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The map label for this gene is araP [H]

Identifier: 222527378

GI number: 222527378

Start: 5163897

End: 5164811

Strand: Direct

Name: araP [H]

Synonym: Chy400_4168

Alternate gene names: 222527378

Gene position: 5163897-5164811 (Clockwise)

Preceding gene: 222527377

Following gene: 222527379

Centisome position: 98.01

GC content: 52.79

Gene sequence:

>915_bases
ATGCGCAATGACCGGCAGACAACATGGAGCCGCTGGTGGTACAGGGAAGCCAGCGCCTACGGCTTCGTCGCACCGTATGC
GTTGCTCTTCGCCATCTTTATCGCCATTCCGGTTCTGGCGGCGTTTCTGCTGTCGTTTACCTTCTTCGATTCGATTCAAC
CACCGCAATTTAACGGCTTGCTGAATTATATTGTGCTGTTAACTCAGGACGACATCTTTATGAAGTATGTCCTGCCCAAT
ACGATTCAGTTTGCCGTCCTGGTCGGTCCAGGTGGGTACGTGCTGGCATTTTTACTGGCATGGATGCTGGCCCAATTGCC
ACGCATCCCGCGCACCATCTTTGCGCTCATCCTCTATTCGCCATCAATGACGGCCGGCGTCGCAATGTCGGTCGTCTGGC
AAACGCTGTTTAGCGGCGACCAGAATGGGTATCTCAACAGTTTCTTGCTTAGCCTGAACCTGATCCAGGCACCGATACAA
TGGCTCCAATCACCGCAATACCTGATGACGATCATGATCATCGTTACCCTGTGGAGCAGTATGGGTGTCGGATTCCTGGC
CATGCTGGCAGGGCTGCTGGACATTAACCCTGAGTTATACGAAGCCGGTGCCCTTGACGGCATTAGTAATCGCTGGCAAG
AGATTTTCTACATTACCATCCCTTCGATGAAACCACAGATGCTGTTTGGGGCAGTAATGGCGATTGTCGGCACCTTTCAA
GCCGGAGCAATTGGTGTTGCGCTGTCTGGCAGCAACCCCACACCGCAATACGCCGGTCAACTGATTGTCAATCACATCGA
AGACTACGGCTTTCTGCGCTACGAAATGGGCTACGCTGCGGCGGTTTCGGTCGTTCTGCTCTTGATGGTATTGCTCTTCA
ATCGTCTGGCCAACAAACTGTTCCGAGAGGACTAA

Upstream 100 bases:

>100_bases
ATTGTGCGCAAAATGACCGAGTTCGGCTACATTCGCAATGGCGAACGGGTGCGCACCTTCACTATTCCAACCATCGATCT
GGTAAAGGAGTGGATGGACA

Downstream 100 bases:

>100_bases
CATGAGGCGTAAACGCTGGTTCAACTACAGCATGCGCGATAGCGGCATCAATCCACGCGGTTTTCATCCCAGCCAGATCA
AGTTCTATCTGGTGCTGGTA

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MRNDRQTTWSRWWYREASAYGFVAPYALLFAIFIAIPVLAAFLLSFTFFDSIQPPQFNGLLNYIVLLTQDDIFMKYVLPN
TIQFAVLVGPGGYVLAFLLAWMLAQLPRIPRTIFALILYSPSMTAGVAMSVVWQTLFSGDQNGYLNSFLLSLNLIQAPIQ
WLQSPQYLMTIMIIVTLWSSMGVGFLAMLAGLLDINPELYEAGALDGISNRWQEIFYITIPSMKPQMLFGAVMAIVGTFQ
AGAIGVALSGSNPTPQYAGQLIVNHIEDYGFLRYEMGYAAAVSVVLLLMVLLFNRLANKLFRED

Sequences:

>Translated_304_residues
MRNDRQTTWSRWWYREASAYGFVAPYALLFAIFIAIPVLAAFLLSFTFFDSIQPPQFNGLLNYIVLLTQDDIFMKYVLPN
TIQFAVLVGPGGYVLAFLLAWMLAQLPRIPRTIFALILYSPSMTAGVAMSVVWQTLFSGDQNGYLNSFLLSLNLIQAPIQ
WLQSPQYLMTIMIIVTLWSSMGVGFLAMLAGLLDINPELYEAGALDGISNRWQEIFYITIPSMKPQMLFGAVMAIVGTFQ
AGAIGVALSGSNPTPQYAGQLIVNHIEDYGFLRYEMGYAAAVSVVLLLMVLLFNRLANKLFRED
>Mature_304_residues
MRNDRQTTWSRWWYREASAYGFVAPYALLFAIFIAIPVLAAFLLSFTFFDSIQPPQFNGLLNYIVLLTQDDIFMKYVLPN
TIQFAVLVGPGGYVLAFLLAWMLAQLPRIPRTIFALILYSPSMTAGVAMSVVWQTLFSGDQNGYLNSFLLSLNLIQAPIQ
WLQSPQYLMTIMIIVTLWSSMGVGFLAMLAGLLDINPELYEAGALDGISNRWQEIFYITIPSMKPQMLFGAVMAIVGTFQ
AGAIGVALSGSNPTPQYAGQLIVNHIEDYGFLRYEMGYAAAVSVVLLLMVLLFNRLANKLFRED

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=239, Percent_Identity=25.1046025104602, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34012; Mature: 34012

Theoretical pI: Translated: 4.85; Mature: 4.85

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNDRQTTWSRWWYREASAYGFVAPYALLFAIFIAIPVLAAFLLSFTFFDSIQPPQFNGL
CCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
LNYIVLLTQDDIFMKYVLPNTIQFAVLVGPGGYVLAFLLAWMLAQLPRIPRTIFALILYS
HHHHHHEECCCHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHC
PSMTAGVAMSVVWQTLFSGDQNGYLNSFLLSLNLIQAPIQWLQSPQYLMTIMIIVTLWSS
CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
MGVGFLAMLAGLLDINPELYEAGALDGISNRWQEIFYITIPSMKPQMLFGAVMAIVGTFQ
CCHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHEEEEEEECCCCHHHHHHHHHHHHHHHC
AGAIGVALSGSNPTPQYAGQLIVNHIEDYGFLRYEMGYAAAVSVVLLLMVLLFNRLANKL
CCCEEEEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FRED
HCCC
>Mature Secondary Structure
MRNDRQTTWSRWWYREASAYGFVAPYALLFAIFIAIPVLAAFLLSFTFFDSIQPPQFNGL
CCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
LNYIVLLTQDDIFMKYVLPNTIQFAVLVGPGGYVLAFLLAWMLAQLPRIPRTIFALILYS
HHHHHHEECCCHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHC
PSMTAGVAMSVVWQTLFSGDQNGYLNSFLLSLNLIQAPIQWLQSPQYLMTIMIIVTLWSS
CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
MGVGFLAMLAGLLDINPELYEAGALDGISNRWQEIFYITIPSMKPQMLFGAVMAIVGTFQ
CCHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHEEEEEEECCCCHHHHHHHHHHHHHHHC
AGAIGVALSGSNPTPQYAGQLIVNHIEDYGFLRYEMGYAAAVSVVLLLMVLLFNRLANKL
CCCEEEEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FRED
HCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9084180; 8969504; 9384377; 10417639 [H]