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The map label for this gene is radC [C]

Identifier: 222527106

GI number: 222527106

Start: 4836717

End: 4837406

Strand: Direct

Name: radC [C]

Synonym: Chy400_3887

Alternate gene names: 222527106

Gene position: 4836717-4837406 (Clockwise)

Preceding gene: 222527105

Following gene: 222527112

Centisome position: 91.8

GC content: 56.52

Gene sequence:

>690_bases
ATGATCTCACTACGAATCCACGAACAACCGATCCACGATCAACCACGAGAGCGGCTGGCCCGCCAGGGGGCAGGAGCGTT
GAGCGACGCCGAATTACTGGCTATCCTGTTGCGGGTTGGCACCAACGGTACCAACGTCTTACAACTGGCGCAACAACTGC
TTGCAGAAAGTGGTGGGCTGCAAGGACTACAGCGCCTGGACTTTCAAGAGCTTTGTCGGCTGCATGGGATGGGGGTGAGT
AAAGCGGCCAGCGTCAAAGCCGCGCTTGAGATCGGGCGTCGTCTGGCCAGAAGCGCTATCGAGGAGCGGTTTCCCATCCG
CTCACCGGCTGATGTGGCGACACTGCTGTTAGTCGAAATGAGTCATCTCGATCAGGAGCATCTGCGCACGATCTTACTCG
ACACCAAAAATCGGGTGCAGCAGATCACCACGGTATATATTGGCAGCCTCAACTCGGCAAATGTGCGCGTCGGCGAGGTG
TTCAAAGAGGCGGTGCGGCGTAACAGCGCTGCTATCATCGTTGTCCATAACCATCCATCGGGCGAACCGACACCGTCTAT
GGAAGATATCGAGATCACCAGGCAACTAGTTTCCGCTGGTCGTCTGCTGGATATTGAGGTGGTCGATCACCTGATTATCG
GCAATGGCCGCTACGTCAGTTTGCGCGAACGAGGTCTGGGGTTCGAGTAG

Upstream 100 bases:

>100_bases
GCCGGCTACCGACAATTATCTGCCAGTAAAATTCGTGCGCACCTTTTGGCATCTCTCAACGGTATATATAGTAGAGCCGT
CATTTCAGCGCGAGGGATGC

Downstream 100 bases:

>100_bases
GCACAGGGGTGCGACACCGGTATATGAGGTCGCACCCTGTAATCTAGCTTAATGCTGGATGGCGACGATGTTGAAATATC
GTATCGACACTCACACCGCT

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MISLRIHEQPIHDQPRERLARQGAGALSDAELLAILLRVGTNGTNVLQLAQQLLAESGGLQGLQRLDFQELCRLHGMGVS
KAASVKAALEIGRRLARSAIEERFPIRSPADVATLLLVEMSHLDQEHLRTILLDTKNRVQQITTVYIGSLNSANVRVGEV
FKEAVRRNSAAIIVVHNHPSGEPTPSMEDIEITRQLVSAGRLLDIEVVDHLIIGNGRYVSLRERGLGFE

Sequences:

>Translated_229_residues
MISLRIHEQPIHDQPRERLARQGAGALSDAELLAILLRVGTNGTNVLQLAQQLLAESGGLQGLQRLDFQELCRLHGMGVS
KAASVKAALEIGRRLARSAIEERFPIRSPADVATLLLVEMSHLDQEHLRTILLDTKNRVQQITTVYIGSLNSANVRVGEV
FKEAVRRNSAAIIVVHNHPSGEPTPSMEDIEITRQLVSAGRLLDIEVVDHLIIGNGRYVSLRERGLGFE
>Mature_229_residues
MISLRIHEQPIHDQPRERLARQGAGALSDAELLAILLRVGTNGTNVLQLAQQLLAESGGLQGLQRLDFQELCRLHGMGVS
KAASVKAALEIGRRLARSAIEERFPIRSPADVATLLLVEMSHLDQEHLRTILLDTKNRVQQITTVYIGSLNSANVRVGEV
FKEAVRRNSAAIIVVHNHPSGEPTPSMEDIEITRQLVSAGRLLDIEVVDHLIIGNGRYVSLRERGLGFE

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family

Homologues:

Organism=Escherichia coli, GI87082300, Length=212, Percent_Identity=37.7358490566038, Blast_Score=160, Evalue=5e-41,
Organism=Escherichia coli, GI2367100, Length=134, Percent_Identity=39.5522388059701, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI1788312, Length=112, Percent_Identity=41.9642857142857, Blast_Score=91, Evalue=5e-20,
Organism=Escherichia coli, GI1788997, Length=112, Percent_Identity=41.9642857142857, Blast_Score=90, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y3603_CHLAA (A9WAJ7)

Other databases:

- EMBL:   CP000909
- RefSeq:   YP_001637176.1
- ProteinModelPortal:   A9WAJ7
- SMR:   A9WAJ7
- GeneID:   5825410
- GenomeReviews:   CP000909_GR
- KEGG:   cau:Caur_3603
- HOGENOM:   HBG751042
- OMA:   LDHLILG
- ProtClustDB:   PRK00024
- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891
- TIGRFAMs:   TIGR00608

Pfam domain/function: PF04002 DUF2466; SSF47781 RuvA_2_like

EC number: NA

Molecular weight: Translated: 25219; Mature: 25219

Theoretical pI: Translated: 7.30; Mature: 7.30

Prosite motif: PS01302 UPF0758

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISLRIHEQPIHDQPRERLARQGAGALSDAELLAILLRVGTNGTNVLQLAQQLLAESGGL
CEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH
QGLQRLDFQELCRLHGMGVSKAASVKAALEIGRRLARSAIEERFPIRSPADVATLLLVEM
HHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
SHLDQEHLRTILLDTKNRVQQITTVYIGSLNSANVRVGEVFKEAVRRNSAAIIVVHNHPS
HHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCC
GEPTPSMEDIEITRQLVSAGRLLDIEVVDHLIIGNGRYVSLRERGLGFE
CCCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHCCCCCEEEECCCCCCCC
>Mature Secondary Structure
MISLRIHEQPIHDQPRERLARQGAGALSDAELLAILLRVGTNGTNVLQLAQQLLAESGGL
CEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH
QGLQRLDFQELCRLHGMGVSKAASVKAALEIGRRLARSAIEERFPIRSPADVATLLLVEM
HHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
SHLDQEHLRTILLDTKNRVQQITTVYIGSLNSANVRVGEVFKEAVRRNSAAIIVVHNHPS
HHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCC
GEPTPSMEDIEITRQLVSAGRLLDIEVVDHLIIGNGRYVSLRERGLGFE
CCCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHCCCCCEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA