Click here to switch to the map view.

The map label for this gene is tsf [H]

Identifier: 222527068

GI number: 222527068

Start: 4793167

End: 4793694

Strand: Direct

Name: tsf [H]

Synonym: Chy400_3847

Alternate gene names: 222527068

Gene position: 4793167-4793694 (Clockwise)

Preceding gene: 222527067

Following gene: 222527069

Centisome position: 90.97

GC content: 53.79

Gene sequence:

>528_bases
GTGGCAGTATCAATTGAATTGGTGAAGGAATTGCGCGAGCGTACCGGTGCTGGCATTAAGGAGTGCCGGGACATTCTTGA
GCAGACTGGCGGTGATATTAACAAGGCAATCGAGATTCTTCGCGAGCGTGGTATCGAGGCGGCTGCTAAGAAGGCTTCAC
GCGAAGCAAACGAGGGACTGATTGGCGTGTATGTGCACTATGGCTCGCGCATTGCGGCAATGGTTGAGCTGAGCTGCGAG
ACTGACTTTGTTGCCCGCACTGCTGAATTTGGCCAACTGGCCAACGACCTGGCCCAGCACATCGTCGCGCTCAATCCGCG
CTTTATCAGCGTCAATGAAGTGACCGATGAAATGATCGCCGAGAGTGGTCAGTCACGCCAGGCGTTTATTGAGGAGACGG
TACTGCTCGAACAGAAGTTCATCAAAGACCCGGCACGCACCATCGAAGAAAAGATCAAAGAAGCCATCGCAAAGCTGGGT
GAAAACATCGTGGTCCGGCGGTTTATCCGCTACGAGGTTGGGGCATAA

Upstream 100 bases:

>100_bases
GTGTACGGGGGGGCGCATGCCCCTCCGTCGCACGATCCACATCGCTTGTATTTGGATCAACAGCAGAAAATACAGGTTTA
CAGGCAGAGGGAGCACAACT

Downstream 100 bases:

>100_bases
GAATCAGATGAGCCGGGCAGTTGCGGGACAACACCAGCATTGCCCGGCTCGTTGCTACCTGCGAGTTGTTCCATGCAGCA
GCCAAAATATCGCCGGATTT

Product: Translation elongation factor EFTs/EF1B dimerisation

Products: NA

Alternate protein names: EF-Ts [H]

Number of amino acids: Translated: 175; Mature: 174

Protein sequence:

>175_residues
MAVSIELVKELRERTGAGIKECRDILEQTGGDINKAIEILRERGIEAAAKKASREANEGLIGVYVHYGSRIAAMVELSCE
TDFVARTAEFGQLANDLAQHIVALNPRFISVNEVTDEMIAESGQSRQAFIEETVLLEQKFIKDPARTIEEKIKEAIAKLG
ENIVVRRFIRYEVGA

Sequences:

>Translated_175_residues
MAVSIELVKELRERTGAGIKECRDILEQTGGDINKAIEILRERGIEAAAKKASREANEGLIGVYVHYGSRIAAMVELSCE
TDFVARTAEFGQLANDLAQHIVALNPRFISVNEVTDEMIAESGQSRQAFIEETVLLEQKFIKDPARTIEEKIKEAIAKLG
ENIVVRRFIRYEVGA
>Mature_174_residues
AVSIELVKELRERTGAGIKECRDILEQTGGDINKAIEILRERGIEAAAKKASREANEGLIGVYVHYGSRIAAMVELSCET
DFVARTAEFGQLANDLAQHIVALNPRFISVNEVTDEMIAESGQSRQAFIEETVLLEQKFIKDPARTIEEKIKEAIAKLGE
NIVVRRFIRYEVGA

Specific function: Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome [H]

COG id: COG0264

COG function: function code J; Translation elongation factor Ts

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the EF-Ts family [H]

Homologues:

Organism=Homo sapiens, GI291084500, Length=181, Percent_Identity=32.0441988950276, Blast_Score=77, Evalue=8e-15,
Organism=Homo sapiens, GI171846268, Length=170, Percent_Identity=32.3529411764706, Blast_Score=73, Evalue=1e-13,
Organism=Escherichia coli, GI1786366, Length=172, Percent_Identity=34.8837209302326, Blast_Score=78, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17561440, Length=171, Percent_Identity=33.9181286549708, Blast_Score=77, Evalue=4e-15,

Paralogues:

None

Copy number: 2670 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1100 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 4173 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 14563 Molecules/Cell In: Growth Phase, Gluco

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001816
- InterPro:   IPR014039
- InterPro:   IPR018101
- InterPro:   IPR009060
- InterPro:   IPR000449 [H]

Pfam domain/function: PF00889 EF_TS; PF00627 UBA [H]

EC number: NA

Molecular weight: Translated: 19462; Mature: 19330

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: PS01127 EF_TS_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVSIELVKELRERTGAGIKECRDILEQTGGDINKAIEILRERGIEAAAKKASREANEGL
CCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHHHCCCE
IGVYVHYGSRIAAMVELSCETDFVARTAEFGQLANDLAQHIVALNPRFISVNEVTDEMIA
EEEEEHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHH
ESGQSRQAFIEETVLLEQKFIKDPARTIEEKIKEAIAKLGENIVVRRFIRYEVGA
CCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AVSIELVKELRERTGAGIKECRDILEQTGGDINKAIEILRERGIEAAAKKASREANEGL
CCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHHHCCCE
IGVYVHYGSRIAAMVELSCETDFVARTAEFGQLANDLAQHIVALNPRFISVNEVTDEMIA
EEEEEHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHH
ESGQSRQAFIEETVLLEQKFIKDPARTIEEKIKEAIAKLGENIVVRRFIRYEVGA
CCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA