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The map label for this gene is 226223150

Identifier: 226223150

GI number: 226223150

Start: 559542

End: 560744

Strand: Reverse

Name: 226223150

Synonym: Lm4b_00547b

Alternate gene names: NA

Gene position: 560744-559542 (Counterclockwise)

Preceding gene: 226223151

Following gene: 226223149

Centisome position: 19.25

GC content: 32.42

Gene sequence:

>1203_bases
GTGTTGCCTCTTTTTTATGTAATTTCTCACTATTCTAACTTACCATTTCGAGCTTGGGAACAGCGTAAGTTAGGGGACTT
AGTTGTAGATTATGTTGAAAAGACAAGTGTACAAAATCAATTTCCCATGCTAACTTCATCTCAACAAAAAGGGATAGTTT
TGCAAGAAGACTATTTTGCAAATCGACAAGTAACCACAGAAAATAATATTGGTTACTTTGTACTACCTAGAGGATATTTC
ACATTCCGTAGTCGAAGCGATAATGATGTGTTTGTGTTTAACCGTAATGACATTATTGATAGAGGGATTATAAGCTATTT
TTATCCTGTATTTACTTTAAAATCTGCTGATTCCGACTTCTTCTTAAGGCGTATTAACAATGGAATCCAACGACAATTAT
CTATTCAAGCAGAGGGAACAGGTCAACATGTCCTGTCTCTAAAAAAATTTAAAAATATAGTAGCAATGTTTCCTAGTGAG
GGAGAACAAAAAAAAATCGGTTCTTTCTTCAAACAACTCGACGACACTATCGCTCTTCATCAGCGTAAGTTAGATACTTT
GAAACAGATGAAGAAAGGACTCTTACAGCAAATGTTCCCTAAAAGCGAAGAGGATGTCCCAAAGATTCGTTTTGCTGATT
TTGACGAAGAATGGTACCAGCGTAAGTTGGGAGAAGAATTTGAAAAAATAAATGAGCGTAATGACGGTTCTTTCGGCAAA
ACTCATTGGATATCAGTAGCAAAAATGTACTTTGTAGAACCTAATAAGGTCTTATCAAATAACATAGATACAAGGACATA
TGTAATGCGAAAAGGTGATATTGCATTTGAAGGACATTCAAATACCGATTTTAAATTTGGGAGATTTGTAGCGAACGACA
TTGGCCCAGGGATAGTATCGGAATTATTTCCAGTATATCGTCATAAAACTAACTATGATAATAATTATTGGAAAAATGCT
ATTCAATTAGAGCATATAATGGCACCTATTTATTCAAAGTCTATAACTTCATCCGGTAATTCATCAAACAAACTTGATTC
AAAGCATTTCTTAAATCAAAAAATTTATATTGCTGACTTTGAAGAACAAGAAAAAATTGGTTCAATTTTTAAACAATTGG
ATAATACCATTATTCTCTATCAAAATAAATTAAATAAATTTGATATTCTCAAAAAAGCTTATTTGCAAACTATGTTCATT
TAA

Upstream 100 bases:

>100_bases
CTGGACGAACTTTTAGAAGCACATAAAGAGTATTTACCGAATTTCTTTAAATAAATGGAATGTAGTTTTTAAGTATAATA
GTTTTTGAAAGAGGCATCTT

Downstream 100 bases:

>100_bases
TTAAAACATTTACACTTAAACTAACTCCTAAGATAATAATAAAAGGTGATTAACTCATCTATTTATTATTTTAGGAGGTT
TTTTATGAAAGCAAAAAAGA

Product: specificity determinant HsdS

Products: NA

Alternate protein names: Restriction System DNA Specificity Subunit; Type I R/M System Specificity Subunit; Restriction System DNA Specificity Domain; Specificity Determinant HsdS; Restriction System DNA Specificity Domain Protein; Type I Restriction Endonuclease S Subunit; Restriction Endonuclease S Subunit; Type I Restriction Specificity Protein; Type I Site-Specific Deoxyribonuclease; Type IC Specificity Subunit; Type I Site-Specific Deoxyribonucleacificity Subunit; Type I Restriction System S Subunit; HsdS Protein; Type I Restriction- System S Subunit; Type I Restriction- System DNA Specificity Subunit; Type Ic Restriction- System HsdS Subunit; Type I Restriction DNA Specificity Domain Protein; Restriction- Type I S Subunit; Type I Restriction- System S Protein; HsdS Specificity Protein Of Type I Restriction- System; Type I RM System Specificity Subunit HsdIB; Type I Restriction S Subunit; Type I Restriction System; Type I Restriction/ System Specificity Subunit; Type I Restriction DNA Specificity Protein; Type I Restriction Specificity Subunit; Type I Restriction Hsds Subunit; Type I Restriction Hsds Subunit; Restriction System Specificity Subunit; HsdS-Like Protein Of Type I Restriction- System; Restriction System Subunit S; Type I Restriction- System Specificity Subunit Protein; Type-I Specificity Determinant Subunit; Type I Restriction- System Restriction Subunit; Type IC HsdS Subunit; Specificity Subunit

Number of amino acids: Translated: 400; Mature: 400

Protein sequence:

>400_residues
MLPLFYVISHYSNLPFRAWEQRKLGDLVVDYVEKTSVQNQFPMLTSSQQKGIVLQEDYFANRQVTTENNIGYFVLPRGYF
TFRSRSDNDVFVFNRNDIIDRGIISYFYPVFTLKSADSDFFLRRINNGIQRQLSIQAEGTGQHVLSLKKFKNIVAMFPSE
GEQKKIGSFFKQLDDTIALHQRKLDTLKQMKKGLLQQMFPKSEEDVPKIRFADFDEEWYQRKLGEEFEKINERNDGSFGK
THWISVAKMYFVEPNKVLSNNIDTRTYVMRKGDIAFEGHSNTDFKFGRFVANDIGPGIVSELFPVYRHKTNYDNNYWKNA
IQLEHIMAPIYSKSITSSGNSSNKLDSKHFLNQKIYIADFEEQEKIGSIFKQLDNTIILYQNKLNKFDILKKAYLQTMFI

Sequences:

>Translated_400_residues
MLPLFYVISHYSNLPFRAWEQRKLGDLVVDYVEKTSVQNQFPMLTSSQQKGIVLQEDYFANRQVTTENNIGYFVLPRGYF
TFRSRSDNDVFVFNRNDIIDRGIISYFYPVFTLKSADSDFFLRRINNGIQRQLSIQAEGTGQHVLSLKKFKNIVAMFPSE
GEQKKIGSFFKQLDDTIALHQRKLDTLKQMKKGLLQQMFPKSEEDVPKIRFADFDEEWYQRKLGEEFEKINERNDGSFGK
THWISVAKMYFVEPNKVLSNNIDTRTYVMRKGDIAFEGHSNTDFKFGRFVANDIGPGIVSELFPVYRHKTNYDNNYWKNA
IQLEHIMAPIYSKSITSSGNSSNKLDSKHFLNQKIYIADFEEQEKIGSIFKQLDNTIILYQNKLNKFDILKKAYLQTMFI
>Mature_400_residues
MLPLFYVISHYSNLPFRAWEQRKLGDLVVDYVEKTSVQNQFPMLTSSQQKGIVLQEDYFANRQVTTENNIGYFVLPRGYF
TFRSRSDNDVFVFNRNDIIDRGIISYFYPVFTLKSADSDFFLRRINNGIQRQLSIQAEGTGQHVLSLKKFKNIVAMFPSE
GEQKKIGSFFKQLDDTIALHQRKLDTLKQMKKGLLQQMFPKSEEDVPKIRFADFDEEWYQRKLGEEFEKINERNDGSFGK
THWISVAKMYFVEPNKVLSNNIDTRTYVMRKGDIAFEGHSNTDFKFGRFVANDIGPGIVSELFPVYRHKTNYDNNYWKNA
IQLEHIMAPIYSKSITSSGNSSNKLDSKHFLNQKIYIADFEEQEKIGSIFKQLDNTIILYQNKLNKFDILKKAYLQTMFI

Specific function: Unknown

COG id: COG0732

COG function: function code V; Restriction endonuclease S subunits

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 46890; Mature: 46890

Theoretical pI: Translated: 9.57; Mature: 9.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPLFYVISHYSNLPFRAWEQRKLGDLVVDYVEKTSVQNQFPMLTSSQQKGIVLQEDYFA
CCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCC
NRQVTTENNIGYFVLPRGYFTFRSRSDNDVFVFNRNDIIDRGIISYFYPVFTLKSADSDF
CCEEEECCCCEEEEECCCEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHEEECCCHHH
FLRRINNGIQRQLSIQAEGTGQHVLSLKKFKNIVAMFPSEGEQKKIGSFFKQLDDTIALH
HHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHH
QRKLDTLKQMKKGLLQQMFPKSEEDVPKIRFADFDEEWYQRKLGEEFEKINERNDGSFGK
HHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCC
THWISVAKMYFVEPNKVLSNNIDTRTYVMRKGDIAFEGHSNTDFKFGRFVANDIGPGIVS
HHHHEEEHHEEECCCHHHHCCCCCEEEEEECCCEEEECCCCCCCHHHHHHHHHCCHHHHH
ELFPVYRHKTNYDNNYWKNAIQLEHIMAPIYSKSITSSGNSSNKLDSKHFLNQKIYIADF
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCEEEEECC
EEQEKIGSIFKQLDNTIILYQNKLNKFDILKKAYLQTMFI
HHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLPLFYVISHYSNLPFRAWEQRKLGDLVVDYVEKTSVQNQFPMLTSSQQKGIVLQEDYFA
CCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCC
NRQVTTENNIGYFVLPRGYFTFRSRSDNDVFVFNRNDIIDRGIISYFYPVFTLKSADSDF
CCEEEECCCCEEEEECCCEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHEEECCCHHH
FLRRINNGIQRQLSIQAEGTGQHVLSLKKFKNIVAMFPSEGEQKKIGSFFKQLDDTIALH
HHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHH
QRKLDTLKQMKKGLLQQMFPKSEEDVPKIRFADFDEEWYQRKLGEEFEKINERNDGSFGK
HHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCC
THWISVAKMYFVEPNKVLSNNIDTRTYVMRKGDIAFEGHSNTDFKFGRFVANDIGPGIVS
HHHHEEEHHEEECCCHHHHCCCCCEEEEEECCCEEEECCCCCCCHHHHHHHHHCCHHHHH
ELFPVYRHKTNYDNNYWKNAIQLEHIMAPIYSKSITSSGNSSNKLDSKHFLNQKIYIADF
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCEEEEECC
EEQEKIGSIFKQLDNTIILYQNKLNKFDILKKAYLQTMFI
HHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA