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The map label for this gene is vjbR

Identifier: 225685981

GI number: 225685981

Start: 118359

End: 119138

Strand: Direct

Name: vjbR

Synonym: BMEA_B0122

Alternate gene names: 225685981

Gene position: 118359-119138 (Clockwise)

Preceding gene: 225685980

Following gene: 225685988

Centisome position: 9.98

GC content: 53.33

Gene sequence:

>780_bases
ATGAGTCTTGATCTCGTTCATTTTCCGAATTACAAAAAAACCTTTTTTGGTTCTTCCTTTCAAAGCGATACTTTGGCGCT
TCTAACCCGCATCCGGGATGAAATAGGATGCCGCTACGTAACGCATACCTATCGTGGTCGCGTAGGCGACTGCACGAAGG
TGAATTCAGCCGATCTGACTGTTCTTATGACGCTGCCTGCTACCTGGGTCGCGCGCTATTCCTCGAAAAACTACTTTGCC
ATTGACCCGGTTTTTCAGGAAGACGCTCCGTATTACCGCAATGATACGAGCGCCATTGCCCGCGACCTGAAAGAAGATGC
GGATATTTGCCCGGCCGTTGCCGAACTGTTGCATGATGCTGAAAAGCACGGCCTGGGAAATCTTTTCATCGCCGTATCCG
CGCGCAATCCCAAGGGCGTTGCGGGTTGTACGGTTTTCACTTTCGAGGTGGAGGACGAAGACCGTACGCAATTCCTTGCC
AGGATGCGCCCGCGCCTTCTAAGCCTTGCCGGCATCATTCATGGAACTGTCTGCGGCTGCAAGGATGCAAATTCAGTTGC
AAGCCTTCTCACCCCGCGCGAGGTCGATTGCCTGCGCTGGGCTGCCAATGGCAAGACTGATGGCGAAATCGCCGAAATCC
TCAGCATCGCCCGCTGGACGGTGGTGACTTATCTACAGAATGCCAAAATCAAGCTGAACTGTTCCAATCGAACGTCGGCA
GTGGCGACGGCGCTTTCCCTCGGCATTATCGATATGCCCGAGGTACAGCATCTCGTCTGA

Upstream 100 bases:

>100_bases
TAAGCGATTGACGGCCTCTGAGGGGAGGCGATTCTCTCGCAAGCAGTTATAGAGATACCAGAGCGAAGCCCGCATGGTTT
CATCACCAAGGATATTTCCA

Downstream 100 bases:

>100_bases
TCAACATGGTCGCGCGGAAACCTTCCGCGCGACGCCGTAGCAGGCGAAAAGAAAAGCTCAGACGCGTTTCAGGCGCGTTT
GCGCAGGGGCAACCGGGCAT

Product: regulatory protein LuxR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 258

Protein sequence:

>259_residues
MSLDLVHFPNYKKTFFGSSFQSDTLALLTRIRDEIGCRYVTHTYRGRVGDCTKVNSADLTVLMTLPATWVARYSSKNYFA
IDPVFQEDAPYYRNDTSAIARDLKEDADICPAVAELLHDAEKHGLGNLFIAVSARNPKGVAGCTVFTFEVEDEDRTQFLA
RMRPRLLSLAGIIHGTVCGCKDANSVASLLTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSA
VATALSLGIIDMPEVQHLV

Sequences:

>Translated_259_residues
MSLDLVHFPNYKKTFFGSSFQSDTLALLTRIRDEIGCRYVTHTYRGRVGDCTKVNSADLTVLMTLPATWVARYSSKNYFA
IDPVFQEDAPYYRNDTSAIARDLKEDADICPAVAELLHDAEKHGLGNLFIAVSARNPKGVAGCTVFTFEVEDEDRTQFLA
RMRPRLLSLAGIIHGTVCGCKDANSVASLLTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSA
VATALSLGIIDMPEVQHLV
>Mature_258_residues
SLDLVHFPNYKKTFFGSSFQSDTLALLTRIRDEIGCRYVTHTYRGRVGDCTKVNSADLTVLMTLPATWVARYSSKNYFAI
DPVFQEDAPYYRNDTSAIARDLKEDADICPAVAELLHDAEKHGLGNLFIAVSARNPKGVAGCTVFTFEVEDEDRTQFLAR
MRPRLLSLAGIIHGTVCGCKDANSVASLLTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAV
ATALSLGIIDMPEVQHLV

Specific function: Transcriptional regulator mediating the effects of the quorum sensing autoinducer C12-HSL (N-dodecanoyl-homoserine lactone)

COG id: COG2771

COG function: function code K; DNA-binding HTH domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain

Homologues:

Organism=Escherichia coli, GI1788224, Length=191, Percent_Identity=28.2722513089005, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): VJBR_BRUA2 (Q2YJ50)

Other databases:

- EMBL:   AM040265
- RefSeq:   YP_418357.1
- ProteinModelPortal:   Q2YJ50
- STRING:   Q2YJ50
- GeneID:   3828180
- GenomeReviews:   AM040265_GR
- KEGG:   bmf:BAB2_0118
- eggNOG:   COG2771
- HOGENOM:   HBG366001
- OMA:   ITIRERE
- ProtClustDB:   CLSK899077
- BioCyc:   BMEL359391:BAB2_0118-MONOMER
- GO:   GO:0005622
- InterPro:   IPR016032
- InterPro:   IPR005143
- InterPro:   IPR000792
- InterPro:   IPR011991
- Gene3D:   G3DSA:3.30.450.80
- Gene3D:   G3DSA:1.10.10.10
- PRINTS:   PR00038
- SMART:   SM00421

Pfam domain/function: PF03472 Autoind_bind; PF00196 GerE; SSF46894 Bipartite_resp_reg_C-effector; SSF75516 TF_LuxR_autoind-bd_dom

EC number: NA

Molecular weight: Translated: 28625; Mature: 28494

Theoretical pI: Translated: 6.77; Mature: 6.77

Prosite motif: PS00622 HTH_LUXR_1; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLDLVHFPNYKKTFFGSSFQSDTLALLTRIRDEIGCRYVTHTYRGRVGDCTKVNSADLT
CCCEEEECCCCCHHHCCCCCCHHHHHHHHHHHHHHCCEEEEHHHCCCCCCCCCCCCCCEE
VLMTLPATWVARYSSKNYFAIDPVFQEDAPYYRNDTSAIARDLKEDADICPAVAELLHDA
EEEECCHHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
EKHGLGNLFIAVSARNPKGVAGCTVFTFEVEDEDRTQFLARMRPRLLSLAGIIHGTVCGC
HHCCCCEEEEEEECCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
KDANSVASLLTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSA
CCHHHHHHHCCCCHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHH
VATALSLGIIDMPEVQHLV
HHHHHHHCCCCCCHHHHCC
>Mature Secondary Structure 
SLDLVHFPNYKKTFFGSSFQSDTLALLTRIRDEIGCRYVTHTYRGRVGDCTKVNSADLT
CCEEEECCCCCHHHCCCCCCHHHHHHHHHHHHHHCCEEEEHHHCCCCCCCCCCCCCCEE
VLMTLPATWVARYSSKNYFAIDPVFQEDAPYYRNDTSAIARDLKEDADICPAVAELLHDA
EEEECCHHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
EKHGLGNLFIAVSARNPKGVAGCTVFTFEVEDEDRTQFLARMRPRLLSLAGIIHGTVCGC
HHCCCCEEEEEEECCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
KDANSVASLLTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSA
CCHHHHHHHCCCCHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHH
VATALSLGIIDMPEVQHLV
HHHHHHHCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA