGGCGTAAACGTTAATACGGCCTCGGCTTCTCTGTTACAATATGTTGCTGGCTT
AAACAAGACAGTCGCAAATAATATCCGTAAATATCGCGAAGAAAACGGCTCGTTCGCTTCTCGCAAAGAGTTGAAAAAAG
TACCTCGTCTTGGAGCAAAATCGTATGAACAAAGTATCGGTTTCTTACGTATTTTGGAGGGTGAAAATCCACTTGATAAA
ACCGCCATTCACCCGGAAAGTTATAAGGCAGCTGAACAAATTGTAAAAGCAGCTGGTTTCGGATTGAAAGATATTGGTAG
CGAAGATTTAAAAGCCGCACTTCAAGCGCTTAGTATCCCAGAAGAAGCAGAGAAATTAAGCATCGGTAAAGAAACCATGC
GCGATATCATTGATAATTTAATTGCTCCTGGTCGCGACCTTCGTGACGAACTTCCAGCACCACTTTTAAAACAAGATGTT
ATTTCGATGGAAGATTTAAAACAAGGCATGGAATTACAAGGAACCGTTCGGAACGTAGTTGACTTTGGAGCATTTGTTGA
TATTGGCGTGAAACAAGACGGCCTTGTGCATATTTCGAAACTAAGCAATTCTTTTGTTAAAAACCCGATGGATGTCGTTT
CAGTAGGAGACGTTGTAACTGTTTGGGTAGATGAAGTAGATACAAAGAAAAACCGTATTGCTTTAACTATGCTTAATCCT
AATGGAAGTGTTAAATAA

Upstream 100 bases:

>100_bases
GCGGAAAATGCTTTAAATAAGGGAGACTGATAGCTTTTGTCAGTTGAAACGTAATTATGTTACACTTAGTAGATAATGAA
ATAATTGGAGGCTATCAAGT

Downstream 100 bases:

>100_bases
TGAATCAAGCAGAATTGCAGCGACACATGGAAGAAGTGTCGCTGCAATTTTTCCAAAAAGAATTTCGTCACCAAGCCGTG
TTTAATGCGCGCTTACGAAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 725; Mature: 725

Protein sequence:

>725_residues
MEQMQDKIIKLVQKSLTYKPAQINAVIKLMEEGNTVPFIARYRKEMTGSLDEVEIRDIEETFEYVTKLENRKEEIIRLID
EQGKLTDELRAAITKAEKHQALEDLYRPYKQKKRTKATIAKEKGLEPLADWLMSFPSNADPLKEAANYISEEKEVESAEA
ALLGAHEIIAEQISDEPSFREWIRNFTRKFGMIESRAKNAEADEKGVYEMYYEFNEMIGKVASHRILAFNRGEKEDILRV
QVQVDTTKIFQYLFEKVIQNRNSATRPYVEEAIMDAYKRFIGPAIEREIRGELTEKGEEQAIHIFSENLRKLLLQPPLKG
KIILGVDPAFRTGCKFSVLDQTGKVLEIGVVYPHTAKARRPEAKQKIAEILSTYKVEVIAIGNGTASRETEQFIVEVIRE
SKSNAYYCIVNEAGASVYSASETAREEFPDYQVEERSAVSIGRRLQDPLAELVKIDPKSVGVGQYQHDVAQKRLNETLTF
VVETAVNQVGVNVNTASASLLQYVAGLNKTVANNIRKYREENGSFASRKELKKVPRLGAKSYEQSIGFLRILEGENPLDK
TAIHPESYKAAEQIVKAAGFGLKDIGSEDLKAALQALSIPEEAEKLSIGKETMRDIIDNLIAPGRDLRDELPAPLLKQDV
ISMEDLKQGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLSNSFVKNPMDVVSVGDVVTVWVDEVDTKKNRIALTMLNP
NGSVK

Sequences:

>Translated_725_residues
MEQMQDKIIKLVQKSLTYKPAQINAVIKLMEEGNTVPFIARYRKEMTGSLDEVEIRDIEETFEYVTKLENRKEEIIRLID
EQGKLTDELRAAITKAEKHQALEDLYRPYKQKKRTKATIAKEKGLEPLADWLMSFPSNADPLKEAANYISEEKEVESAEA
ALLGAHEIIAEQISDEPSFREWIRNFTRKFGMIESRAKNAEADEKGVYEMYYEFNEMIGKVASHRILAFNRGEKEDILRV
QVQVDTTKIFQYLFEKVIQNRNSATRPYVEEAIMDAYKRFIGPAIEREIRGELTEKGEEQAIHIFSENLRKLLLQPPLKG
KIILGVDPAFRTGCKFSVLDQTGKVLEIGVVYPHTAKARRPEAKQKIAEILSTYKVEVIAIGNGTASRETEQFIVEVIRE
SKSNAYYCIVNEAGASVYSASETAREEFPDYQVEERSAVSIGRRLQDPLAELVKIDPKSVGVGQYQHDVAQKRLNETLTF
VVETAVNQVGVNVNTASASLLQYVAGLNKTVANNIRKYREENGSFASRKELKKVPRLGAKSYEQSIGFLRILEGENPLDK
TAIHPESYKAAEQIVKAAGFGLKDIGSEDLKAALQALSIPEEAEKLSIGKETMRDIIDNLIAPGRDLRDELPAPLLKQDV
ISMEDLKQGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLSNSFVKNPMDVVSVGDVVTVWVDEVDTKKNRIALTMLNP
NGSVK
>Mature_725_residues
MEQMQDKIIKLVQKSLTYKPAQINAVIKLMEEGNTVPFIARYRKEMTGSLDEVEIRDIEETFEYVTKLENRKEEIIRLID
EQGKLTDELRAAITKAEKHQALEDLYRPYKQKKRTKATIAKEKGLEPLADWLMSFPSNADPLKEAANYISEEKEVESAEA
ALLGAHEIIAEQISDEPSFREWIRNFTRKFGMIESRAKNAEADEKGVYEMYYEFNEMIGKVASHRILAFNRGEKEDILRV
QVQVDTTKIFQYLFEKVIQNRNSATRPYVEEAIMDAYKRFIGPAIEREIRGELTEKGEEQAIHIFSENLRKLLLQPPLKG
KIILGVDPAFRTGCKFSVLDQTGKVLEIGVVYPHTAKARRPEAKQKIAEILSTYKVEVIAIGNGTASRETEQFIVEVIRE
SKSNAYYCIVNEAGASVYSASETAREEFPDYQVEERSAVSIGRRLQDPLAELVKIDPKSVGVGQYQHDVAQKRLNETLTF
VVETAVNQVGVNVNTASASLLQYVAGLNKTVANNIRKYREENGSFASRKELKKVPRLGAKSYEQSIGFLRILEGENPLDK
TAIHPESYKAAEQIVKAAGFGLKDIGSEDLKAALQALSIPEEAEKLSIGKETMRDIIDNLIAPGRDLRDELPAPLLKQDV
ISMEDLKQGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLSNSFVKNPMDVVSVGDVVTVWVDEVDTKKNRIALTMLNP
NGSVK

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=792, Percent_Identity=34.3434343434343, Blast_Score=430, Evalue=1e-120,
Organism=Homo sapiens, GI27597090, Length=548, Percent_Identity=25.5474452554745, Blast_Score=100, Evalue=7e-21,
Organism=Escherichia coli, GI87082262, Length=725, Percent_Identity=44.9655172413793, Blast_Score=590, Evalue=1e-169,
Organism=Escherichia coli, GI1787140, Length=75, Percent_Identity=44, Blast_Score=72, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17511129, Length=728, Percent_Identity=29.9450549450549, Blast_Score=279, Evalue=4e-75,
Organism=Caenorhabditis elegans, GI17552892, Length=292, Percent_Identity=27.7397260273973, Blast_Score=77, Evalue=4e-14,
Organism=Drosophila melanogaster, GI62484314, Length=759, Percent_Identity=35.5731225296443, Blast_Score=427, Evalue=1e-119,
Organism=Drosophila melanogaster, GI24640080, Length=512, Percent_Identity=21.6796875, Blast_Score=75, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 81597; Mature: 81597

Theoretical pI: Translated: 5.43; Mature: 5.43

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQMQDKIIKLVQKSLTYKPAQINAVIKLMEEGNTVPFIARYRKEMTGSLDEVEIRDIEE
CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHH
TFEYVTKLENRKEEIIRLIDEQGKLTDELRAAITKAEKHQALEDLYRPYKQKKRTKATIA
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KEKGLEPLADWLMSFPSNADPLKEAANYISEEKEVESAEAALLGAHEIIAEQISDEPSFR
HHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
EWIRNFTRKFGMIESRAKNAEADEKGVYEMYYEFNEMIGKVASHRILAFNRGEKEDILRV
HHHHHHHHHHCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCEEEE
QVQVDTTKIFQYLFEKVIQNRNSATRPYVEEAIMDAYKRFIGPAIEREIRGELTEKGEEQ
EEEECHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCHHH
AIHIFSENLRKLLLQPPLKGKIILGVDPAFRTGCKFSVLDQTGKVLEIGVVYPHTAKARR
HHHHHHHHHHHHHHCCCCCCEEEEECCHHHHCCCCEEECCCCCCEEEEEEECCCCCCCCC
PEAKQKIAEILSTYKVEVIAIGNGTASRETEQFIVEVIRESKSNAYYCIVNEAGASVYSA
CHHHHHHHHHHHHHEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHH
SETAREEFPDYQVEERSAVSIGRRLQDPLAELVKIDPKSVGVGQYQHDVAQKRLNETLTF
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
VVETAVNQVGVNVNTASASLLQYVAGLNKTVANNIRKYREENGSFASRKELKKVPRLGAK
HHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHH
SYEQSIGFLRILEGENPLDKTAIHPESYKAAEQIVKAAGFGLKDIGSEDLKAALQALSIP
HHHHCCCEEEEECCCCCCHHCCCCCHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHCCC
EEAEKLSIGKETMRDIIDNLIAPGRDLRDELPAPLLKQDVISMEDLKQGMELQGTVRNVV
HHHHHHHCCHHHHHHHHHHHCCCCCCHHHHCCCCHHHHHHCCHHHHHCCCHHHHHHHHHH
DFGAFVDIGVKQDGLVHISKLSNSFVKNPMDVVSVGDVVTVWVDEVDTKKNRIALTMLNP
HHHHHEECCCCCCCCEEHHHHHHHHHCCCHHHHHHCCEEEEEHHCCCCCCCEEEEEEECC
NGSVK
CCCCC
>Mature Secondary Structure
MEQMQDKIIKLVQKSLTYKPAQINAVIKLMEEGNTVPFIARYRKEMTGSLDEVEIRDIEE
CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHH
TFEYVTKLENRKEEIIRLIDEQGKLTDELRAAITKAEKHQALEDLYRPYKQKKRTKATIA
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KEKGLEPLADWLMSFPSNADPLKEAANYISEEKEVESAEAALLGAHEIIAEQISDEPSFR
HHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
EWIRNFTRKFGMIESRAKNAEADEKGVYEMYYEFNEMIGKVASHRILAFNRGEKEDILRV
HHHHHHHHHHCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCEEEE
QVQVDTTKIFQYLFEKVIQNRNSATRPYVEEAIMDAYKRFIGPAIEREIRGELTEKGEEQ
EEEECHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCHHH
AIHIFSENLRKLLLQPPLKGKIILGVDPAFRTGCKFSVLDQTGKVLEIGVVYPHTAKARR
HHHHHHHHHHHHHHCCCCCCEEEEECCHHHHCCCCEEECCCCCCEEEEEEECCCCCCCCC
PEAKQKIAEILSTYKVEVIAIGNGTASRETEQFIVEVIRESKSNAYYCIVNEAGASVYSA
CHHHHHHHHHHHHHEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHH
SETAREEFPDYQVEERSAVSIGRRLQDPLAELVKIDPKSVGVGQYQHDVAQKRLNETLTF
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
VVETAVNQVGVNVNTASASLLQYVAGLNKTVANNIRKYREENGSFASRKELKKVPRLGAK
HHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHH
SYEQSIGFLRILEGENPLDKTAIHPESYKAAEQIVKAAGFGLKDIGSEDLKAALQALSIP
HHHHCCCEEEEECCCCCCHHCCCCCHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHCCC
EEAEKLSIGKETMRDIIDNLIAPGRDLRDELPAPLLKQDVISMEDLKQGMELQGTVRNVV
HHHHHHHCCHHHHHHHHHHHCCCCCCHHHHCCCCHHHHHHCCHHHHHCCCHHHHHHHHHH
DFGAFVDIGVKQDGLVHISKLSNSFVKNPMDVVSVGDVVTVWVDEVDTKKNRIALTMLNP
HHHHHEECCCCCCCCEEHHHHHHHHHCCCHHHHHHCCEEEEEHHCCCCCCCEEEEEEECC
NGSVK
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]