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The map label for this gene is virB1 [H]

Identifier: 225685936

GI number: 225685936

Start: 66527

End: 67243

Strand: Reverse

Name: virB1 [H]

Synonym: BMEA_B0073

Alternate gene names: 225685936

Gene position: 67243-66527 (Counterclockwise)

Preceding gene: 225685937

Following gene: 225685935

Centisome position: 5.67

GC content: 56.62

Gene sequence:

>717_bases
ATGGTGCCATTCCTTGTCCTCGCGCAACAATGCGCACCGACTGTTGCACCTCAGACTATGGCAGCAATCGTGCAGGTCGA
GTCGGGCTTCAATCCTTATGCAATAGGCGTCGTTGGTGGGCGGTTGGTCCGTCAACCCGTTTCCCTTGATGAAGCAATCA
CGACAGCACAGTCACTGGAAGCCAAAGGCTGGAATTTCTCTTTGGGTATTGCTCAAGTCAACAGGTACAATCTGCCGAAA
TATGGCAGCACCTACGCACAAGCGTTCGACCCCTGCAAGAACCTGAAGATGGGATCCAAGATCCTTGAAGACTGCTACCG
TCGGGCCATCGTGAAGATGCCCGGTCAGGAACAAGGCGCGCTTCGCGCCGCATTCTCCTGTTACTACGCCGGCAACTTTA
CGGGCGGCTTCAAGACGAAGCCCGGCAGTCCCAGCTACGTGCAGAAGGTCGTGGCAAGCGCCGACGTGACCACAAAGCCG
ATTGTTGTCGTGCCCATGATCCGGAAAACGCCGGATGCGGCGGCAGCAGTAGCTGCCCCAGTAAAAAAACGACAGCCGGC
TGATCGTAATTCTGTTCTTGTCGATCTGCATCCATCATCGCAGTCGATGCCAGCCACCGGCGCGGCGAACGCGCCTGTAA
GGCTGAAGACAGAGCAGCCGGCGACAACCGATGCGCCGCCAGGGAAGGATAATACGGACGGCGTAGTTGTTTTCTAA

Upstream 100 bases:

>100_bases
ATATCGGCTTAAACAACACTACCCAATAATGACCGATATCGCTGATCTATAATTAAGGCTATCATAATAATCGTCCATTC
TCTGAGAAGGAGACGATCCT

Downstream 100 bases:

>100_bases
CCCATCATCCGATCAGGCACGCATATAAAATTGATGATGGTGGAGGGTCCGAACAGGACTGGGAAGGTTATAGCGGCGGG
CGGCGACGATAGGAGGCAGT

Product: Lytic transglycosylase catalytic

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MVPFLVLAQQCAPTVAPQTMAAIVQVESGFNPYAIGVVGGRLVRQPVSLDEAITTAQSLEAKGWNFSLGIAQVNRYNLPK
YGSTYAQAFDPCKNLKMGSKILEDCYRRAIVKMPGQEQGALRAAFSCYYAGNFTGGFKTKPGSPSYVQKVVASADVTTKP
IVVVPMIRKTPDAAAAVAAPVKKRQPADRNSVLVDLHPSSQSMPATGAANAPVRLKTEQPATTDAPPGKDNTDGVVVF

Sequences:

>Translated_238_residues
MVPFLVLAQQCAPTVAPQTMAAIVQVESGFNPYAIGVVGGRLVRQPVSLDEAITTAQSLEAKGWNFSLGIAQVNRYNLPK
YGSTYAQAFDPCKNLKMGSKILEDCYRRAIVKMPGQEQGALRAAFSCYYAGNFTGGFKTKPGSPSYVQKVVASADVTTKP
IVVVPMIRKTPDAAAAVAAPVKKRQPADRNSVLVDLHPSSQSMPATGAANAPVRLKTEQPATTDAPPGKDNTDGVVVF
>Mature_238_residues
MVPFLVLAQQCAPTVAPQTMAAIVQVESGFNPYAIGVVGGRLVRQPVSLDEAITTAQSLEAKGWNFSLGIAQVNRYNLPK
YGSTYAQAFDPCKNLKMGSKILEDCYRRAIVKMPGQEQGALRAAFSCYYAGNFTGGFKTKPGSPSYVQKVVASADVTTKP
IVVVPMIRKTPDAAAAVAAPVKKRQPADRNSVLVDLHPSSQSMPATGAANAPVRLKTEQPATTDAPPGKDNTDGVVVF

Specific function: The virB operon is essential for intracellular survival and is not involved in the invasion process. Constitutes a major determinant of virulence in mice [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the virb1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008258 [H]

Pfam domain/function: PF01464 SLT [H]

EC number: NA

Molecular weight: Translated: 25228; Mature: 25228

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVPFLVLAQQCAPTVAPQTMAAIVQVESGFNPYAIGVVGGRLVRQPVSLDEAITTAQSLE
CCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEEEECCCHHHHCCCCHHHHHHHHHHHH
AKGWNFSLGIAQVNRYNLPKYGSTYAQAFDPCKNLKMGSKILEDCYRRAIVKMPGQEQGA
CCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHH
LRAAFSCYYAGNFTGGFKTKPGSPSYVQKVVASADVTTKPIVVVPMIRKTPDAAAAVAAP
HHHHEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHH
VKKRQPADRNSVLVDLHPSSQSMPATGAANAPVRLKTEQPATTDAPPGKDNTDGVVVF
HHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEC
>Mature Secondary Structure
MVPFLVLAQQCAPTVAPQTMAAIVQVESGFNPYAIGVVGGRLVRQPVSLDEAITTAQSLE
CCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEEEECCCHHHHCCCCHHHHHHHHHHHH
AKGWNFSLGIAQVNRYNLPKYGSTYAQAFDPCKNLKMGSKILEDCYRRAIVKMPGQEQGA
CCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHH
LRAAFSCYYAGNFTGGFKTKPGSPSYVQKVVASADVTTKPIVVVPMIRKTPDAAAAVAAP
HHHHEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHH
VKKRQPADRNSVLVDLHPSSQSMPATGAANAPVRLKTEQPATTDAPPGKDNTDGVVVF
HHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10940027 [H]