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The map label for this gene is ynbA [H]

Identifier: 226223380

GI number: 226223380

Start: 787146

End: 788402

Strand: Direct

Name: ynbA [H]

Synonym: Lm4b_00778

Alternate gene names: 226223380

Gene position: 787146-788402 (Clockwise)

Preceding gene: 226223379

Following gene: 226223381

Centisome position: 27.02

GC content: 39.94

Gene sequence:

>1257_bases
ATGGAGAAAAAAGTATTAATCGTTGGTATAAGTCAGAAACAAAAAGATTTTGATTATTCAATGGAAGAATTAGCCAATTT
AGCGGCTGCAAATAATATGGAAGTAGTGGGCGAAATACGGCAAAATATCGACCGTGAAAATCGCGCTACTTATGTTGGAA
AAGGAAAAGTGGATGAAATCAAAGGGCTGGCAGAAATGCAAGATGCTCGCTTGATTATTTTTAACGATGAACTTTCACCG
TCGCAAATTAGAAACCTAGAAGAAGCGTTGGAACTGGATGTAATGGACAGAACAGGCTTGATTTTAGCTATTTTCGCGAA
CCGAGCAAAAACAAAAGAAGCTCAACTCCAAGTCCAAATCGCCAAATTACAATATGAACTTCCGCGAATTTTTGGACAAG
GCGAAGACATGGACCAACAAAGCGGAAAAGGCGGACTTAGCAACCGTGGTTCGGGCGAAAAGAAAATTGAAACCGATCGC
CGTACCATCAAATACCAAATCCGCCATTTACAAAAAGAGTTAGACATGCTCGTGGATGACCGTGAAGTACGCCGTCGCAA
ACGAAAGAAAAATGAAATTCCTGTGGTGTCACTTGTTGGTTATACCAATGCTGGAAAATCCACAACGATGAATGGGCTAG
TACGTGCTTATAGTGAAACTGCTGAAAAACAAGTTTTTGAGAAAGACATGCTCTTTGCTACGCTTGAAACAAGTGTGCGC
GAAATTGTTTTACCAGATAACAAGCAATTTTTACTCACAGATACAGTTGGTTTTGTTAGCAAACTTCCCCATCAATTAGT
GAAAGCATTCCGCTCCACACTAGAAGAAGCACGCGATGCAGATTTACTCATTCATGTGGTAGATTATTCGGATCCGCATT
ATAAAACAATGATGAAGACGACGGAAGAAACGTTGAAAGCTGTTGGTGTGGAGGATGTTCCAGTTATTTATGCATACAAC
AAAGCGGATTTAATAGAAGGAGAAATTTATCCTAAGCAAACGGAAAATACAATTGTCTTTTCCGCGCGTGAAAAAGAAAG
TTTGGAATTTCTAACCGAAGTAATTCGTAAAGAACTTTTTGCTAGCTACGAGAAAGCGACTTTTTTAATTCCGTTTGAGG
CGGGGAATGTTGTCGCTTATTTAAATGATCATGCAGATGTTTTAGCTACTGAATACTTGGAGAATGGCACGCAGATTGTG
GCTGAAGTTAGTCCGGCCGATTTACAGAAGCTAGCAGAATACCAAGTAGCTGAGTAA

Upstream 100 bases:

>100_bases
TTCATTTGAAAGCAAGCTAGTATCTTTGGATGCTATTTTTGTGTTTTCTTCTACTCAAAAACCCTGACCGCGCTGAATCT
ATTTCAGGAGGTCCTTTTTT

Downstream 100 bases:

>100_bases
AGCGAGTTCCAGCTGAATTTGCTATAATGAAACATACAGCAAATTTAGTGAGGAGATTTCTAACTATGAAAAAAACTGGA
TGGGGTATACTTGGGGCAGT

Product: ATP/GTP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 418; Mature: 418

Protein sequence:

>418_residues
MEKKVLIVGISQKQKDFDYSMEELANLAAANNMEVVGEIRQNIDRENRATYVGKGKVDEIKGLAEMQDARLIIFNDELSP
SQIRNLEEALELDVMDRTGLILAIFANRAKTKEAQLQVQIAKLQYELPRIFGQGEDMDQQSGKGGLSNRGSGEKKIETDR
RTIKYQIRHLQKELDMLVDDREVRRRKRKKNEIPVVSLVGYTNAGKSTTMNGLVRAYSETAEKQVFEKDMLFATLETSVR
EIVLPDNKQFLLTDTVGFVSKLPHQLVKAFRSTLEEARDADLLIHVVDYSDPHYKTMMKTTEETLKAVGVEDVPVIYAYN
KADLIEGEIYPKQTENTIVFSAREKESLEFLTEVIRKELFASYEKATFLIPFEAGNVVAYLNDHADVLATEYLENGTQIV
AEVSPADLQKLAEYQVAE

Sequences:

>Translated_418_residues
MEKKVLIVGISQKQKDFDYSMEELANLAAANNMEVVGEIRQNIDRENRATYVGKGKVDEIKGLAEMQDARLIIFNDELSP
SQIRNLEEALELDVMDRTGLILAIFANRAKTKEAQLQVQIAKLQYELPRIFGQGEDMDQQSGKGGLSNRGSGEKKIETDR
RTIKYQIRHLQKELDMLVDDREVRRRKRKKNEIPVVSLVGYTNAGKSTTMNGLVRAYSETAEKQVFEKDMLFATLETSVR
EIVLPDNKQFLLTDTVGFVSKLPHQLVKAFRSTLEEARDADLLIHVVDYSDPHYKTMMKTTEETLKAVGVEDVPVIYAYN
KADLIEGEIYPKQTENTIVFSAREKESLEFLTEVIRKELFASYEKATFLIPFEAGNVVAYLNDHADVLATEYLENGTQIV
AEVSPADLQKLAEYQVAE
>Mature_418_residues
MEKKVLIVGISQKQKDFDYSMEELANLAAANNMEVVGEIRQNIDRENRATYVGKGKVDEIKGLAEMQDARLIIFNDELSP
SQIRNLEEALELDVMDRTGLILAIFANRAKTKEAQLQVQIAKLQYELPRIFGQGEDMDQQSGKGGLSNRGSGEKKIETDR
RTIKYQIRHLQKELDMLVDDREVRRRKRKKNEIPVVSLVGYTNAGKSTTMNGLVRAYSETAEKQVFEKDMLFATLETSVR
EIVLPDNKQFLLTDTVGFVSKLPHQLVKAFRSTLEEARDADLLIHVVDYSDPHYKTMMKTTEETLKAVGVEDVPVIYAYN
KADLIEGEIYPKQTENTIVFSAREKESLEFLTEVIRKELFASYEKATFLIPFEAGNVVAYLNDHADVLATEYLENGTQIV
AEVSPADLQKLAEYQVAE

Specific function: Unknown

COG id: COG2262

COG function: function code R; GTPases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI310124269, Length=222, Percent_Identity=34.2342342342342, Blast_Score=124, Evalue=2e-28,
Organism=Homo sapiens, GI310124267, Length=222, Percent_Identity=34.2342342342342, Blast_Score=124, Evalue=2e-28,
Organism=Homo sapiens, GI310124171, Length=222, Percent_Identity=34.2342342342342, Blast_Score=124, Evalue=2e-28,
Organism=Homo sapiens, GI310124169, Length=222, Percent_Identity=34.2342342342342, Blast_Score=124, Evalue=2e-28,
Organism=Homo sapiens, GI310133116, Length=230, Percent_Identity=33.4782608695652, Blast_Score=121, Evalue=1e-27,
Organism=Homo sapiens, GI310133118, Length=222, Percent_Identity=33.7837837837838, Blast_Score=120, Evalue=2e-27,
Organism=Escherichia coli, GI1790615, Length=382, Percent_Identity=34.8167539267016, Blast_Score=223, Evalue=3e-59,
Organism=Caenorhabditis elegans, GI17561038, Length=338, Percent_Identity=30.1775147928994, Blast_Score=131, Evalue=6e-31,
Organism=Drosophila melanogaster, GI24650079, Length=390, Percent_Identity=31.025641025641, Blast_Score=144, Evalue=2e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016496
- InterPro:   IPR006073
- InterPro:   IPR002917 [H]

Pfam domain/function: PF01926 MMR_HSR1 [H]

EC number: NA

Molecular weight: Translated: 47444; Mature: 47444

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKKVLIVGISQKQKDFDYSMEELANLAAANNMEVVGEIRQNIDRENRATYVGKGKVDEI
CCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCEEEECCCCHHHH
KGLAEMQDARLIIFNDELSPSQIRNLEEALELDVMDRTGLILAIFANRAKTKEAQLQVQI
HHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHEEHH
AKLQYELPRIFGQGEDMDQQSGKGGLSNRGSGEKKIETDRRTIKYQIRHLQKELDMLVDD
HHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
REVRRRKRKKNEIPVVSLVGYTNAGKSTTMNGLVRAYSETAEKQVFEKDMLFATLETSVR
HHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EIVLPDNKQFLLTDTVGFVSKLPHQLVKAFRSTLEEARDADLLIHVVDYSDPHYKTMMKT
EEECCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHH
TEETLKAVGVEDVPVIYAYNKADLIEGEIYPKQTENTIVFSAREKESLEFLTEVIRKELF
HHHHHHHCCCCCCCEEEEECCCCEECCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHH
ASYEKATFLIPFEAGNVVAYLNDHADVLATEYLENGTQIVAEVSPADLQKLAEYQVAE
HHHCCEEEEEEECCCCEEEEECCCHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCC
>Mature Secondary Structure
MEKKVLIVGISQKQKDFDYSMEELANLAAANNMEVVGEIRQNIDRENRATYVGKGKVDEI
CCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCEEEECCCCHHHH
KGLAEMQDARLIIFNDELSPSQIRNLEEALELDVMDRTGLILAIFANRAKTKEAQLQVQI
HHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHEEHH
AKLQYELPRIFGQGEDMDQQSGKGGLSNRGSGEKKIETDRRTIKYQIRHLQKELDMLVDD
HHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
REVRRRKRKKNEIPVVSLVGYTNAGKSTTMNGLVRAYSETAEKQVFEKDMLFATLETSVR
HHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EIVLPDNKQFLLTDTVGFVSKLPHQLVKAFRSTLEEARDADLLIHVVDYSDPHYKTMMKT
EEECCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHH
TEETLKAVGVEDVPVIYAYNKADLIEGEIYPKQTENTIVFSAREKESLEFLTEVIRKELF
HHHHHHHCCCCCCCEEEEECCCCEECCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHH
ASYEKATFLIPFEAGNVVAYLNDHADVLATEYLENGTQIVAEVSPADLQKLAEYQVAE
HHHCCEEEEEEECCCCEEEEECCCHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]