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The map label for this gene is lytB [H]

Identifier: 225861955

GI number: 225861955

Start: 1996690

End: 1998555

Strand: Reverse

Name: lytB [H]

Synonym: SPT_2148

Alternate gene names: 225861955

Gene position: 1998555-1996690 (Counterclockwise)

Preceding gene: 225861958

Following gene: 225861950

Centisome position: 94.62

GC content: 32.05

Gene sequence:

>1866_bases
ATGAAAAAAACTACAATATTATCATTAACTACAGTTGCGGTTATTTTAGCAGCATATGTCCCTAATGAACCAATCCTAGC
AGATACTCCTAGTTCGGAAGTAATCAAAGAGACTAAAGTTGGAAGTATTATTCAACAAAATAATATCAAATATAAGGTTC
TAACTGTAGAAGGTAACATAGGAACTGTTCAAGTGGGTAATGGAGTTACTCCTGTAGAGTTTGAAGCTGGTCAAGATGGA
AAACCATTCACGATTCCTACAAAAATCACAGTAGGTGATAAAGTATTTACCGTTACTGAAGTAGCTAGTCAAGCTTTTAG
TTATTATCCAGATGAAACAGGTAGAATTGTCTACTATCCTAGCTCTATTACTATCCCATCAAGCATAAAAAAAATACAAA
AAAAAGGCTTCCATGGAAGTAAAGCTAAAACTATTATTTTTGACAAAGGCAGTCAGCTGGAGAAAATTGAAGATAGAGCT
TTTGATTTTTCTGAATTAGAAGAGATTGAATTGCCTGCATCTCTAGAATATATTGGAACAAGTGCATTTTCTTTTAGTCA
AAAATTGAAAAAGCTAACCTTTTCCTCAAGTTCAAAATTAGAATTAATATCACATGAGGCTTTTGCTAATTTATCAAATT
TAGAGAAACTAACATTACCAAAATCGGTTAAAACATTAGGAAGTAATCTATTTAGACTCACTACTAGCTTAAAACATGTT
GATGTTGAAGAAGGAAATGAATCGTTTGCCTCAGTTGATGGTGTTTTGTTTTCAAAAGATAAAACTCAATTAATTTATTA
TCCAAGTCAAAAAAATGACGAAAGTTATAAAACGCCTAAGGAGACAAAAGAACTTGCATCATATTCGTTTAATAAAAATT
CTTACTTGAAAAAACTCGAATTGAATGAAGGTTTAGAAAAAATCGGTACTTTTGCATTTGCGGATGCGATTAAACTTGAA
GAAATTAGCTTACCAAATAGTTTAGAAACTATTGAACGTTTAGCCTTTTACGGTAATTTAGAATTAAAAGAACTTATATT
ACCAGATAATGTTAAAAATTTTGGTAAACACGTTATGAACGGTTTACCAAAATTAAAAAGTTTAACAATTGGTAATAATA
TCAACTCATTGCCGTCCTTCTTCCTAAGTGGCGTCTTAGATTCATTAAAGGAAATTCATATTAAGAATAAAAGTACAGAG
TTTTCTGTGAAAAAAGATACATTTGCAATTCCTGAAACTGTTAAGTTCTATGTAACATCAGAACATATAAAAGATGTTCT
TAAATCAAATTTATCTACTAGTAATGATATCATTGTTGAAAAAGTAGATAATATAAAACAAGAAACTGATGTAGCTAAAC
CTAAAAAGAATTCTAATCAGGGAGTAGTTGGTTGGGTTAAAGACAAAGGTTTATGGTATTACTTAAACGAATCAGGTTCA
ATGGCTACTGGTTGGGTTAAAGACAAAGGTTTATGGTATTACTTAAACGAATCAGGTTCAATGGCTACTGGTTGGGTTAA
AGACAAAGGTTTATGGTATTACTTAAATGAATCAGGTTCAATGGCTACTGGTTGGGTTAAAGACAAAGGCTTATGGTATT
ACTTAAACGAATCAGGTTCAATGGCTACTGGTTGGGTTAAAGACAAAGGCTTATGGTATTACTTAAACGAATCAGGTTCA
ATGGCTACTGGTTGGGTTAAAGACAAAGGCTTATGGTATTACTTAAATGAATCAGGTTCAATGGCTACTGGTTGGTTTAC
AGTTTCTGGTAAATGGTACTATACCTATAATTCAGGAGATTTATTAGTAAACACGACTACACCCGATGGCTATCGAGTCA
ATGCTAACGGTGAGTGGGTAGGATAG

Upstream 100 bases:

>100_bases
CTATTCTACTAGATAATGATTGAATAAAACTTTTTATAACAACGGCTAGCAAAGTTATAATTTTATATCTATTAGAAAAT
AAATATGTAAGGAAATTTAA

Downstream 100 bases:

>100_bases
GTATCCATTAGCTAAATCTAATCATTCTGAACTAAAAAATCTTCTTACATATGTAGGAAGATTTTTTGGATTCTCAAAAC
TAGTTTAAAAGACTACGCTA

Product: choline binding protein PcpA

Products: NA

Alternate protein names: Murein hydrolase [H]

Number of amino acids: Translated: 621; Mature: 621

Protein sequence:

>621_residues
MKKTTILSLTTVAVILAAYVPNEPILADTPSSEVIKETKVGSIIQQNNIKYKVLTVEGNIGTVQVGNGVTPVEFEAGQDG
KPFTIPTKITVGDKVFTVTEVASQAFSYYPDETGRIVYYPSSITIPSSIKKIQKKGFHGSKAKTIIFDKGSQLEKIEDRA
FDFSELEEIELPASLEYIGTSAFSFSQKLKKLTFSSSSKLELISHEAFANLSNLEKLTLPKSVKTLGSNLFRLTTSLKHV
DVEEGNESFASVDGVLFSKDKTQLIYYPSQKNDESYKTPKETKELASYSFNKNSYLKKLELNEGLEKIGTFAFADAIKLE
EISLPNSLETIERLAFYGNLELKELILPDNVKNFGKHVMNGLPKLKSLTIGNNINSLPSFFLSGVLDSLKEIHIKNKSTE
FSVKKDTFAIPETVKFYVTSEHIKDVLKSNLSTSNDIIVEKVDNIKQETDVAKPKKNSNQGVVGWVKDKGLWYYLNESGS
MATGWVKDKGLWYYLNESGSMATGWVKDKGLWYYLNESGSMATGWVKDKGLWYYLNESGSMATGWVKDKGLWYYLNESGS
MATGWVKDKGLWYYLNESGSMATGWFTVSGKWYYTYNSGDLLVNTTTPDGYRVNANGEWVG

Sequences:

>Translated_621_residues
MKKTTILSLTTVAVILAAYVPNEPILADTPSSEVIKETKVGSIIQQNNIKYKVLTVEGNIGTVQVGNGVTPVEFEAGQDG
KPFTIPTKITVGDKVFTVTEVASQAFSYYPDETGRIVYYPSSITIPSSIKKIQKKGFHGSKAKTIIFDKGSQLEKIEDRA
FDFSELEEIELPASLEYIGTSAFSFSQKLKKLTFSSSSKLELISHEAFANLSNLEKLTLPKSVKTLGSNLFRLTTSLKHV
DVEEGNESFASVDGVLFSKDKTQLIYYPSQKNDESYKTPKETKELASYSFNKNSYLKKLELNEGLEKIGTFAFADAIKLE
EISLPNSLETIERLAFYGNLELKELILPDNVKNFGKHVMNGLPKLKSLTIGNNINSLPSFFLSGVLDSLKEIHIKNKSTE
FSVKKDTFAIPETVKFYVTSEHIKDVLKSNLSTSNDIIVEKVDNIKQETDVAKPKKNSNQGVVGWVKDKGLWYYLNESGS
MATGWVKDKGLWYYLNESGSMATGWVKDKGLWYYLNESGSMATGWVKDKGLWYYLNESGSMATGWVKDKGLWYYLNESGS
MATGWVKDKGLWYYLNESGSMATGWFTVSGKWYYTYNSGDLLVNTTTPDGYRVNANGEWVG
>Mature_621_residues
MKKTTILSLTTVAVILAAYVPNEPILADTPSSEVIKETKVGSIIQQNNIKYKVLTVEGNIGTVQVGNGVTPVEFEAGQDG
KPFTIPTKITVGDKVFTVTEVASQAFSYYPDETGRIVYYPSSITIPSSIKKIQKKGFHGSKAKTIIFDKGSQLEKIEDRA
FDFSELEEIELPASLEYIGTSAFSFSQKLKKLTFSSSSKLELISHEAFANLSNLEKLTLPKSVKTLGSNLFRLTTSLKHV
DVEEGNESFASVDGVLFSKDKTQLIYYPSQKNDESYKTPKETKELASYSFNKNSYLKKLELNEGLEKIGTFAFADAIKLE
EISLPNSLETIERLAFYGNLELKELILPDNVKNFGKHVMNGLPKLKSLTIGNNINSLPSFFLSGVLDSLKEIHIKNKSTE
FSVKKDTFAIPETVKFYVTSEHIKDVLKSNLSTSNDIIVEKVDNIKQETDVAKPKKNSNQGVVGWVKDKGLWYYLNESGS
MATGWVKDKGLWYYLNESGSMATGWVKDKGLWYYLNESGSMATGWVKDKGLWYYLNESGSMATGWVKDKGLWYYLNESGS
MATGWVKDKGLWYYLNESGSMATGWFTVSGKWYYTYNSGDLLVNTTTPDGYRVNANGEWVG

Specific function: Plays an important role in cell wall degradation and cell separation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 13 cell wall-binding repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018337
- InterPro:   IPR013338
- InterPro:   IPR002901 [H]

Pfam domain/function: PF01473 CW_binding_1; PF01832 Glucosaminidase [H]

EC number: =3.2.1.96 [H]

Molecular weight: Translated: 69314; Mature: 69314

Theoretical pI: Translated: 7.18; Mature: 7.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTTILSLTTVAVILAAYVPNEPILADTPSSEVIKETKVGSIIQQNNIKYKVLTVEGNI
CCCEEEEHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHEECCCCEEEEEEEECCE
GTVQVGNGVTPVEFEAGQDGKPFTIPTKITVGDKVFTVTEVASQAFSYYPDETGRIVYYP
EEEEECCCCCCEEEECCCCCCCEEEEEEEEECCEEEEHHHHHHHHHHCCCCCCCEEEEEC
SSITIPSSIKKIQKKGFHGSKAKTIIFDKGSQLEKIEDRAFDFSELEEIELPASLEYIGT
CCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHCCCHHHHHHCCCCCCCHHHCC
SAFSFSQKLKKLTFSSSSKLELISHEAFANLSNLEKLTLPKSVKTLGSNLFRLTTSLKHV
CHHHHHHHHHHHHCCCCCCEEEEHHHHHHCHHCCHHHCCCHHHHHHHHHHEEEHHHHHEE
DVEEGNESFASVDGVLFSKDKTQLIYYPSQKNDESYKTPKETKELASYSFNKNSYLKKLE
ECCCCCCCHHHHCCEEEECCCEEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCHHEEEEH
LNEGLEKIGTFAFADAIKLEEISLPNSLETIERLAFYGNLELKELILPDNVKNFGKHVMN
HHHHHHHHCCHHHHCCEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHH
GLPKLKSLTIGNNINSLPSFFLSGVLDSLKEIHIKNKSTEFSVKKDTFAIPETVKFYVTS
CCCCCEEEEECCCCHHHHHHHHHHHHHHHHHEEECCCCCEEEEECCCCCCCCEEEEEEEH
EHIKDVLKSNLSTSNDIIVEKVDNIKQETDVAKPKKNSNQGVVGWVKDKGLWYYLNESGS
HHHHHHHHHCCCCCCCEEEEHHHHHHHHHHCCCCCCCCCCCEEEEEECCCEEEEECCCCC
MATGWVKDKGLWYYLNESGSMATGWVKDKGLWYYLNESGSMATGWVKDKGLWYYLNESGS
EEEEEEECCCEEEEECCCCCEEEEEEECCCEEEEECCCCCEEEEEEECCCEEEEECCCCC
MATGWVKDKGLWYYLNESGSMATGWVKDKGLWYYLNESGSMATGWFTVSGKWYYTYNSGD
EEEEEEECCCEEEEECCCCCEEEEEEECCCEEEEECCCCCEEEEEEEECCEEEEEECCCC
LLVNTTTPDGYRVNANGEWVG
EEEECCCCCCEEECCCCCCCC
>Mature Secondary Structure
MKKTTILSLTTVAVILAAYVPNEPILADTPSSEVIKETKVGSIIQQNNIKYKVLTVEGNI
CCCEEEEHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHEECCCCEEEEEEEECCE
GTVQVGNGVTPVEFEAGQDGKPFTIPTKITVGDKVFTVTEVASQAFSYYPDETGRIVYYP
EEEEECCCCCCEEEECCCCCCCEEEEEEEEECCEEEEHHHHHHHHHHCCCCCCCEEEEEC
SSITIPSSIKKIQKKGFHGSKAKTIIFDKGSQLEKIEDRAFDFSELEEIELPASLEYIGT
CCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHCCCHHHHHHCCCCCCCHHHCC
SAFSFSQKLKKLTFSSSSKLELISHEAFANLSNLEKLTLPKSVKTLGSNLFRLTTSLKHV
CHHHHHHHHHHHHCCCCCCEEEEHHHHHHCHHCCHHHCCCHHHHHHHHHHEEEHHHHHEE
DVEEGNESFASVDGVLFSKDKTQLIYYPSQKNDESYKTPKETKELASYSFNKNSYLKKLE
ECCCCCCCHHHHCCEEEECCCEEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCHHEEEEH
LNEGLEKIGTFAFADAIKLEEISLPNSLETIERLAFYGNLELKELILPDNVKNFGKHVMN
HHHHHHHHCCHHHHCCEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHH
GLPKLKSLTIGNNINSLPSFFLSGVLDSLKEIHIKNKSTEFSVKKDTFAIPETVKFYVTS
CCCCCEEEEECCCCHHHHHHHHHHHHHHHHHEEECCCCCEEEEECCCCCCCCEEEEEEEH
EHIKDVLKSNLSTSNDIIVEKVDNIKQETDVAKPKKNSNQGVVGWVKDKGLWYYLNESGS
HHHHHHHHHCCCCCCCEEEEHHHHHHHHHHCCCCCCCCCCCEEEEEECCCEEEEECCCCC
MATGWVKDKGLWYYLNESGSMATGWVKDKGLWYYLNESGSMATGWVKDKGLWYYLNESGS
EEEEEEECCCEEEEECCCCCEEEEEEECCCEEEEECCCCCEEEEEEECCCEEEEECCCCC
MATGWVKDKGLWYYLNESGSMATGWVKDKGLWYYLNESGSMATGWFTVSGKWYYTYNSGD
EEEEEEECCCEEEEECCCCCEEEEEEECCCEEEEECCCCCEEEEEEEECCEEEEEECCCC
LLVNTTTPDGYRVNANGEWVG
EEEECCCCCCEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11463916 [H]