Definition | Brucella melitensis ATCC 23457 chromosome chromosome II, complete sequence. |
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Accession | NC_012442 |
Length | 1,185,518 |
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The map label for this gene is yeaT [C]
Identifier: 225685962
GI number: 225685962
Start: 94842
End: 95735
Strand: Reverse
Name: yeaT [C]
Synonym: BMEA_B0100
Alternate gene names: 225685962
Gene position: 95735-94842 (Counterclockwise)
Preceding gene: 225685963
Following gene: 225685961
Centisome position: 8.08
GC content: 59.73
Gene sequence:
>894_bases ATGGACACGCTGACACGCATGCGCGCCTTCATCGACGTGGTCGAGGCGGAAGGCTTTTCCGCCGCAGCGCGCAAGATCGG GCGGTCCAAGGCACTTCTTTCCAAATATGTGCGCGAGCTGGAAGACGAACTCGGTGCCCGGCTTCTCAACCGCACCACGC GGCAATTCTCGCTTACTGAGGCCGGACATACCTATTATCACCGCGCGCTCGAAATCATCCGCGAGATCGATGCGCTTCAA GATGCCGTCAGCGAAACCAGTTCGGATGCACGCGGCCGCATCAAGCTTTCCGCCCCGCGTACATTCGCCGATGCCGTGAT CGGTCAGTCACTCATCGATTTCTGCCTTGCACACCCGGAAATCGTGCTCGACGTGCGGCTGGACGACCGTTTTGTCGATC TGGTGGAAGAAGGCTTCGACCTTGCCATCCGCATCACACGCTTGCAGGACTCCTCCCTCATTGCAAAGCGGCTGTCACCA TTCCATTCCGTCTTGTGCGGCGCGCCGGAACTGATCGCCCGCGTGGGCAAGCCACAACGGCCGGAGGATCTGACCGACCG CCCCTGTATCGTCGACACCAATGCGCGCGCGCGCAATAATTGGCACTTCCGCAATATGGACGGCTCAATGATGACCGTGC CGGTCAGCGGCCCGATCGAGATAAACAGCCCCGTCGCCACCAAGAATGCGGCGCTTGCGGGCCTCGGCTTCTGCATGTTG CCTGCTTTCATCGCCGAAGATGAGATCGAGCAAGGCAAGCTGATCACCTGCCTGGACGAATTCATCGTCCGGGATGGCGG CATCTATGCGGTCTATCCCCATCGGCGCTATCTGCCCGCGAAAATCCGCGCACTCGTGGATTTTATGACCCAATGGTTCA AGGAGCGGGAATAG
Upstream 100 bases:
>100_bases GTATGACGCACCCTTTGGCATTTCCTTCATCGGACCACGCGGCAGCGACCGGACGCTGATCGCGCTGGCTCAAACCATCA TCAGCGAGCGGAGTTAGACC
Downstream 100 bases:
>100_bases TGTCTCACTTTTGCCGCCTTCAGGCATAAGCGTAATCCAATGAAATTTTCTATGCTGGTTTCGCTCTGGCCCAGGCGCAG CTTCGTCCGGTCTGCCGCAA
Product: LysR family transcriptional regulator
Products: NA
Alternate protein names: ORF2 [H]
Number of amino acids: Translated: 297; Mature: 297
Protein sequence:
>297_residues MDTLTRMRAFIDVVEAEGFSAAARKIGRSKALLSKYVRELEDELGARLLNRTTRQFSLTEAGHTYYHRALEIIREIDALQ DAVSETSSDARGRIKLSAPRTFADAVIGQSLIDFCLAHPEIVLDVRLDDRFVDLVEEGFDLAIRITRLQDSSLIAKRLSP FHSVLCGAPELIARVGKPQRPEDLTDRPCIVDTNARARNNWHFRNMDGSMMTVPVSGPIEINSPVATKNAALAGLGFCML PAFIAEDEIEQGKLITCLDEFIVRDGGIYAVYPHRRYLPAKIRALVDFMTQWFKERE
Sequences:
>Translated_297_residues MDTLTRMRAFIDVVEAEGFSAAARKIGRSKALLSKYVRELEDELGARLLNRTTRQFSLTEAGHTYYHRALEIIREIDALQ DAVSETSSDARGRIKLSAPRTFADAVIGQSLIDFCLAHPEIVLDVRLDDRFVDLVEEGFDLAIRITRLQDSSLIAKRLSP FHSVLCGAPELIARVGKPQRPEDLTDRPCIVDTNARARNNWHFRNMDGSMMTVPVSGPIEINSPVATKNAALAGLGFCML PAFIAEDEIEQGKLITCLDEFIVRDGGIYAVYPHRRYLPAKIRALVDFMTQWFKERE >Mature_297_residues MDTLTRMRAFIDVVEAEGFSAAARKIGRSKALLSKYVRELEDELGARLLNRTTRQFSLTEAGHTYYHRALEIIREIDALQ DAVSETSSDARGRIKLSAPRTFADAVIGQSLIDFCLAHPEIVLDVRLDDRFVDLVEEGFDLAIRITRLQDSSLIAKRLSP FHSVLCGAPELIARVGKPQRPEDLTDRPCIVDTNARARNNWHFRNMDGSMMTVPVSGPIEINSPVATKNAALAGLGFCML PAFIAEDEIEQGKLITCLDEFIVRDGGIYAVYPHRRYLPAKIRALVDFMTQWFKERE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI87081978, Length=297, Percent_Identity=32.3232323232323, Blast_Score=154, Evalue=5e-39, Organism=Escherichia coli, GI1786401, Length=286, Percent_Identity=32.1678321678322, Blast_Score=152, Evalue=2e-38, Organism=Escherichia coli, GI145693193, Length=297, Percent_Identity=30.6397306397306, Blast_Score=150, Evalue=6e-38, Organism=Escherichia coli, GI1789639, Length=295, Percent_Identity=29.1525423728814, Blast_Score=145, Evalue=4e-36, Organism=Escherichia coli, GI1789440, Length=292, Percent_Identity=30.8219178082192, Blast_Score=143, Evalue=1e-35, Organism=Escherichia coli, GI1787128, Length=289, Percent_Identity=29.0657439446367, Blast_Score=139, Evalue=3e-34, Organism=Escherichia coli, GI1787589, Length=285, Percent_Identity=29.4736842105263, Blast_Score=120, Evalue=9e-29, Organism=Escherichia coli, GI1789173, Length=270, Percent_Identity=26.2962962962963, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1786448, Length=297, Percent_Identity=25.5892255892256, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1790011, Length=287, Percent_Identity=23.3449477351916, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1787601, Length=134, Percent_Identity=25.3731343283582, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI157672245, Length=117, Percent_Identity=30.7692307692308, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI1788748, Length=146, Percent_Identity=28.7671232876712, Blast_Score=63, Evalue=2e-11,
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000847 - InterPro: IPR005119 - InterPro: IPR011991 [H]
Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]
EC number: NA
Molecular weight: Translated: 33395; Mature: 33395
Theoretical pI: Translated: 6.26; Mature: 6.26
Prosite motif: PS50931 HTH_LYSR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDTLTRMRAFIDVVEAEGFSAAARKIGRSKALLSKYVRELEDELGARLLNRTTRQFSLTE CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHH AGHTYYHRALEIIREIDALQDAVSETSSDARGRIKLSAPRTFADAVIGQSLIDFCLAHPE CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCC IVLDVRLDDRFVDLVEEGFDLAIRITRLQDSSLIAKRLSPFHSVLCGAPELIARVGKPQR EEEEEEECHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCC PEDLTDRPCIVDTNARARNNWHFRNMDGSMMTVPVSGPIEINSPVATKNAALAGLGFCML CCCCCCCCEEEECCCCCCCCCEEECCCCCEEEEECCCCEEECCCCCCCCHHHHHHHHHHH PAFIAEDEIEQGKLITCLDEFIVRDGGIYAVYPHRRYLPAKIRALVDFMTQWFKERE HHHHHHCHHHCCCHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MDTLTRMRAFIDVVEAEGFSAAARKIGRSKALLSKYVRELEDELGARLLNRTTRQFSLTE CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHH AGHTYYHRALEIIREIDALQDAVSETSSDARGRIKLSAPRTFADAVIGQSLIDFCLAHPE CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCC IVLDVRLDDRFVDLVEEGFDLAIRITRLQDSSLIAKRLSPFHSVLCGAPELIARVGKPQR EEEEEEECHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCC PEDLTDRPCIVDTNARARNNWHFRNMDGSMMTVPVSGPIEINSPVATKNAALAGLGFCML CCCCCCCCEEEECCCCCCCCCEEECCCCCEEEEECCCCEEECCCCCCCCHHHHHHHHHHH PAFIAEDEIEQGKLITCLDEFIVRDGGIYAVYPHRRYLPAKIRALVDFMTQWFKERE HHHHHHCHHHCCCHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8635745; 7542800 [H]