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The map label for this gene is ytbD [H]

Identifier: 226223491

GI number: 226223491

Start: 911352

End: 912518

Strand: Direct

Name: ytbD [H]

Synonym: Lm4b_00890

Alternate gene names: 226223491

Gene position: 911352-912518 (Clockwise)

Preceding gene: 226223489

Following gene: 226223492

Centisome position: 31.29

GC content: 40.96

Gene sequence:

>1167_bases
GTGGATATGAAAAAAGTAAATCCTAATTTGACACTTTTGGCGCTAGCGATTAGTGCGTTTGGGATTGGTTCAACAGAATT
TATTAGTGTGGGACTGCTTCCGCTGATTTCTTCTAGTATGGGTGTGTCGATTAGTACGGCTGGTTTAACTGTATCGATTT
ATGCGCTTGGTGTGATGGTTGGAGCGCCGGTTTTAACAACTATGACGGCGAAGATGAATCGTAAAAATTTGTTATTATTA
GTCATGCTCGTGTTTCTGATAGGGAATCTTGTCTCGGCATTTGCTGTGAGTTTTGGAATGCTCCTTACTGGGCGTGTTGT
TGCGGCGTTTGCGCATGGGGTGTTTATGTCGATTGCTTCTGTTATCGCTGCCGATGTGGTTCATCCGAGCAAACGAGCTA
GTGCGATTGCGGTGATGTTTACAGGGTTGACGGTGGCGACTGTGACAGGGGTGCCGCTTGGGACGTTTATCGGGCAACTA
TTTGGTTGGCGGATGTCATTCCTGTTTATTGTTGCGATTGGCGTGATTGCGATTATTGCTAATTTTTTCCTCGTTCCGAA
AAACTTATCCAATGGAAAAAGTATTTCATTTAAAGCGATTGGACAATTATTAGTTAATAAAAAAATCGTGATGGTGTTAC
TCATGACAGCGTTTGGCTATGGTGGTACTTTTGTGGTTTATACGTATTTGTCGCCGATGTTTAGCGGAATGGGCTATTCT
ACAAGCATGATTGTTATTTTACTTATTGTGTATGGTGTGATGGTTGCGATTGGGAATACGATTGGTGGGCATTTTTCGAA
TGAGCGCCCGGCTAAGGCACTGTTCGTGATGTTTAGTTTGCAAGGGATTACGTTATTATTACTTCAATTTACATCGACCA
ACGCGATTTTTGGATTAATGACTATTATGTTGATGGGATTTTTTGCCTTTATGAATGTGTCTGGTTTGCAGTTATATGTC
GTGCAATTGGCAGAGCGGTATTTGCCAAAAACGGTGAGCATGGCTTCGGCGCTTAATATTTCAGCTTTTAATGTTGGGAT
AGCAGTAGGTGCATTTATTGGCGGATTAGTTACGGAATATATTGGTTTGGGTTATACCCCGATTGTTGGATTTTTAATGG
TTTTCATCGCAATTATTTTAACTTTCTATATGAAAAAAGATAAATAG

Upstream 100 bases:

>100_bases
TATCTATATGACTTTTAAGTACCTTCTTGTTATTCTGTACGGTATATAAGATACTGTATAACAGAACGAAACAATTTGCA
ATTTTTTAGGGGGGAACGAT

Downstream 100 bases:

>100_bases
TTCAAATAATAGGCCTTTTACAGTGAATGTAGAAGGCTTTTTTTGTGCTTTCAGTAGCTCCGACCTATTCCGGCAAGGTT
TTTTTCCAGTTATAGTAAAA

Product: antibiotic resistance protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 388; Mature: 388

Protein sequence:

>388_residues
MDMKKVNPNLTLLALAISAFGIGSTEFISVGLLPLISSSMGVSISTAGLTVSIYALGVMVGAPVLTTMTAKMNRKNLLLL
VMLVFLIGNLVSAFAVSFGMLLTGRVVAAFAHGVFMSIASVIAADVVHPSKRASAIAVMFTGLTVATVTGVPLGTFIGQL
FGWRMSFLFIVAIGVIAIIANFFLVPKNLSNGKSISFKAIGQLLVNKKIVMVLLMTAFGYGGTFVVYTYLSPMFSGMGYS
TSMIVILLIVYGVMVAIGNTIGGHFSNERPAKALFVMFSLQGITLLLLQFTSTNAIFGLMTIMLMGFFAFMNVSGLQLYV
VQLAERYLPKTVSMASALNISAFNVGIAVGAFIGGLVTEYIGLGYTPIVGFLMVFIAIILTFYMKKDK

Sequences:

>Translated_388_residues
MDMKKVNPNLTLLALAISAFGIGSTEFISVGLLPLISSSMGVSISTAGLTVSIYALGVMVGAPVLTTMTAKMNRKNLLLL
VMLVFLIGNLVSAFAVSFGMLLTGRVVAAFAHGVFMSIASVIAADVVHPSKRASAIAVMFTGLTVATVTGVPLGTFIGQL
FGWRMSFLFIVAIGVIAIIANFFLVPKNLSNGKSISFKAIGQLLVNKKIVMVLLMTAFGYGGTFVVYTYLSPMFSGMGYS
TSMIVILLIVYGVMVAIGNTIGGHFSNERPAKALFVMFSLQGITLLLLQFTSTNAIFGLMTIMLMGFFAFMNVSGLQLYV
VQLAERYLPKTVSMASALNISAFNVGIAVGAFIGGLVTEYIGLGYTPIVGFLMVFIAIILTFYMKKDK
>Mature_388_residues
MDMKKVNPNLTLLALAISAFGIGSTEFISVGLLPLISSSMGVSISTAGLTVSIYALGVMVGAPVLTTMTAKMNRKNLLLL
VMLVFLIGNLVSAFAVSFGMLLTGRVVAAFAHGVFMSIASVIAADVVHPSKRASAIAVMFTGLTVATVTGVPLGTFIGQL
FGWRMSFLFIVAIGVIAIIANFFLVPKNLSNGKSISFKAIGQLLVNKKIVMVLLMTAFGYGGTFVVYTYLSPMFSGMGYS
TSMIVILLIVYGVMVAIGNTIGGHFSNERPAKALFVMFSLQGITLLLLQFTSTNAIFGLMTIMLMGFFAFMNVSGLQLYV
VQLAERYLPKTVSMASALNISAFNVGIAVGAFIGGLVTEYIGLGYTPIVGFLMVFIAIILTFYMKKDK

Specific function: Unknown

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787947, Length=389, Percent_Identity=37.5321336760925, Blast_Score=217, Evalue=1e-57,
Organism=Escherichia coli, GI1786595, Length=374, Percent_Identity=31.283422459893, Blast_Score=159, Evalue=2e-40,
Organism=Escherichia coli, GI1787808, Length=374, Percent_Identity=30.2139037433155, Blast_Score=126, Evalue=3e-30,
Organism=Escherichia coli, GI145693198, Length=371, Percent_Identity=25.6064690026954, Blast_Score=105, Evalue=6e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 41220; Mature: 41220

Theoretical pI: Translated: 10.51; Mature: 10.51

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
6.4 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
6.4 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDMKKVNPNLTLLALAISAFGIGSTEFISVGLLPLISSSMGVSISTAGLTVSIYALGVMV
CCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHH
GAPVLTTMTAKMNRKNLLLLVMLVFLIGNLVSAFAVSFGMLLTGRVVAAFAHGVFMSIAS
CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VIAADVVHPSKRASAIAVMFTGLTVATVTGVPLGTFIGQLFGWRMSFLFIVAIGVIAIIA
HHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NFFLVPKNLSNGKSISFKAIGQLLVNKKIVMVLLMTAFGYGGTFVVYTYLSPMFSGMGYS
HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCH
TSMIVILLIVYGVMVAIGNTIGGHFSNERPAKALFVMFSLQGITLLLLQFTSTNAIFGLM
HHHHHHHHHHHHHHHHHCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
TIMLMGFFAFMNVSGLQLYVVQLAERYLPKTVSMASALNISAFNVGIAVGAFIGGLVTEY
HHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
IGLGYTPIVGFLMVFIAIILTFYMKKDK
HCCCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDMKKVNPNLTLLALAISAFGIGSTEFISVGLLPLISSSMGVSISTAGLTVSIYALGVMV
CCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHH
GAPVLTTMTAKMNRKNLLLLVMLVFLIGNLVSAFAVSFGMLLTGRVVAAFAHGVFMSIAS
CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VIAADVVHPSKRASAIAVMFTGLTVATVTGVPLGTFIGQLFGWRMSFLFIVAIGVIAIIA
HHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NFFLVPKNLSNGKSISFKAIGQLLVNKKIVMVLLMTAFGYGGTFVVYTYLSPMFSGMGYS
HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCH
TSMIVILLIVYGVMVAIGNTIGGHFSNERPAKALFVMFSLQGITLLLLQFTSTNAIFGLM
HHHHHHHHHHHHHHHHHCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
TIMLMGFFAFMNVSGLQLYVVQLAERYLPKTVSMASALNISAFNVGIAVGAFIGGLVTEY
HHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
IGLGYTPIVGFLMVFIAIILTFYMKKDK
HCCCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]