Definition | Brucella melitensis ATCC 23457 chromosome chromosome II, complete sequence. |
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Accession | NC_012442 |
Length | 1,185,518 |
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The map label for this gene is fumC
Identifier: 225686047
GI number: 225686047
Start: 176464
End: 177855
Strand: Reverse
Name: fumC
Synonym: BMEA_B0192
Alternate gene names: 225686047
Gene position: 177855-176464 (Counterclockwise)
Preceding gene: 225686048
Following gene: 225686046
Centisome position: 15.0
GC content: 59.77
Gene sequence:
>1392_bases ATGGCCGCCACGCGTACCGAAACAGACACTTTCGGACCGATCGATGTTCCCGCAGACCGTTATTGGGGCGCACAGACACA GCGTTCCCTGCAAAATTTCAGGATCGGCGGCGAGCGCATGCCCCTGCCCCTGGTTCACGCGCTGGGCGTGGTAAAGCGCG CGGCGGCGGAAACCAATATCGCGCTCGGCAAGCTTGATCCCGTCCTGGGTCAGGTGATTGCGGTTGCCGCTTCCGAAGTC ATTGAGGGCAAGCTCGACGACCATTTCCCGCTCGTAGTCTGGCAGACAGGCTCCGGCACGCAATCGAACATGAATGCCAA TGAAGTGATCTCGAACCGGGCTATCGAGTTGCTCGGCGGGGAAATGGGCTCCAAAAAGCCGATCCACCCGAACGACCATG TCAATATGAGCCAGTCTTCCAATGACAGTTTCCCGACGGCGATCCACATCGCCACGGCGGTCGAAACCGTCAACCGGCTC TATCCCGCGCTCGAACACCTCACCAAAGCCCTGAAGGTCAAGGAAGAAGCATTCAAGGACATCATCAAGATTGGCCGCAC CCACACGCAGGACGCAACACCTGTGACGCTGGGGCAGGAATTTTCGGGCTACCGCGCGGCACTTGAATATGCCCGCCATC GGCTCGAACAATCGCTTGCCGACGTCTTCCTGCTGGCGCAGGGCGGCACGGCTGTCGGCACCGGTCTCAACGCACCTGTC GGTTTCGACAAGGGCTTTGCCGAAGCGGTGAGCGAGATTACCGGGCTTTCCTTCAAGACCGCGCCAAACAAGTTCGAGGC GCTGGCAAGCCACGGCGCCGTTCTCAACTTCCACGGCAGCCTGAATGCGCTTGCAGCCGATCTCTTCAAGATCGCCAACG ATATCCGGTTTCTCGGTTCCGGCCCGCGTTCCGGCCTTGGCGAGCTTTCTCTGCCGGAAAACGAACCCGGCTCCTCCATC ATGCCGGGCAAGGTCAACCCCACACAGGCCGAAGCCATGACCATGGTGGCAACCCAGGTTTTCGGCAACCAGACCGCCGT AACCGTCGCCGCCAGCCAGGGGCATTTCGAGCTGAACGTCTTCAAACCGGTCATTGCCTATAATGTGCTGCAATCGATCC GGCTTTTGAGCGACACCATGGTTTCCTTTGCCGATCATTGCGTCGAGGGGATTGAACCCAATACGGCCCGCATCAAGGAA TTGCTGGAACGCTCGCTCATGCTCGTCACGGCGCTTGCGCCTGCCATCGGCTATGACAATGCGGCCAGGATCGCCAAAAC CGCCCATAAGAACGGCACCACGCTTCGCGAGGAAGCATTGGCAAGCGGCCTCGTATCGGAAGAAGATTATGACCGGCTGG TGCGCGCCGAGCGGATGATCGCCCCACAATGA
Upstream 100 bases:
>100_bases TCATGTGTTCATCAATTAAACGTTTTGCCCGCCAGCAATCTGGCAGTGCTATAGAATGCGAAAAGGGCTCGTCCGAGCCT CAGCCAGCCGGAGACATGAA
Downstream 100 bases:
>100_bases ATTGCACGCAAATAGTGAACAAACTGTCGAGAATTAAGCATCTTTTCTTGACAATTACGAATCGCTAATTGATGGATCAA TTCAACAGGAGAAAGCCCAC
Product: fumarate hydratase
Products: NA
Alternate protein names: Fumarase C
Number of amino acids: Translated: 463; Mature: 462
Protein sequence:
>463_residues MAATRTETDTFGPIDVPADRYWGAQTQRSLQNFRIGGERMPLPLVHALGVVKRAAAETNIALGKLDPVLGQVIAVAASEV IEGKLDDHFPLVVWQTGSGTQSNMNANEVISNRAIELLGGEMGSKKPIHPNDHVNMSQSSNDSFPTAIHIATAVETVNRL YPALEHLTKALKVKEEAFKDIIKIGRTHTQDATPVTLGQEFSGYRAALEYARHRLEQSLADVFLLAQGGTAVGTGLNAPV GFDKGFAEAVSEITGLSFKTAPNKFEALASHGAVLNFHGSLNALAADLFKIANDIRFLGSGPRSGLGELSLPENEPGSSI MPGKVNPTQAEAMTMVATQVFGNQTAVTVAASQGHFELNVFKPVIAYNVLQSIRLLSDTMVSFADHCVEGIEPNTARIKE LLERSLMLVTALAPAIGYDNAARIAKTAHKNGTTLREEALASGLVSEEDYDRLVRAERMIAPQ
Sequences:
>Translated_463_residues MAATRTETDTFGPIDVPADRYWGAQTQRSLQNFRIGGERMPLPLVHALGVVKRAAAETNIALGKLDPVLGQVIAVAASEV IEGKLDDHFPLVVWQTGSGTQSNMNANEVISNRAIELLGGEMGSKKPIHPNDHVNMSQSSNDSFPTAIHIATAVETVNRL YPALEHLTKALKVKEEAFKDIIKIGRTHTQDATPVTLGQEFSGYRAALEYARHRLEQSLADVFLLAQGGTAVGTGLNAPV GFDKGFAEAVSEITGLSFKTAPNKFEALASHGAVLNFHGSLNALAADLFKIANDIRFLGSGPRSGLGELSLPENEPGSSI MPGKVNPTQAEAMTMVATQVFGNQTAVTVAASQGHFELNVFKPVIAYNVLQSIRLLSDTMVSFADHCVEGIEPNTARIKE LLERSLMLVTALAPAIGYDNAARIAKTAHKNGTTLREEALASGLVSEEDYDRLVRAERMIAPQ >Mature_462_residues AATRTETDTFGPIDVPADRYWGAQTQRSLQNFRIGGERMPLPLVHALGVVKRAAAETNIALGKLDPVLGQVIAVAASEVI EGKLDDHFPLVVWQTGSGTQSNMNANEVISNRAIELLGGEMGSKKPIHPNDHVNMSQSSNDSFPTAIHIATAVETVNRLY PALEHLTKALKVKEEAFKDIIKIGRTHTQDATPVTLGQEFSGYRAALEYARHRLEQSLADVFLLAQGGTAVGTGLNAPVG FDKGFAEAVSEITGLSFKTAPNKFEALASHGAVLNFHGSLNALAADLFKIANDIRFLGSGPRSGLGELSLPENEPGSSIM PGKVNPTQAEAMTMVATQVFGNQTAVTVAASQGHFELNVFKPVIAYNVLQSIRLLSDTMVSFADHCVEGIEPNTARIKEL LERSLMLVTALAPAIGYDNAARIAKTAHKNGTTLREEALASGLVSEEDYDRLVRAERMIAPQ
Specific function: Tricarboxylic acid cycle [C]
COG id: COG0114
COG function: function code C; Fumarase
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II fumarase/aspartase family. Fumarase subfamily
Homologues:
Organism=Homo sapiens, GI19743875, Length=461, Percent_Identity=63.7744034707158, Blast_Score=596, Evalue=1e-170, Organism=Homo sapiens, GI266458395, Length=66, Percent_Identity=54.5454545454545, Blast_Score=77, Evalue=5e-14, Organism=Escherichia coli, GI1787896, Length=460, Percent_Identity=58.2608695652174, Blast_Score=532, Evalue=1e-152, Organism=Escherichia coli, GI87082375, Length=461, Percent_Identity=37.7440347071584, Blast_Score=318, Evalue=5e-88, Organism=Caenorhabditis elegans, GI17553882, Length=465, Percent_Identity=65.8064516129032, Blast_Score=629, Evalue=1e-180, Organism=Caenorhabditis elegans, GI32565146, Length=328, Percent_Identity=64.9390243902439, Blast_Score=432, Evalue=1e-121, Organism=Saccharomyces cerevisiae, GI6324993, Length=461, Percent_Identity=63.9913232104121, Blast_Score=604, Evalue=1e-174, Organism=Drosophila melanogaster, GI24640179, Length=462, Percent_Identity=64.2857142857143, Blast_Score=607, Evalue=1e-174, Organism=Drosophila melanogaster, GI24640177, Length=462, Percent_Identity=64.2857142857143, Blast_Score=606, Evalue=1e-173, Organism=Drosophila melanogaster, GI24662684, Length=463, Percent_Identity=61.3390928725702, Blast_Score=579, Evalue=1e-165, Organism=Drosophila melanogaster, GI78710009, Length=463, Percent_Identity=60.9071274298056, Blast_Score=578, Evalue=1e-165, Organism=Drosophila melanogaster, GI24583245, Length=464, Percent_Identity=53.2327586206897, Blast_Score=508, Evalue=1e-144,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): FUMC_BRUME (Q8YB50)
Other databases:
- EMBL: AE008918 - PIR: AB3641 - RefSeq: NP_542029.2 - ProteinModelPortal: Q8YB50 - SMR: Q8YB50 - GeneID: 1198823 - GenomeReviews: AE008918_GR - KEGG: bme:BMEII1051 - HOGENOM: HBG284369 - OMA: RIEKDTM - PhylomeDB: Q8YB50 - ProtClustDB: PRK00485 - BioCyc: BMEL224914:BMEII1051-MONOMER - BRENDA: 4.2.1.2 - HAMAP: MF_00743 - InterPro: IPR003031 - InterPro: IPR005677 - InterPro: IPR018951 - InterPro: IPR000362 - InterPro: IPR020557 - InterPro: IPR008948 - InterPro: IPR022761 - PRINTS: PR00145 - PRINTS: PR00149 - TIGRFAMs: TIGR00979
Pfam domain/function: PF10415 FumaraseC_C; PF00206 Lyase_1; SSF48557 L-Aspartase-like
EC number: =4.2.1.2
Molecular weight: Translated: 49625; Mature: 49494
Theoretical pI: Translated: 6.06; Mature: 6.06
Prosite motif: PS00163 FUMARATE_LYASES
Important sites: BINDING 100-100
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAATRTETDTFGPIDVPADRYWGAQTQRSLQNFRIGGERMPLPLVHALGVVKRAAAETNI CCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCC ALGKLDPVLGQVIAVAASEVIEGKLDDHFPLVVWQTGSGTQSNMNANEVISNRAIELLGG CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCC EMGSKKPIHPNDHVNMSQSSNDSFPTAIHIATAVETVNRLYPALEHLTKALKVKEEAFKD CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IIKIGRTHTQDATPVTLGQEFSGYRAALEYARHRLEQSLADVFLLAQGGTAVGTGLNAPV HHHHCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCEECCCCCCCC GFDKGFAEAVSEITGLSFKTAPNKFEALASHGAVLNFHGSLNALAADLFKIANDIRFLGS CCCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHCC GPRSGLGELSLPENEPGSSIMPGKVNPTQAEAMTMVATQVFGNQTAVTVAASQGHFELNV CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEH FKPVIAYNVLQSIRLLSDTMVSFADHCVEGIEPNTARIKELLERSLMLVTALAPAIGYDN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC AARIAKTAHKNGTTLREEALASGLVSEEDYDRLVRAERMIAPQ HHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC >Mature Secondary Structure AATRTETDTFGPIDVPADRYWGAQTQRSLQNFRIGGERMPLPLVHALGVVKRAAAETNI CCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCC ALGKLDPVLGQVIAVAASEVIEGKLDDHFPLVVWQTGSGTQSNMNANEVISNRAIELLGG CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCC EMGSKKPIHPNDHVNMSQSSNDSFPTAIHIATAVETVNRLYPALEHLTKALKVKEEAFKD CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IIKIGRTHTQDATPVTLGQEFSGYRAALEYARHRLEQSLADVFLLAQGGTAVGTGLNAPV HHHHCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCEECCCCCCCC GFDKGFAEAVSEITGLSFKTAPNKFEALASHGAVLNFHGSLNALAADLFKIANDIRFLGS CCCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHCC GPRSGLGELSLPENEPGSSIMPGKVNPTQAEAMTMVATQVFGNQTAVTVAASQGHFELNV CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEH FKPVIAYNVLQSIRLLSDTMVSFADHCVEGIEPNTARIKELLERSLMLVTALAPAIGYDN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC AARIAKTAHKNGTTLREEALASGLVSEEDYDRLVRAERMIAPQ HHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11756688