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The map label for this gene is yocD [H]

Identifier: 225858043

GI number: 225858043

Start: 215030

End: 216061

Strand: Reverse

Name: yocD [H]

Synonym: SP70585_0245

Alternate gene names: 225858043

Gene position: 216061-215030 (Counterclockwise)

Preceding gene: 225858044

Following gene: 225858039

Centisome position: 9.89

GC content: 41.67

Gene sequence:

>1032_bases
ATGGTTTCTACTATTGGTATTGTTAGTTTATCTAGTGGCATTATCGGAGAGGATTTTGTCAAACACGAAGTGGACTTGGG
TATCCAACGTCTCAAGGATCTGGGACTCAATCCCATCTTTTTGTCCCATTCGTTAAAAGGATTAGACTTTATCAAGGACC
ATCCTGAAGCTCGTGCAGAGGATTTGATTCATGCCTTTTCTGATGATAGCATCGACATGATCCTATGTGCCATCGGTGGA
GACGATACCTATCGCTTGCTACCTTATCTTTTTGAAAATGACCAACTCCAAAAGGTTATCAAGCAAAAAATTTTTCTTGG
CTTCTCGGATACAACCATGAACCACCTCATGTTGCATAAATTAGGAATCAAGACTTTTTATGGTCAATCCTTTTTAGCAG
ACATTTGTGAATTAGACAAAGAAATGCTAGCCTATAGCCTTCACTACTTTAAAGAATTGATTAAGACGGGAAGAATTTCA
GAAATCCGCCCTAGTGACGTTTGGTATGAGGAACGAACTGATTTTAGTCCCACGGCCCTGGGAACACCTCGTGTCAGTCA
TACAAATACAGGTTTTGACTTGTTGCAAGGAAGTGCTCAGTTCGAGGGAAAAATCCTCGGTGGTTGCCTCGAATCCCTCT
ACGATATCTTTGACAACTCTCGATACGCAGATAGCACGGAACTCTGCCAAAAATACAAACTTTTCCCTGACTTGTCAGAC
TGGGAAGGGAAAATCCTCTTGCTCGAAACAAGCGAAGAAAAGCCTAAGCCAGAAGACTTCAAAAAGATGTTGCTAACTTT
AAAGGACACTGGCATATTCGCGGTCATCAATGGACTCTTGGTCGGAAAACCTATGGATGAAACTTTCCATGACGACTATA
AAGAGGCACTATTGGATATCATTGACAGCAATATCCCGATTGTCTATAATCTGAATGTCGGCCACGCAACTCCAAGAGCA
ATTGTACCCTTTGGGGTCCATGCTCATGTAGATGCACAGGAACAAGTCATTCGCTTTGACTATAACAAATAA

Upstream 100 bases:

>100_bases
ATTTTCGAAGAGTATTAAAAGTATTCTTCTGAAATCCCACATAGCTTTCTCTTATATTTTGTGATAAAATAGGCTCAATC
TATTTCTAGGAGGATGAGAT

Downstream 100 bases:

>100_bases
AGCTGGGAAAAGTTTCTCAGCTTTTTTCTCGGTATCATTACTGGTATTTTCATCACATATTACAGCAAATTGAAACTAGA
ATAGTACACCTCTACTTCTA

Product: MccC family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 343; Mature: 343

Protein sequence:

>343_residues
MVSTIGIVSLSSGIIGEDFVKHEVDLGIQRLKDLGLNPIFLSHSLKGLDFIKDHPEARAEDLIHAFSDDSIDMILCAIGG
DDTYRLLPYLFENDQLQKVIKQKIFLGFSDTTMNHLMLHKLGIKTFYGQSFLADICELDKEMLAYSLHYFKELIKTGRIS
EIRPSDVWYEERTDFSPTALGTPRVSHTNTGFDLLQGSAQFEGKILGGCLESLYDIFDNSRYADSTELCQKYKLFPDLSD
WEGKILLLETSEEKPKPEDFKKMLLTLKDTGIFAVINGLLVGKPMDETFHDDYKEALLDIIDSNIPIVYNLNVGHATPRA
IVPFGVHAHVDAQEQVIRFDYNK

Sequences:

>Translated_343_residues
MVSTIGIVSLSSGIIGEDFVKHEVDLGIQRLKDLGLNPIFLSHSLKGLDFIKDHPEARAEDLIHAFSDDSIDMILCAIGG
DDTYRLLPYLFENDQLQKVIKQKIFLGFSDTTMNHLMLHKLGIKTFYGQSFLADICELDKEMLAYSLHYFKELIKTGRIS
EIRPSDVWYEERTDFSPTALGTPRVSHTNTGFDLLQGSAQFEGKILGGCLESLYDIFDNSRYADSTELCQKYKLFPDLSD
WEGKILLLETSEEKPKPEDFKKMLLTLKDTGIFAVINGLLVGKPMDETFHDDYKEALLDIIDSNIPIVYNLNVGHATPRA
IVPFGVHAHVDAQEQVIRFDYNK
>Mature_343_residues
MVSTIGIVSLSSGIIGEDFVKHEVDLGIQRLKDLGLNPIFLSHSLKGLDFIKDHPEARAEDLIHAFSDDSIDMILCAIGG
DDTYRLLPYLFENDQLQKVIKQKIFLGFSDTTMNHLMLHKLGIKTFYGQSFLADICELDKEMLAYSLHYFKELIKTGRIS
EIRPSDVWYEERTDFSPTALGTPRVSHTNTGFDLLQGSAQFEGKILGGCLESLYDIFDNSRYADSTELCQKYKLFPDLSD
WEGKILLLETSEEKPKPEDFKKMLLTLKDTGIFAVINGLLVGKPMDETFHDDYKEALLDIIDSNIPIVYNLNVGHATPRA
IVPFGVHAHVDAQEQVIRFDYNK

Specific function: Unknown

COG id: COG1619

COG function: function code V; Uncharacterized proteins, homologs of microcin C7 resistance protein MccF

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S66 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003507 [H]

Pfam domain/function: PF02016 Peptidase_S66 [H]

EC number: NA

Molecular weight: Translated: 38820; Mature: 38820

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSTIGIVSLSSGIIGEDFVKHEVDLGIQRLKDLGLNPIFLSHSLKGLDFIKDHPEARAE
CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHCCCCHHHH
DLIHAFSDDSIDMILCAIGGDDTYRLLPYLFENDQLQKVIKQKIFLGFSDTTMNHLMLHK
HHHHHHCCCCEEEEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
LGIKTFYGQSFLADICELDKEMLAYSLHYFKELIKTGRISEIRPSDVWYEERTDFSPTAL
HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
GTPRVSHTNTGFDLLQGSAQFEGKILGGCLESLYDIFDNSRYADSTELCQKYKLFPDLSD
CCCCCCCCCCCHHHHCCCCHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCC
WEGKILLLETSEEKPKPEDFKKMLLTLKDTGIFAVINGLLVGKPMDETFHDDYKEALLDI
CCCEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
IDSNIPIVYNLNVGHATPRAIVPFGVHAHVDAQEQVIRFDYNK
HCCCCCEEEEECCCCCCCCEEEECCCEECCCHHHHHEEECCCC
>Mature Secondary Structure
MVSTIGIVSLSSGIIGEDFVKHEVDLGIQRLKDLGLNPIFLSHSLKGLDFIKDHPEARAE
CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHCCCCHHHH
DLIHAFSDDSIDMILCAIGGDDTYRLLPYLFENDQLQKVIKQKIFLGFSDTTMNHLMLHK
HHHHHHCCCCEEEEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
LGIKTFYGQSFLADICELDKEMLAYSLHYFKELIKTGRISEIRPSDVWYEERTDFSPTAL
HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
GTPRVSHTNTGFDLLQGSAQFEGKILGGCLESLYDIFDNSRYADSTELCQKYKLFPDLSD
CCCCCCCCCCCHHHHCCCCHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCC
WEGKILLLETSEEKPKPEDFKKMLLTLKDTGIFAVINGLLVGKPMDETFHDDYKEALLDI
CCCEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
IDSNIPIVYNLNVGHATPRAIVPFGVHAHVDAQEQVIRFDYNK
HCCCCCEEEEECCCCCCCCEEEECCCEECCCHHHHHEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]