Definition | Brucella melitensis ATCC 23457 chromosome chromosome II, complete sequence. |
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Accession | NC_012442 |
Length | 1,185,518 |
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The map label for this gene is virB4 [H]
Identifier: 225685933
GI number: 225685933
Start: 62915
End: 65410
Strand: Reverse
Name: virB4 [H]
Synonym: BMEA_B0070
Alternate gene names: 225685933
Gene position: 65410-62915 (Counterclockwise)
Preceding gene: 225685934
Following gene: 225685932
Centisome position: 5.52
GC content: 55.61
Gene sequence:
>2496_bases ATGGGCGCTCAATCCAAATACGCGCAACAGCTCAATAATGAACGGTCACTTGCACCGTTCATTCCCTTCAGGAGCCAGGT TGGCCCGACCACCGTGATAACGCGTGACGGTGATTTCGTGCGCACATGGCGCATCGCGGGCCTGGCTTTCGAGACGCAGG ACAAGGAGAAACTGTTGATCCGCAAGGACCAGCTTAACACCTTGTTCCGTGCCATCGCCTCAAACAATGTGGCGCTGTGG TCCCACAACGTACGGCGCAGAACCTGGGATCACTTGAAATCCTTCTTTTCCAATCCGTTCTGCGACGCTCTCGACAAGAA GTATTACGGATCGTTTTCCGGCTACCGAATGATGTCAAACGAACTGTATCTGACGGTTATTTACCGGCCAGTGCCGGCGA AGATCAGCAGGTTGTTCAACGTGGCCGTTCATCGTTCGCATGCGGAAATCTTACAGGAGCAGCAGCTTGCCATCCGCAAG CTGGACGAAATCGGCAATCAAATTGAAACCAGCTTGCGTCGCTACGGTGGCGATGACGGGCGTGGCATCGAAGTGCTGAG CACCTATGAGGACAAACACGGCGCACTGTGCTCACAGCAGCTTGAATTTTATAACTTCCTTCTCTCAGGCGAATGGCAGA AGGTGCGCGTGCCATCCTGCCCACTGGATGAATATCTGGGCACCGGGTGGGTGTATGCTGGCACTGAAACCATCGAGATA CGCACCGCGAGCGCGACGCGCTATGCGCGTGGCATCGATTTCAAGGACTATGCGAACCACACCGAGCCGGGCATTTTGAA CGGCCTGATGTATAGCGATTACGAGTACGTCATCACACAATCCTTCAGCTTCATGACAAAGCGGGATGGCAAGGAGTTCC TGACACGGCAAAAGCAGCGGCTCCAAAATACCGAAGACGGCAGCGCATCCCAGATCATGGAAATGGACATTGCCATCGAC CAGCTCGGCCGGGGCGATTTCGTCATGGGTGAATATCATTATTCGCTGCTGGTATTTGCCGAAGACATGGAGACGGTGCG CCACAACACATCACATGCGATGAACATCCTGCAAGACAATGGTTTTCTGGCGACGGTGATCGCCACGGCCACGGATGCGG CGTTCTATGCACAACTGCCATGTAACTGGCGGTATCGGCCGCGCGTGGCGGGCCTGACCTCGCTCAACTTCGCCGGTCTG TCATGTTTCCATAATTTCCGCGCAGGCAAGCGGGATGGCAACCCCTGGGGGCAGGCATTGACGCTGCTCAAAACCCCTTC CGGACAGCCCGCCTACCTGAACTTCCACTATTCAAAAGGCGACGAAGACAACTTCGACAAGAAGCTTCTGGGCAATACCC GCATCATCGGCCAGTCCGGCGCTGGTAAAACTGTCCTGATGAACTTCTGCCTCGCGCAAGCGCAGAAGTATTTGCACAAT GCTCCGATGGGTATGTGCAACGTCTTTTTCGACAAGGATCAAGGCGCGAAAGGGACTATTCTTGCCATTGGCGGCAAATA CCTTGCCATCAGGAACGGCGAACCCACCGGGTTCAACCCATTCCAGATGGAGCCAACAGCGGGGAACATCCTGTTCCTTG AAAAACTCGTACAGGTACTGGTATCGCGTGATGGCCAGCACGTGACCACAACGGACGAAAGCCGGATCAGTCATGCCATA CGTACGGTCATGCGCATGCGCCCGGAGCTGCGGCGTCTGTCGACGGTGCTGCAAAACGTTACCGAAGGCAGCGACCGCCA AGATCGTGAAAACAGCGTGGCGAAGCGGCTCGCGAAGTGGTGTTTTGATGACGGCACCGGCAAGCGGGGCACATTCTGGT GGGTGCTGGATTGCCCGCAAGACCAGATCGACTTCAACACGCATAGCAATTACGGTTTCGATGGCACCGACTTCCTCGAC AACGCCGACGTGCGTACGCCGATTTCCATGTACCTGCTGCATCGTATGGAATTGGCTATCGACGGGCGTCGTTTCATCTA CTGGATGGACGAGGCGTGGAAGTGGGTAGACGACGAAGCATTCAGCGAGTTCGCCAATAACAAGCAGCTTACCATCCGCA AGCAAAACGGCCTGGGCGTGTTTGCCACGCAAATGCCCTCCAGCCTGCTCAACTCCAAAGTCGCGTCGGCCCTGGTGCAA CAGGTGGCGACGGAAATCTATCTGCCGAATCCGAAAGCCGATTATCACGAGTACACGGACGGCTTCAAGGTGACGAACGA GGAGTTCGACATCATCCGCAGTATGAGCGAGGAAAGCCGCATGTTCCTGGTCAAGCAGGGGCATCATTCGATGATTTGCC GCCTGGAGCTTAATGGCTTTGATGACGAACTGGCGATCCTCTCAGGCAGCTCGGACAACAACGAGTTGCTGGACCAGGTC ATTGCCGAAGTCGGGGACGACCCTTCGGTATGGCTTCCGGTGTTCCAGGAGCGCCGGAAAGCACGCATTGCGTCGTCCAA ATCAACAGGAAGGTGA
Upstream 100 bases:
>100_bases AGGCGCAATTCCGCCTGATCCACTTCAACCGCACCGGGCGCTTCTGGCGGGCATCCGCCTATAGCCCGATTGCCTTCACA AAGCGCAAAAGAGAATCATA
Downstream 100 bases:
>100_bases CACTATGAAGAAGATAATTCTCAGCTTCGCATTCGCCCTGACTGTAACCAGCACGGCGCACGCACAGCTCCCGGTGACAG ATGCCGGCTCCATCGCGCAG
Product: type IV secretion/conjugal transfer ATPase, VirB4 family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 831; Mature: 830
Protein sequence:
>831_residues MGAQSKYAQQLNNERSLAPFIPFRSQVGPTTVITRDGDFVRTWRIAGLAFETQDKEKLLIRKDQLNTLFRAIASNNVALW SHNVRRRTWDHLKSFFSNPFCDALDKKYYGSFSGYRMMSNELYLTVIYRPVPAKISRLFNVAVHRSHAEILQEQQLAIRK LDEIGNQIETSLRRYGGDDGRGIEVLSTYEDKHGALCSQQLEFYNFLLSGEWQKVRVPSCPLDEYLGTGWVYAGTETIEI RTASATRYARGIDFKDYANHTEPGILNGLMYSDYEYVITQSFSFMTKRDGKEFLTRQKQRLQNTEDGSASQIMEMDIAID QLGRGDFVMGEYHYSLLVFAEDMETVRHNTSHAMNILQDNGFLATVIATATDAAFYAQLPCNWRYRPRVAGLTSLNFAGL SCFHNFRAGKRDGNPWGQALTLLKTPSGQPAYLNFHYSKGDEDNFDKKLLGNTRIIGQSGAGKTVLMNFCLAQAQKYLHN APMGMCNVFFDKDQGAKGTILAIGGKYLAIRNGEPTGFNPFQMEPTAGNILFLEKLVQVLVSRDGQHVTTTDESRISHAI RTVMRMRPELRRLSTVLQNVTEGSDRQDRENSVAKRLAKWCFDDGTGKRGTFWWVLDCPQDQIDFNTHSNYGFDGTDFLD NADVRTPISMYLLHRMELAIDGRRFIYWMDEAWKWVDDEAFSEFANNKQLTIRKQNGLGVFATQMPSSLLNSKVASALVQ QVATEIYLPNPKADYHEYTDGFKVTNEEFDIIRSMSEESRMFLVKQGHHSMICRLELNGFDDELAILSGSSDNNELLDQV IAEVGDDPSVWLPVFQERRKARIASSKSTGR
Sequences:
>Translated_831_residues MGAQSKYAQQLNNERSLAPFIPFRSQVGPTTVITRDGDFVRTWRIAGLAFETQDKEKLLIRKDQLNTLFRAIASNNVALW SHNVRRRTWDHLKSFFSNPFCDALDKKYYGSFSGYRMMSNELYLTVIYRPVPAKISRLFNVAVHRSHAEILQEQQLAIRK LDEIGNQIETSLRRYGGDDGRGIEVLSTYEDKHGALCSQQLEFYNFLLSGEWQKVRVPSCPLDEYLGTGWVYAGTETIEI RTASATRYARGIDFKDYANHTEPGILNGLMYSDYEYVITQSFSFMTKRDGKEFLTRQKQRLQNTEDGSASQIMEMDIAID QLGRGDFVMGEYHYSLLVFAEDMETVRHNTSHAMNILQDNGFLATVIATATDAAFYAQLPCNWRYRPRVAGLTSLNFAGL SCFHNFRAGKRDGNPWGQALTLLKTPSGQPAYLNFHYSKGDEDNFDKKLLGNTRIIGQSGAGKTVLMNFCLAQAQKYLHN APMGMCNVFFDKDQGAKGTILAIGGKYLAIRNGEPTGFNPFQMEPTAGNILFLEKLVQVLVSRDGQHVTTTDESRISHAI RTVMRMRPELRRLSTVLQNVTEGSDRQDRENSVAKRLAKWCFDDGTGKRGTFWWVLDCPQDQIDFNTHSNYGFDGTDFLD NADVRTPISMYLLHRMELAIDGRRFIYWMDEAWKWVDDEAFSEFANNKQLTIRKQNGLGVFATQMPSSLLNSKVASALVQ QVATEIYLPNPKADYHEYTDGFKVTNEEFDIIRSMSEESRMFLVKQGHHSMICRLELNGFDDELAILSGSSDNNELLDQV IAEVGDDPSVWLPVFQERRKARIASSKSTGR >Mature_830_residues GAQSKYAQQLNNERSLAPFIPFRSQVGPTTVITRDGDFVRTWRIAGLAFETQDKEKLLIRKDQLNTLFRAIASNNVALWS HNVRRRTWDHLKSFFSNPFCDALDKKYYGSFSGYRMMSNELYLTVIYRPVPAKISRLFNVAVHRSHAEILQEQQLAIRKL DEIGNQIETSLRRYGGDDGRGIEVLSTYEDKHGALCSQQLEFYNFLLSGEWQKVRVPSCPLDEYLGTGWVYAGTETIEIR TASATRYARGIDFKDYANHTEPGILNGLMYSDYEYVITQSFSFMTKRDGKEFLTRQKQRLQNTEDGSASQIMEMDIAIDQ LGRGDFVMGEYHYSLLVFAEDMETVRHNTSHAMNILQDNGFLATVIATATDAAFYAQLPCNWRYRPRVAGLTSLNFAGLS CFHNFRAGKRDGNPWGQALTLLKTPSGQPAYLNFHYSKGDEDNFDKKLLGNTRIIGQSGAGKTVLMNFCLAQAQKYLHNA PMGMCNVFFDKDQGAKGTILAIGGKYLAIRNGEPTGFNPFQMEPTAGNILFLEKLVQVLVSRDGQHVTTTDESRISHAIR TVMRMRPELRRLSTVLQNVTEGSDRQDRENSVAKRLAKWCFDDGTGKRGTFWWVLDCPQDQIDFNTHSNYGFDGTDFLDN ADVRTPISMYLLHRMELAIDGRRFIYWMDEAWKWVDDEAFSEFANNKQLTIRKQNGLGVFATQMPSSLLNSKVASALVQQ VATEIYLPNPKADYHEYTDGFKVTNEEFDIIRSMSEESRMFLVKQGHHSMICRLELNGFDDELAILSGSSDNNELLDQVI AEVGDDPSVWLPVFQERRKARIASSKSTGR
Specific function: The virB operon is essential for intracellular survival and is not involved in the invasion process. Constitutes a major determinant of virulence in mice [H]
COG id: COG3451
COG function: function code U; Type IV secretory pathway, VirB4 components
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the trbE/virB4 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004346 - InterPro: IPR018145 [H]
Pfam domain/function: PF03135 CagE_TrbE_VirB [H]
EC number: NA
Molecular weight: Translated: 94546; Mature: 94415
Theoretical pI: Translated: 6.83; Mature: 6.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGAQSKYAQQLNNERSLAPFIPFRSQVGPTTVITRDGDFVRTWRIAGLAFETQDKEKLLI CCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEEEEEEEECCCCHHHHE RKDQLNTLFRAIASNNVALWSHNVRRRTWDHLKSFFSNPFCDALDKKYYGSFSGYRMMSN EHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCEEECC ELYLTVIYRPVPAKISRLFNVAVHRSHAEILQEQQLAIRKLDEIGNQIETSLRRYGGDDG CEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC RGIEVLSTYEDKHGALCSQQLEFYNFLLSGEWQKVRVPSCPLDEYLGTGWVYAGTETIEI CCEEEEEECCCHHCHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHCCCCEEEECCEEEEE RTASATRYARGIDFKDYANHTEPGILNGLMYSDYEYVITQSFSFMTKRDGKEFLTRQKQR EECCHHHHHCCCCHHHHCCCCCCCHHCCCCCCCCCEEEECCHHHHHHCCCHHHHHHHHHH LQNTEDGSASQIMEMDIAIDQLGRGDFVMGEYHYSLLVFAEDMETVRHNTSHAMNILQDN HCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEEEHHHHHHHCCCHHHHHHHHCC GFLATVIATATDAAFYAQLPCNWRYRPRVAGLTSLNFAGLSCFHNFRAGKRDGNPWGQAL CEEEEEEEHHCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHEE TLLKTPSGQPAYLNFHYSKGDEDNFDKKLLGNTRIIGQSGAGKTVLMNFCLAQAQKYLHN EEEECCCCCCEEEEEEECCCCCCCCCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHH APMGMCNVFFDKDQGAKGTILAIGGKYLAIRNGEPTGFNPFQMEPTAGNILFLEKLVQVL CCCCEEEEEEECCCCCCEEEEEECCEEEEEECCCCCCCCCEEECCCCCCCHHHHHHHHHH VSRDGQHVTTTDESRISHAIRTVMRMRPELRRLSTVLQNVTEGSDRQDRENSVAKRLAKW HCCCCCEEECCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH CFDDGTGKRGTFWWVLDCPQDQIDFNTHSNYGFDGTDFLDNADVRTPISMYLLHRMELAI HCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHEE DGRRFIYWMDEAWKWVDDEAFSEFANNKQLTIRKQNGLGVFATQMPSSLLNSKVASALVQ CCCEEEEEECCHHCCCCHHHHHHHCCCCEEEEEECCCCEEEHHHCCHHHHHHHHHHHHHH QVATEIYLPNPKADYHEYTDGFKVTNEEFDIIRSMSEESRMFLVKQGHHSMICRLELNGF HHHHHEECCCCCCCHHHHCCCCEECCHHHHHHHHHCCCCEEEEEECCCCEEEEEEEECCC DDELAILSGSSDNNELLDQVIAEVGDDPSVWLPVFQERRKARIASSKSTGR CCCEEEEECCCCCHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure GAQSKYAQQLNNERSLAPFIPFRSQVGPTTVITRDGDFVRTWRIAGLAFETQDKEKLLI CCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEEEEEEEECCCCHHHHE RKDQLNTLFRAIASNNVALWSHNVRRRTWDHLKSFFSNPFCDALDKKYYGSFSGYRMMSN EHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCEEECC ELYLTVIYRPVPAKISRLFNVAVHRSHAEILQEQQLAIRKLDEIGNQIETSLRRYGGDDG CEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC RGIEVLSTYEDKHGALCSQQLEFYNFLLSGEWQKVRVPSCPLDEYLGTGWVYAGTETIEI CCEEEEEECCCHHCHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHCCCCEEEECCEEEEE RTASATRYARGIDFKDYANHTEPGILNGLMYSDYEYVITQSFSFMTKRDGKEFLTRQKQR EECCHHHHHCCCCHHHHCCCCCCCHHCCCCCCCCCEEEECCHHHHHHCCCHHHHHHHHHH LQNTEDGSASQIMEMDIAIDQLGRGDFVMGEYHYSLLVFAEDMETVRHNTSHAMNILQDN HCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEEEHHHHHHHCCCHHHHHHHHCC GFLATVIATATDAAFYAQLPCNWRYRPRVAGLTSLNFAGLSCFHNFRAGKRDGNPWGQAL CEEEEEEEHHCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHEE TLLKTPSGQPAYLNFHYSKGDEDNFDKKLLGNTRIIGQSGAGKTVLMNFCLAQAQKYLHN EEEECCCCCCEEEEEEECCCCCCCCCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHH APMGMCNVFFDKDQGAKGTILAIGGKYLAIRNGEPTGFNPFQMEPTAGNILFLEKLVQVL CCCCEEEEEEECCCCCCEEEEEECCEEEEEECCCCCCCCCEEECCCCCCCHHHHHHHHHH VSRDGQHVTTTDESRISHAIRTVMRMRPELRRLSTVLQNVTEGSDRQDRENSVAKRLAKW HCCCCCEEECCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH CFDDGTGKRGTFWWVLDCPQDQIDFNTHSNYGFDGTDFLDNADVRTPISMYLLHRMELAI HCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHEE DGRRFIYWMDEAWKWVDDEAFSEFANNKQLTIRKQNGLGVFATQMPSSLLNSKVASALVQ CCCEEEEEECCHHCCCCHHHHHHHCCCCEEEEEECCCCEEEHHHCCHHHHHHHHHHHHHH QVATEIYLPNPKADYHEYTDGFKVTNEEFDIIRSMSEESRMFLVKQGHHSMICRLELNGF HHHHHEECCCCCCCHHHHCCCCEECCHHHHHHHHHCCCCEEEEEECCCCEEEEEEEECCC DDELAILSGSSDNNELLDQVIAEVGDDPSVWLPVFQERRKARIASSKSTGR CCCEEEEECCCCCHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10940027 [H]