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The map label for this gene is yobD [C]

Identifier: 226223397

GI number: 226223397

Start: 803576

End: 804043

Strand: Reverse

Name: yobD [C]

Synonym: Lm4b_00795

Alternate gene names: 226223397

Gene position: 804043-803576 (Counterclockwise)

Preceding gene: 226223398

Following gene: 226223394

Centisome position: 27.6

GC content: 38.89

Gene sequence:

>468_bases
ATGGTTTGGGATGCTACTAATATCTTTTTGTTTGCGGCAAACATCTTGACGGTACTGTATATTTTGTATAATGATGCAGT
AATTCCACTTTGGAAAGGGAAGACGGTTTTAAGTGTCAAATTGCGTTCTCGTGGACGCTGGGACGGTTATATTTTTGTTG
GAATTATCGTTCTGTTATTCGTTTCCAATACGTTCTTTCGTGAAGGACCATTTTCCACTTCTGTTCTGCTTGGGATTATG
GGTGTGTTATTCATCTATATCTGCTTCTTTCGCAGTTCGAAAGCTGTTTTCAAAGAATCCGGACTTTTTTACGCCCTGTT
ATTCTTCCCTTATGCAAAAATCGAACGGATGAATTTATCTGAGGATGGTGTGCTCGTGATTGAAACCAATCGCCAGCGTT
TGATGCTCTTTGCAAGATCCGAGAAAGATTTAGAAAAAATGCTCGCTGTATTTACTACATATAGCTAA

Upstream 100 bases:

>100_bases
CTAAATGATTATCCTCAAACCCAGTTCCCCCTCTTCCCCGCATAATTATGTTACAATATTACTAAACTATATCAATGATA
GATTGTGAGTGATAGCTAAA

Downstream 100 bases:

>100_bases
AAAACGCCACGCTTACTTCCCTGTTTTTAGGGAAATGAAGCATGGCGTTTTTTTATGTTCACTCTACTTAAATTTAGAAT
CAATGATTTTTCTTAAAAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 155

Protein sequence:

>155_residues
MVWDATNIFLFAANILTVLYILYNDAVIPLWKGKTVLSVKLRSRGRWDGYIFVGIIVLLFVSNTFFREGPFSTSVLLGIM
GVLFIYICFFRSSKAVFKESGLFYALLFFPYAKIERMNLSEDGVLVIETNRQRLMLFARSEKDLEKMLAVFTTYS

Sequences:

>Translated_155_residues
MVWDATNIFLFAANILTVLYILYNDAVIPLWKGKTVLSVKLRSRGRWDGYIFVGIIVLLFVSNTFFREGPFSTSVLLGIM
GVLFIYICFFRSSKAVFKESGLFYALLFFPYAKIERMNLSEDGVLVIETNRQRLMLFARSEKDLEKMLAVFTTYS
>Mature_155_residues
MVWDATNIFLFAANILTVLYILYNDAVIPLWKGKTVLSVKLRSRGRWDGYIFVGIIVLLFVSNTFFREGPFSTSVLLGIM
GVLFIYICFFRSSKAVFKESGLFYALLFFPYAKIERMNLSEDGVLVIETNRQRLMLFARSEKDLEKMLAVFTTYS

Specific function: Unknown

COG id: COG4811

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0266 family

Homologues:

Organism=Escherichia coli, GI1788123, Length=140, Percent_Identity=38.5714285714286, Blast_Score=97, Evalue=3e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1856_LISMH (B8DGI9)

Other databases:

- EMBL:   CP001175
- RefSeq:   YP_002350811.1
- GeneID:   7079943
- GenomeReviews:   CP001175_GR
- KEGG:   lmh:LMHCC_1856
- HOGENOM:   HBG391110
- OMA:   RVRNIDN
- ProtClustDB:   PRK02913
- HAMAP:   MF_01071
- InterPro:   IPR009328
- PIRSF:   PIRSF020687
- ProDom:   PD091196

Pfam domain/function: PF06173 DUF986

EC number: NA

Molecular weight: Translated: 17889; Mature: 17889

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x1df66db4)-; HASH(0x1e5433b4)-; HASH(0x1e651f24)-;

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVWDATNIFLFAANILTVLYILYNDAVIPLWKGKTVLSVKLRSRGRWDGYIFVGIIVLLF
CCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEEEECCCCCCCCCHHHHHHHHHH
VSNTFFREGPFSTSVLLGIMGVLFIYICFFRSSKAVFKESGLFYALLFFPYAKIERMNLS
HCCCHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCEEEHHHCCHHHHEECCCC
EDGVLVIETNRQRLMLFARSEKDLEKMLAVFTTYS
CCCEEEEECCCCEEEEEECCHHHHHHHHHHHHCCH
>Mature Secondary Structure
MVWDATNIFLFAANILTVLYILYNDAVIPLWKGKTVLSVKLRSRGRWDGYIFVGIIVLLF
CCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEEEECCCCCCCCCHHHHHHHHHH
VSNTFFREGPFSTSVLLGIMGVLFIYICFFRSSKAVFKESGLFYALLFFPYAKIERMNLS
HCCCHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCEEEHHHCCHHHHEECCCC
EDGVLVIETNRQRLMLFARSEKDLEKMLAVFTTYS
CCCEEEEECCCCEEEEEECCHHHHHHHHHHHHCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA