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The map label for this gene is yulB [H]

Identifier: 226222987

GI number: 226222987

Start: 389659

End: 390429

Strand: Direct

Name: yulB [H]

Synonym: Lm4b_00379

Alternate gene names: 226222987

Gene position: 389659-390429 (Clockwise)

Preceding gene: 226222986

Following gene: 226222991

Centisome position: 13.38

GC content: 38.52

Gene sequence:

>771_bases
ATGTTAAGCACAGCGAAGGAACGGCAACTAAAAATCGTTAACCGGCTAAAAGTGGAACAATTTATGCGGATTATTGATTT
AGTGGAGCTTGTCAACTACAGCGAAGCCACTGTTAAACGGGATTTAGTAGAATTAGAAAAAGAAGGACTTGTGAGACGAA
CAAGAGGCGGCGCAATGATTATCGATAATAAAAAAATCGATTTGCCTTATTTAATGAAAATGAATGAGCGAAGTAATGAA
ACGAGTAAAATAAGAATTGCCGATATTGCCAAATCACTGATTCGCGATGATATGGTGATTTTCTTAGACTCTAGCTCAAC
ATCACTGCATTTAATCGACGTTTTAAGTAAATTTGATGGACTGCAAATTATTACAAACGGGGTCATGACGGCTTCCATGC
TATCAGAATTTACAAATGCAAGAGTTAGTATTTTAGGAGGATCGATTTTAACGAAGCGATATACGGTGAACGGCGCAAAA
GCATACAATGACGCTTTAACTTATAATGCGGATATTGCTTTTGTTTCATGCCGGGGGATCGACTATGACAAAGGTGCAAC
GGAAACACATGAAGGTGAAGCACTCATCAAACAAGCTTTCAGGCGCCAGTCAAGTTCGCTCGTTTTACTTGTCACCGAAG
AAAAAGTAGGACACAAGTTTATGCACCAAAGCTTAGCATGTCATGATATTGACTATTTAATTACGGACTTCAAACTGGAC
CCAGATGTAGAGGAACAGTTCAAAACCCATCAAATTACTTGTTTGTATTAG

Upstream 100 bases:

>100_bases
AATTACACATTTTAAATACTACTGGTCAAAGAGATAAATACTAATAAGAAGGGGAGAAGCGCTAGTTATAGTGCTTTTGC
CCTTTAAGGAGTGGAGGAAC

Downstream 100 bases:

>100_bases
ATTTTATACTTAAATAGGCAAAAATAATCGTAAGTACTAAAAATAAAACAGGTATTACCAATAAACTTCCGAAAAAGTGA
ATGTCATTAAATTCTTCGCT

Product: transcriptional regulator (DeoR family)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MLSTAKERQLKIVNRLKVEQFMRIIDLVELVNYSEATVKRDLVELEKEGLVRRTRGGAMIIDNKKIDLPYLMKMNERSNE
TSKIRIADIAKSLIRDDMVIFLDSSSTSLHLIDVLSKFDGLQIITNGVMTASMLSEFTNARVSILGGSILTKRYTVNGAK
AYNDALTYNADIAFVSCRGIDYDKGATETHEGEALIKQAFRRQSSSLVLLVTEEKVGHKFMHQSLACHDIDYLITDFKLD
PDVEEQFKTHQITCLY

Sequences:

>Translated_256_residues
MLSTAKERQLKIVNRLKVEQFMRIIDLVELVNYSEATVKRDLVELEKEGLVRRTRGGAMIIDNKKIDLPYLMKMNERSNE
TSKIRIADIAKSLIRDDMVIFLDSSSTSLHLIDVLSKFDGLQIITNGVMTASMLSEFTNARVSILGGSILTKRYTVNGAK
AYNDALTYNADIAFVSCRGIDYDKGATETHEGEALIKQAFRRQSSSLVLLVTEEKVGHKFMHQSLACHDIDYLITDFKLD
PDVEEQFKTHQITCLY
>Mature_256_residues
MLSTAKERQLKIVNRLKVEQFMRIIDLVELVNYSEATVKRDLVELEKEGLVRRTRGGAMIIDNKKIDLPYLMKMNERSNE
TSKIRIADIAKSLIRDDMVIFLDSSSTSLHLIDVLSKFDGLQIITNGVMTASMLSEFTNARVSILGGSILTKRYTVNGAK
AYNDALTYNADIAFVSCRGIDYDKGATETHEGEALIKQAFRRQSSSLVLLVTEEKVGHKFMHQSLACHDIDYLITDFKLD
PDVEEQFKTHQITCLY

Specific function: Unknown

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789059, Length=238, Percent_Identity=28.9915966386555, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1788069, Length=232, Percent_Identity=29.3103448275862, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1789519, Length=247, Percent_Identity=24.2914979757085, Blast_Score=87, Evalue=8e-19,
Organism=Escherichia coli, GI1790753, Length=225, Percent_Identity=26.2222222222222, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1789829, Length=246, Percent_Identity=24.390243902439, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1790635, Length=237, Percent_Identity=25.7383966244726, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI226510968, Length=230, Percent_Identity=24.7826086956522, Blast_Score=68, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 29020; Mature: 29020

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSTAKERQLKIVNRLKVEQFMRIIDLVELVNYSEATVKRDLVELEKEGLVRRTRGGAMI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEECCCCEEE
IDNKKIDLPYLMKMNERSNETSKIRIADIAKSLIRDDMVIFLDSSSTSLHLIDVLSKFDG
EECCCCCCHHHEEECCCCCCCCEEEHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHCCC
LQIITNGVMTASMLSEFTNARVSILGGSILTKRYTVNGAKAYNDALTYNADIAFVSCRGI
CEEHHHHHHHHHHHHHHHCCEEEEECCCEEEEEEEECCCHHHCCCEEECCCEEEEEEECC
DYDKGATETHEGEALIKQAFRRQSSSLVLLVTEEKVGHKFMHQSLACHDIDYLITDFKLD
CCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCHHHHEECCCCC
PDVEEQFKTHQITCLY
CCHHHHHCCCEEEEEC
>Mature Secondary Structure
MLSTAKERQLKIVNRLKVEQFMRIIDLVELVNYSEATVKRDLVELEKEGLVRRTRGGAMI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEECCCCEEE
IDNKKIDLPYLMKMNERSNETSKIRIADIAKSLIRDDMVIFLDSSSTSLHLIDVLSKFDG
EECCCCCCHHHEEECCCCCCCCEEEHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHCCC
LQIITNGVMTASMLSEFTNARVSILGGSILTKRYTVNGAKAYNDALTYNADIAFVSCRGI
CEEHHHHHHHHHHHHHHHCCEEEEECCCEEEEEEEECCCHHHCCCEEECCCEEEEEEECC
DYDKGATETHEGEALIKQAFRRQSSSLVLLVTEEKVGHKFMHQSLACHDIDYLITDFKLD
CCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCHHHHEECCCCC
PDVEEQFKTHQITCLY
CCHHHHHCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9274030; 9384377 [H]