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The map label for this gene is kdsD [H]

Identifier: 225685940

GI number: 225685940

Start: 72010

End: 73011

Strand: Direct

Name: kdsD [H]

Synonym: BMEA_B0077

Alternate gene names: 225685940

Gene position: 72010-73011 (Clockwise)

Preceding gene: 225685938

Following gene: 225685948

Centisome position: 6.07

GC content: 59.58

Gene sequence:

>1002_bases
ATGGAAAAGCTTGATATCACCCAGAAACTGGCGGATGCGGAAGCGGCCATCACTTCGGCGCTGCGCACGATAAAGATCGA
GAATGCGGGCCTTGTGGCGCTGGAAGAGGCGCTGAACAACGGCCTTTCCGGCCCTTTTGTCGAAGCGGTGGAGCGGATTG
TCGCCTCCAGGGGGCGGCTCGTCGTCACCGGCGTCGGCAAGAGCGGCCATATCGGCTCCAAGCTTGCCGCCACCTTTGCC
TCGACGGGCACCTCGGCCTTTTTTGTTCACTCGGGTGAAGCCAATCACGGCGATCTCGGCATGATTGGCCTGGAAGACGT
CATTCTGGCGATTTCCTGGTCCGGTGAAACCGTGGAGCTGAAAGGCATCGTCAATTATTCGCAGCGTTTCCGCATTCCGC
TCATCGCCATCACCTCGCGTCAGGATTCAGCCCTTGGCCGCGCGGCGGATGTGGTGCTTCTCCTGCCGAAGGCGACTGAA
GCCTGCCCGCATGGGCTTGCTCCCACCACTTCCACGATGATGCAGCTTGCCATTGGCGATGCGCTGGCCATTGCGCTTCT
CGAAGCGCGCGGCTTCACACCAAGCGATTTCAAGACTTTCCATCCCGGCGGCTCGCTCGGTGCCAGCCTTATTCATATCC
GCGATATCATGCATCGCGGCAACCGTTTGCCGCTCGTGAAAACGGGCACGCCCATGCCGGATGCGATGAAGGTGCTGGCG
CAGAAGAGTTTCGGCTGCGTCGTTGTGACCGATGATGCAGGCGAACTTGCCGGTATCGTCACGGACGGCGACATTTCGCG
CAATCTGAGCCGCAATCTTTCGGCCCTTGCCGTTGACGATATCATGACACGCAGCCCGCGAACGATAGACCAGAACATGC
TGGCGTCTGCTGCACTCAAGACGATCAATGAAAACCATATTGGCGCGCTGATCGTGGTCGAGGCGAACCGGCCGATCGGC
TTGGTGCATTTCCATGATCTGCTTCGGATAGGCGCGGCGTGA

Upstream 100 bases:

>100_bases
AAGGGATATGGTTAATGAATAGTTGCCGTCGCCTGTCCGGGTTAAGAAGCGTGCAACATTTGTTGGACAAGCGGCGAAGA
AGAGGCTAACGCTCTGCGCC

Downstream 100 bases:

>100_bases
GTAAGGGAGTAAGGGAGTAAGGGAGTAAGTTAAAAAATAACTTGCTTTATCTTATCTGATTCTTTCAAATTCCCCTATTC
CCCTATTCCCCTATTCCCCT

Product: sugar isomerase, KpsF/GutQ family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 333; Mature: 333

Protein sequence:

>333_residues
MEKLDITQKLADAEAAITSALRTIKIENAGLVALEEALNNGLSGPFVEAVERIVASRGRLVVTGVGKSGHIGSKLAATFA
STGTSAFFVHSGEANHGDLGMIGLEDVILAISWSGETVELKGIVNYSQRFRIPLIAITSRQDSALGRAADVVLLLPKATE
ACPHGLAPTTSTMMQLAIGDALAIALLEARGFTPSDFKTFHPGGSLGASLIHIRDIMHRGNRLPLVKTGTPMPDAMKVLA
QKSFGCVVVTDDAGELAGIVTDGDISRNLSRNLSALAVDDIMTRSPRTIDQNMLASAALKTINENHIGALIVVEANRPIG
LVHFHDLLRIGAA

Sequences:

>Translated_333_residues
MEKLDITQKLADAEAAITSALRTIKIENAGLVALEEALNNGLSGPFVEAVERIVASRGRLVVTGVGKSGHIGSKLAATFA
STGTSAFFVHSGEANHGDLGMIGLEDVILAISWSGETVELKGIVNYSQRFRIPLIAITSRQDSALGRAADVVLLLPKATE
ACPHGLAPTTSTMMQLAIGDALAIALLEARGFTPSDFKTFHPGGSLGASLIHIRDIMHRGNRLPLVKTGTPMPDAMKVLA
QKSFGCVVVTDDAGELAGIVTDGDISRNLSRNLSALAVDDIMTRSPRTIDQNMLASAALKTINENHIGALIVVEANRPIG
LVHFHDLLRIGAA
>Mature_333_residues
MEKLDITQKLADAEAAITSALRTIKIENAGLVALEEALNNGLSGPFVEAVERIVASRGRLVVTGVGKSGHIGSKLAATFA
STGTSAFFVHSGEANHGDLGMIGLEDVILAISWSGETVELKGIVNYSQRFRIPLIAITSRQDSALGRAADVVLLLPKATE
ACPHGLAPTTSTMMQLAIGDALAIALLEARGFTPSDFKTFHPGGSLGASLIHIRDIMHRGNRLPLVKTGTPMPDAMKVLA
QKSFGCVVVTDDAGELAGIVTDGDISRNLSRNLSALAVDDIMTRSPRTIDQNMLASAALKTINENHIGALIVVEANRPIG
LVHFHDLLRIGAA

Specific function: Catalyzes the interconversion of D-arabinose 5-phosphate and D-ribulose 5-phosphate [H]

COG id: COG0794

COG function: function code M; Predicted sugar phosphate isomerase involved in capsule formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI1789588, Length=311, Percent_Identity=45.3376205787781, Blast_Score=268, Evalue=3e-73,
Organism=Escherichia coli, GI87082151, Length=325, Percent_Identity=40.9230769230769, Blast_Score=199, Evalue=1e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000644
- InterPro:   IPR004800
- InterPro:   IPR001347 [H]

Pfam domain/function: PF00571 CBS; PF01380 SIS [H]

EC number: =5.3.1.13 [H]

Molecular weight: Translated: 35005; Mature: 35005

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: PS00191 CYTOCHROME_B5_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKLDITQKLADAEAAITSALRTIKIENAGLVALEEALNNGLSGPFVEAVERIVASRGRL
CCCCHHHHHHHHHHHHHHHHHHEEEECCCCCEEHHHHHHCCCCCHHHHHHHHHHHCCCCE
VVTGVGKSGHIGSKLAATFASTGTSAFFVHSGEANHGDLGMIGLEDVILAISWSGETVEL
EEEECCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCEEEEECCEEEEEEECCCCEEEE
KGIVNYSQRFRIPLIAITSRQDSALGRAADVVLLLPKATEACPHGLAPTTSTMMQLAIGD
EEEECCCHHCEEEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH
ALAIALLEARGFTPSDFKTFHPGGSLGASLIHIRDIMHRGNRLPLVKTGTPMPDAMKVLA
HHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHH
QKSFGCVVVTDDAGELAGIVTDGDISRNLSRNLSALAVDDIMTRSPRTIDQNMLASAALK
HCCCCEEEEECCCCCEEEEEECCHHHHHHHCCCHHEEHHHHHCCCCCCHHHHHHHHHHHH
TINENHIGALIVVEANRPIGLVHFHDLLRIGAA
HCCCCCCEEEEEEECCCCEEEHHHHHHHHHCCC
>Mature Secondary Structure
MEKLDITQKLADAEAAITSALRTIKIENAGLVALEEALNNGLSGPFVEAVERIVASRGRL
CCCCHHHHHHHHHHHHHHHHHHEEEECCCCCEEHHHHHHCCCCCHHHHHHHHHHHCCCCE
VVTGVGKSGHIGSKLAATFASTGTSAFFVHSGEANHGDLGMIGLEDVILAISWSGETVEL
EEEECCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCEEEEECCEEEEEEECCCCEEEE
KGIVNYSQRFRIPLIAITSRQDSALGRAADVVLLLPKATEACPHGLAPTTSTMMQLAIGD
EEEECCCHHCEEEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH
ALAIALLEARGFTPSDFKTFHPGGSLGASLIHIRDIMHRGNRLPLVKTGTPMPDAMKVLA
HHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHH
QKSFGCVVVTDDAGELAGIVTDGDISRNLSRNLSALAVDDIMTRSPRTIDQNMLASAALK
HCCCCEEEEECCCCCEEEEEECCHHHHHHHCCCHHEEHHHHHCCCCCCHHHHHHHHHHHH
TINENHIGALIVVEANRPIGLVHFHDLLRIGAA
HCCCCCCEEEEEEECCCCEEEHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430 [H]