Definition | Brucella melitensis ATCC 23457 chromosome chromosome II, complete sequence. |
---|---|
Accession | NC_012442 |
Length | 1,185,518 |
Click here to switch to the map view.
The map label for this gene is ygbJ [C]
Identifier: 225686007
GI number: 225686007
Start: 141121
End: 142029
Strand: Reverse
Name: ygbJ [C]
Synonym: BMEA_B0150
Alternate gene names: 225686007
Gene position: 142029-141121 (Counterclockwise)
Preceding gene: 225686021
Following gene: 225686006
Centisome position: 11.98
GC content: 56.0
Gene sequence:
>909_bases GTGATTATGGTGTCTTCAGATTACAGCGTATGTATCGTGGGCCTCGGCTCAATGGGTATGGGCGTCGCCCAATCCTGTAT CGCGGCCGGTCTTCGCACCTATGGCATCGATCTTGATCCGGCCAAATGTGAGGCGATCATAAAGGCGGGCGCAATTGGCG CTTCATCGCGGTGCGAAGCGGCAGGAAAACTGGATGCCCTGGTTCTGCTTGTGGTGAATGCCGCACAATGCAAGGCGGTG CTGTTTGGAGAAAATGGCCTTGCCGCTCAAATGAAACCCGGCGCCGCCGTGATGGTTTCATCAACCATCTCAGCCGCCGA TGCCAAGGAGATTGCGGCAGCACTCGAAGCCTATAATCTTCTGATGCTGGATGCGCCTGTTTCCGGCGGCGCGGCAAAAG CGGCAAGCGGGGATATCACGGTTATGGCTTCCGGTTCGCGCGAAGCTTTCGAGAAATTGCGCCCCGTGCTCAATGCCGCC GCTGGCAAGGTTTACGAGATCGGCCAGGAAATCGGGCTGGGAGCAACCGTCAAGATCATCCATCAATTGCTGGCAGGCGT ACATATTGCAGCCGGTGCAGAAGCAATGGCGCTTGCCGCCCGTTCCGGCATTCCGCTCGACATCATGTATGACGTGGTTA CACATGCGGCTGGCAATAGCTGGATGTTTGAAAACCGCATGAAACATGTGGTGGATGGCGATTATACGCCCAAATCCGCC GTCGATATTTTTGTCAAGGATCTGCGCCTGGTGACGGAAACCGGGCTTTCCATGAACTTCCCGCTGCCGCTTGCAACAAC GGCCTACAGCCTGTTCGCCAATGCCTCGAATGCCGGCTTTGGCAAAGAAGATGATGCCGCCGTTATCAAGACATATGCCG GCATCAAACTTCCCGACAGGAGTGCATGA
Upstream 100 bases:
>100_bases CGTACCATATTTTAACATATATCGCTTTTTTATGAGAATTTTTGATAAAATATGTTCATAATCGAATTGTTTTATTATAT GATCCTCATAAACGCACGGA
Downstream 100 bases:
>100_bases CATGCGCCTTGGCGTCATTGCAGACGATTTTACCGGAGCAACCGATATCGCAGGATTTCTGGTTGGCAACGGCCTGCGCA CCATTCAGCTGAATGGCGTT
Product: 2-hydroxy-3-oxopropionate reductase
Products: acetoacetate; NADH; H+
Alternate protein names: NA
Number of amino acids: Translated: 302; Mature: 302
Protein sequence:
>302_residues MIMVSSDYSVCIVGLGSMGMGVAQSCIAAGLRTYGIDLDPAKCEAIIKAGAIGASSRCEAAGKLDALVLLVVNAAQCKAV LFGENGLAAQMKPGAAVMVSSTISAADAKEIAAALEAYNLLMLDAPVSGGAAKAASGDITVMASGSREAFEKLRPVLNAA AGKVYEIGQEIGLGATVKIIHQLLAGVHIAAGAEAMALAARSGIPLDIMYDVVTHAAGNSWMFENRMKHVVDGDYTPKSA VDIFVKDLRLVTETGLSMNFPLPLATTAYSLFANASNAGFGKEDDAAVIKTYAGIKLPDRSA
Sequences:
>Translated_302_residues MIMVSSDYSVCIVGLGSMGMGVAQSCIAAGLRTYGIDLDPAKCEAIIKAGAIGASSRCEAAGKLDALVLLVVNAAQCKAV LFGENGLAAQMKPGAAVMVSSTISAADAKEIAAALEAYNLLMLDAPVSGGAAKAASGDITVMASGSREAFEKLRPVLNAA AGKVYEIGQEIGLGATVKIIHQLLAGVHIAAGAEAMALAARSGIPLDIMYDVVTHAAGNSWMFENRMKHVVDGDYTPKSA VDIFVKDLRLVTETGLSMNFPLPLATTAYSLFANASNAGFGKEDDAAVIKTYAGIKLPDRSA >Mature_302_residues MIMVSSDYSVCIVGLGSMGMGVAQSCIAAGLRTYGIDLDPAKCEAIIKAGAIGASSRCEAAGKLDALVLLVVNAAQCKAV LFGENGLAAQMKPGAAVMVSSTISAADAKEIAAALEAYNLLMLDAPVSGGAAKAASGDITVMASGSREAFEKLRPVLNAA AGKVYEIGQEIGLGATVKIIHQLLAGVHIAAGAEAMALAARSGIPLDIMYDVVTHAAGNSWMFENRMKHVVDGDYTPKSA VDIFVKDLRLVTETGLSMNFPLPLATTAYSLFANASNAGFGKEDDAAVIKTYAGIKLPDRSA
Specific function: Unknown
COG id: COG2084
COG function: function code I; 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the 3-hydroxyisobutyrate dehydrogenase family [H]
Homologues:
Organism=Homo sapiens, GI23308751, Length=294, Percent_Identity=27.891156462585, Blast_Score=114, Evalue=8e-26, Organism=Homo sapiens, GI40556376, Length=290, Percent_Identity=24.1379310344828, Blast_Score=101, Evalue=9e-22, Organism=Escherichia coli, GI1789092, Length=294, Percent_Identity=70.0680272108844, Blast_Score=382, Evalue=1e-107, Organism=Escherichia coli, GI145693186, Length=283, Percent_Identity=31.8021201413428, Blast_Score=142, Evalue=2e-35, Organism=Escherichia coli, GI1790315, Length=283, Percent_Identity=26.8551236749117, Blast_Score=116, Evalue=2e-27, Organism=Escherichia coli, GI1786719, Length=279, Percent_Identity=25.089605734767, Blast_Score=99, Evalue=3e-22, Organism=Caenorhabditis elegans, GI17557316, Length=269, Percent_Identity=25.2788104089219, Blast_Score=81, Evalue=9e-16, Organism=Drosophila melanogaster, GI28574115, Length=289, Percent_Identity=25.9515570934256, Blast_Score=101, Evalue=6e-22, Organism=Drosophila melanogaster, GI24655230, Length=287, Percent_Identity=25.4355400696864, Blast_Score=96, Evalue=4e-20, Organism=Drosophila melanogaster, GI19922568, Length=287, Percent_Identity=25.4355400696864, Blast_Score=96, Evalue=4e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002204 - InterPro: IPR015815 - InterPro: IPR008927 - InterPro: IPR006115 - InterPro: IPR013328 - InterPro: IPR016040 [H]
Pfam domain/function: PF03446 NAD_binding_2 [H]
EC number: 1.1.1.30
Molecular weight: Translated: 30945; Mature: 30945
Theoretical pI: Translated: 5.35; Mature: 5.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 6.0 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 6.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIMVSSDYSVCIVGLGSMGMGVAQSCIAAGLRTYGIDLDPAKCEAIIKAGAIGASSRCEA CEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCC AGKLDALVLLVVNAAQCKAVLFGENGLAAQMKPGAAVMVSSTISAADAKEIAAALEAYNL CCCHHEEEHEEECHHHEEEEEECCCCCEEEECCCEEEEEECCCCHHHHHHHHHHHHHHEE LMLDAPVSGGAAKAASGDITVMASGSREAFEKLRPVLNAAAGKVYEIGQEIGLGATVKII EEEECCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHH HQLLAGVHIAAGAEAMALAARSGIPLDIMYDVVTHAAGNSWMFENRMKHVVDGDYTPKSA HHHHHCCCHHCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCEEHHHHHHHHHCCCCCCHHH VDIFVKDLRLVTETGLSMNFPLPLATTAYSLFANASNAGFGKEDDAAVIKTYAGIKLPDR HHHHHHHHHHHHHCCCEECCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCC SA CC >Mature Secondary Structure MIMVSSDYSVCIVGLGSMGMGVAQSCIAAGLRTYGIDLDPAKCEAIIKAGAIGASSRCEA CEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCC AGKLDALVLLVVNAAQCKAVLFGENGLAAQMKPGAAVMVSSTISAADAKEIAAALEAYNL CCCHHEEEHEEECHHHEEEEEECCCCCEEEECCCEEEEEECCCCHHHHHHHHHHHHHHEE LMLDAPVSGGAAKAASGDITVMASGSREAFEKLRPVLNAAAGKVYEIGQEIGLGATVKII EEEECCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHH HQLLAGVHIAAGAEAMALAARSGIPLDIMYDVVTHAAGNSWMFENRMKHVVDGDYTPKSA HHHHHCCCHHCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCEEHHHHHHHHHCCCCCCHHH VDIFVKDLRLVTETGLSMNFPLPLATTAYSLFANASNAGFGKEDDAAVIKTYAGIKLPDR HHHHHHHHHHHHHCCCEECCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCC SA CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: (R)-3-hydroxybutanoate; NAD+
Specific reaction: (R)-3-hydroxybutanoate + NAD+ = acetoacetate + NADH + H+
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]