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The map label for this gene is int [H]

Identifier: 226223149

GI number: 226223149

Start: 558528

End: 559457

Strand: Reverse

Name: int [H]

Synonym: Lm4b_00546

Alternate gene names: 226223149

Gene position: 559457-558528 (Counterclockwise)

Preceding gene: 226223150

Following gene: 226223143

Centisome position: 19.21

GC content: 30.54

Gene sequence:

>930_bases
ATGAAAGCAAAAAAGAGAAAAGAACAAACATTTCATGAGTATTTTAAAGAATGGGTAGATCTTTATAAAGTTGGAGCGAT
ACGTTCAATTACCCTGCAAAAATACTATGTAACAGAACAAAAAATTCAAGAACTTGTACCAGAATTAAAAATAAAGGACC
TAGACCGTTATACTTATCAGCAGCTGCTAAATAATTATGCACTTACTCATGAGAAACAAACAACTATGGATTTCCATCAT
CACCTGAAGGGCGCTATTTTAGATGCGGTAGATGAGGGGGTTCTAAATCAAAACCCCACAAGAAAAATTGTGATTAAAGG
AAAAAATCCTCGACCTAAAAAAGCAAAATTTTTAAATCAATTTGAAGTTCAAGTTTTATTAAAAGAATTAAATTTAAAGG
AGGATATAAATTGGGATTGGTTTATTCTATTAATCATTAAAACAGGACTTCGATTTTCAGAAGCATTAGCTCTAACACCT
TCAGACTTTGATTTTTCCACACAAAAAATTAGTATTAATAAAACCTGGGATTACAAAATGGTTACTGGTTCTTTTCAGCC
AACAAAAAACGAATCTTCCAATAGGAAGATTCAAATTGATTGGCAATTAGCAATGCAATTTTCCCAGTTAATTAAAATGA
AAGATTCTGATAAACCTATCTTTGTTAAAAGTAGAGTATTCAATTCTACTATTAATAATCGTTTAAAAGTGTTGTGTCAG
AATGCAAATATACCAACTATTACAATTCATAGTTTACGACATACCCATGCATCTTTGCTATTATTTGCTGGAGTTTCAAT
TGCTAGTGTTGCGAATAGGTTAGGTCATTCAAGTATGACTACTACCCAGGAAACATATCTTCATATTATTCAGGAATTGG
AAAATCAAGATAATGATAAAATTATACGCCATTTATCAATGTTAATGTGA

Upstream 100 bases:

>100_bases
AACTATGTTCATTTAATTAAAACATTTACACTTAAACTAACTCCTAAGATAATAATAAAAGGTGATTAACTCATCTATTT
ATTATTTTAGGAGGTTTTTT

Downstream 100 bases:

>100_bases
TAAATAATCCCCATCTCATAAGAATAGATGGGGATTAAATTATATAAACATATTTTGTAAATAGGCTTTTTTTAGAGAAG
AGAGTTTCTTTAGTTTATTT

Product: bacteriophage integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 309

Protein sequence:

>309_residues
MKAKKRKEQTFHEYFKEWVDLYKVGAIRSITLQKYYVTEQKIQELVPELKIKDLDRYTYQQLLNNYALTHEKQTTMDFHH
HLKGAILDAVDEGVLNQNPTRKIVIKGKNPRPKKAKFLNQFEVQVLLKELNLKEDINWDWFILLIIKTGLRFSEALALTP
SDFDFSTQKISINKTWDYKMVTGSFQPTKNESSNRKIQIDWQLAMQFSQLIKMKDSDKPIFVKSRVFNSTINNRLKVLCQ
NANIPTITIHSLRHTHASLLLFAGVSIASVANRLGHSSMTTTQETYLHIIQELENQDNDKIIRHLSMLM

Sequences:

>Translated_309_residues
MKAKKRKEQTFHEYFKEWVDLYKVGAIRSITLQKYYVTEQKIQELVPELKIKDLDRYTYQQLLNNYALTHEKQTTMDFHH
HLKGAILDAVDEGVLNQNPTRKIVIKGKNPRPKKAKFLNQFEVQVLLKELNLKEDINWDWFILLIIKTGLRFSEALALTP
SDFDFSTQKISINKTWDYKMVTGSFQPTKNESSNRKIQIDWQLAMQFSQLIKMKDSDKPIFVKSRVFNSTINNRLKVLCQ
NANIPTITIHSLRHTHASLLLFAGVSIASVANRLGHSSMTTTQETYLHIIQELENQDNDKIIRHLSMLM
>Mature_309_residues
MKAKKRKEQTFHEYFKEWVDLYKVGAIRSITLQKYYVTEQKIQELVPELKIKDLDRYTYQQLLNNYALTHEKQTTMDFHH
HLKGAILDAVDEGVLNQNPTRKIVIKGKNPRPKKAKFLNQFEVQVLLKELNLKEDINWDWFILLIIKTGLRFSEALALTP
SDFDFSTQKISINKTWDYKMVTGSFQPTKNESSNRKIQIDWQLAMQFSQLIKMKDSDKPIFVKSRVFNSTINNRLKVLCQ
NANIPTITIHSLRHTHASLLLFAGVSIASVANRLGHSSMTTTQETYLHIIQELENQDNDKIIRHLSMLM

Specific function: Putative integrase that is involved in the insertion of the integrative and conjugative element ICEBs1. Required for the excision of ICEBs1 from the donor cell genome and subsequent integration in the recipient cell genome. Appears not to be transferred t

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 36137; Mature: 36137

Theoretical pI: Translated: 10.11; Mature: 10.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAKKRKEQTFHEYFKEWVDLYKVGAIRSITLQKYYVTEQKIQELVPELKIKDLDRYTYQ
CCCHHHHHHHHHHHHHHHHHHHHHCCHHEEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
QLLNNYALTHEKQTTMDFHHHLKGAILDAVDEGVLNQNPTRKIVIKGKNPRPKKAKFLNQ
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHH
FEVQVLLKELNLKEDINWDWFILLIIKTGLRFSEALALTPSDFDFSTQKISINKTWDYKM
HHHHHHHHHCCCCCCCCCCCEEEEEHHHCCCHHHEEEECCCCCCCCCEEEEEECCCCEEE
VTGSFQPTKNESSNRKIQIDWQLAMQFSQLIKMKDSDKPIFVKSRVFNSTINNRLKVLCQ
EECCCCCCCCCCCCCEEEEEHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHEEEC
NANIPTITIHSLRHTHASLLLFAGVSIASVANRLGHSSMTTTQETYLHIIQELENQDNDK
CCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHH
IIRHLSMLM
HHHHHHHHC
>Mature Secondary Structure
MKAKKRKEQTFHEYFKEWVDLYKVGAIRSITLQKYYVTEQKIQELVPELKIKDLDRYTYQ
CCCHHHHHHHHHHHHHHHHHHHHHCCHHEEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
QLLNNYALTHEKQTTMDFHHHLKGAILDAVDEGVLNQNPTRKIVIKGKNPRPKKAKFLNQ
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHH
FEVQVLLKELNLKEDINWDWFILLIIKTGLRFSEALALTPSDFDFSTQKISINKTWDYKM
HHHHHHHHHCCCCCCCCCCCEEEEEHHHCCCHHHEEEECCCCCCCCCEEEEEECCCCEEE
VTGSFQPTKNESSNRKIQIDWQLAMQFSQLIKMKDSDKPIFVKSRVFNSTINNRLKVLCQ
EECCCCCCCCCCCCCEEEEEHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHEEEC
NANIPTITIHSLRHTHASLLLFAGVSIASVANRLGHSSMTTTQETYLHIIQELENQDNDK
CCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHH
IIRHLSMLM
HHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]