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The map label for this gene is yliC [C]

Identifier: 225686218

GI number: 225686218

Start: 371749

End: 372708

Strand: Reverse

Name: yliC [C]

Synonym: BMEA_B0386

Alternate gene names: 225686218

Gene position: 372708-371749 (Counterclockwise)

Preceding gene: 225686219

Following gene: 225686217

Centisome position: 31.44

GC content: 59.06

Gene sequence:

>960_bases
ATGCTCCGCTATTGCCTTCATCGCCTGCTCATAGGGCTCGGCATGTTGCTGGCGCTGACGATATTGATCTTCGTCCTGCT
GCAACTGACGCCCGGCGATCCGATCGATGCCTATATCAACCCCAATGTCGCCATGACCCAGGCGGAAATGGATGCATTGC
GGGCGCAGCTCGGCCTCGACCGGCCCCTGCCGGTGCAATATCTCGCTTGGCTTGGACAGGCCGTGCAGGGCAATCTCGGC
CATTCGCTTCAGCGTTTTAATGAAACTGTTTCGGGCCTCATCGCCTCGCGCATCGGGCCGACGCTTCTCCTGATGGCTGC
CGGCCTTGCCATTGCCATTGTGATCGGCGTCACAACCGGCATCATCAGTGCGGTGCGCCGCAATTCATTCCCCGACTATT
CCTTCTCGGTGCTGGCCCTGCTCGGTATTTCCAGCCCCGCTTTTCTCACCGCACTGCTCGGACTTTATGTCTTTTCCGTG
CGCCTCAAATGGGCGCCATCGGGCGGGATGCTAACCCCGGCGACGGATTTCTCCATACCCGACCTGCTGCGTCATCTGGC
GCTGCCAGCCCTCGTGCTTTCCATCGGCCATGCGGCACTCATCATGCGCTATATGCGCTCTTCCATGCTCGAAACGCTCA
ATCAGGACTATGTGCGCACGGCGCGCGCCAAGGGCGTGCGCGAATTCTGGGTTGTGGTGAAGCATACGTTGCGAAACGCC
ATGCTGCCGGTCGTAACGCTTATTGGCTCCACCATCGGCCTTGCGGTTGGCGGCGCCATCTTCATCGAGAGCGTCTTCAA
CTGGCCCGGCATGGGACTTCTGCTCATCAATGCAGTCGAAACCCGCGACTATCCGGTCATCATGGGCGCAACGCTTGTGA
TTGGCGCCTGTGTCATCATCGTCAATATCCTGACCGATCTGGCCTATGCGGTCATCGATCCACGCATCAAGGTTACGTAA

Upstream 100 bases:

>100_bases
ACCGGGCCGCGCCTGCAACCAGCCAAAGCGGACGGCGTCTCATGCAGACACTGTCCCGGCTCCTTCTACCCAAACACCAA
CGACAGGCTGTAGAAACTTC

Downstream 100 bases:

>100_bases
GATGGGCCAGTCCATTCCCGCTTCCACAGGGCCGATGGCCCGTTCCGCGAACCGCTTTTTACAGAACCGCGCCGCGATAT
TCGGCCTTGTCCTGCTGACG

Product: permease component of ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 319

Protein sequence:

>319_residues
MLRYCLHRLLIGLGMLLALTILIFVLLQLTPGDPIDAYINPNVAMTQAEMDALRAQLGLDRPLPVQYLAWLGQAVQGNLG
HSLQRFNETVSGLIASRIGPTLLLMAAGLAIAIVIGVTTGIISAVRRNSFPDYSFSVLALLGISSPAFLTALLGLYVFSV
RLKWAPSGGMLTPATDFSIPDLLRHLALPALVLSIGHAALIMRYMRSSMLETLNQDYVRTARAKGVREFWVVVKHTLRNA
MLPVVTLIGSTIGLAVGGAIFIESVFNWPGMGLLLINAVETRDYPVIMGATLVIGACVIIVNILTDLAYAVIDPRIKVT

Sequences:

>Translated_319_residues
MLRYCLHRLLIGLGMLLALTILIFVLLQLTPGDPIDAYINPNVAMTQAEMDALRAQLGLDRPLPVQYLAWLGQAVQGNLG
HSLQRFNETVSGLIASRIGPTLLLMAAGLAIAIVIGVTTGIISAVRRNSFPDYSFSVLALLGISSPAFLTALLGLYVFSV
RLKWAPSGGMLTPATDFSIPDLLRHLALPALVLSIGHAALIMRYMRSSMLETLNQDYVRTARAKGVREFWVVVKHTLRNA
MLPVVTLIGSTIGLAVGGAIFIESVFNWPGMGLLLINAVETRDYPVIMGATLVIGACVIIVNILTDLAYAVIDPRIKVT
>Mature_319_residues
MLRYCLHRLLIGLGMLLALTILIFVLLQLTPGDPIDAYINPNVAMTQAEMDALRAQLGLDRPLPVQYLAWLGQAVQGNLG
HSLQRFNETVSGLIASRIGPTLLLMAAGLAIAIVIGVTTGIISAVRRNSFPDYSFSVLALLGISSPAFLTALLGLYVFSV
RLKWAPSGGMLTPATDFSIPDLLRHLALPALVLSIGHAALIMRYMRSSMLETLNQDYVRTARAKGVREFWVVVKHTLRNA
MLPVVTLIGSTIGLAVGGAIFIESVFNWPGMGLLLINAVETRDYPVIMGATLVIGACVIIVNILTDLAYAVIDPRIKVT

Specific function: Probably part of an ABC transporter complex that could be involved in peptide import. Probably responsible for the translocation of the substrate across the membrane

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain

Homologues:

Organism=Escherichia coli, GI1787053, Length=317, Percent_Identity=42.5867507886435, Blast_Score=246, Evalue=1e-66,
Organism=Escherichia coli, GI1789965, Length=338, Percent_Identity=36.6863905325444, Blast_Score=207, Evalue=6e-55,
Organism=Escherichia coli, GI1789888, Length=318, Percent_Identity=35.8490566037736, Blast_Score=191, Evalue=6e-50,
Organism=Escherichia coli, GI1787497, Length=319, Percent_Identity=33.5423197492163, Blast_Score=189, Evalue=2e-49,
Organism=Escherichia coli, GI1787761, Length=318, Percent_Identity=35.8490566037736, Blast_Score=164, Evalue=9e-42,
Organism=Escherichia coli, GI1787550, Length=235, Percent_Identity=32.3404255319149, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI1788504, Length=359, Percent_Identity=28.6908077994429, Blast_Score=125, Evalue=3e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y2551_BRUO2 (A5VU90)

Other databases:

- EMBL:   CP000709
- RefSeq:   YP_001257395.1
- GeneID:   5203296
- GenomeReviews:   CP000709_GR
- KEGG:   bov:BOV_A0351
- TIGR:   BOV_A0351
- HOGENOM:   HBG724229
- OMA:   WMPSGGM
- ProtClustDB:   CLSK898970
- InterPro:   IPR000515

Pfam domain/function: PF00528 BPD_transp_1

EC number: NA

Molecular weight: Translated: 34427; Mature: 34427

Theoretical pI: Translated: 9.56; Mature: 9.56

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x1fb22cb0)-; HASH(0x20577378)-; HASH(0x1b3c6c70)-; HASH(0x202bd42c)-; HASH(0x202a7e2c)-; HASH(0x1ff13ec8)-;

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRYCLHRLLIGLGMLLALTILIFVLLQLTPGDPIDAYINPNVAMTQAEMDALRAQLGLD
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCHHHHHHHHHHHHHHCCC
RPLPVQYLAWLGQAVQGNLGHSLQRFNETVSGLIASRIGPTLLLMAAGLAIAIVIGVTTG
CCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IISAVRRNSFPDYSFSVLALLGISSPAFLTALLGLYVFSVRLKWAPSGGMLTPATDFSIP
HHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCHH
DLLRHLALPALVLSIGHAALIMRYMRSSMLETLNQDYVRTARAKGVREFWVVVKHTLRNA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MLPVVTLIGSTIGLAVGGAIFIESVFNWPGMGLLLINAVETRDYPVIMGATLVIGACVII
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCHHHHHHHHHHHHHHH
VNILTDLAYAVIDPRIKVT
HHHHHHHHHHHHCCCEECH
>Mature Secondary Structure
MLRYCLHRLLIGLGMLLALTILIFVLLQLTPGDPIDAYINPNVAMTQAEMDALRAQLGLD
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCHHHHHHHHHHHHHHCCC
RPLPVQYLAWLGQAVQGNLGHSLQRFNETVSGLIASRIGPTLLLMAAGLAIAIVIGVTTG
CCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IISAVRRNSFPDYSFSVLALLGISSPAFLTALLGLYVFSVRLKWAPSGGMLTPATDFSIP
HHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCHH
DLLRHLALPALVLSIGHAALIMRYMRSSMLETLNQDYVRTARAKGVREFWVVVKHTLRNA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MLPVVTLIGSTIGLAVGGAIFIESVFNWPGMGLLLINAVETRDYPVIMGATLVIGACVII
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCHHHHHHHHHHHHHHH
VNILTDLAYAVIDPRIKVT
HHHHHHHHHHHHCCCEECH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA