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The map label for this gene is arlR [H]

Identifier: 222527023

GI number: 222527023

Start: 4733140

End: 4733823

Strand: Direct

Name: arlR [H]

Synonym: Chy400_3802

Alternate gene names: 222527023

Gene position: 4733140-4733823 (Clockwise)

Preceding gene: 222527015

Following gene: 222527024

Centisome position: 89.83

GC content: 57.16

Gene sequence:

>684_bases
ATGCGGATTTTGATTGTCGAAGACGACAAGCGCCTGGCCCGACTGATTGAACGGGTCTTGAGTGAAGAACGACACACGGT
TGACGTGGCCTGGGATGGTGAGAGCGGGCTTGATCTGCTGATGCAGGGGGTCTACGATGTGGCAATTATCGATTGGATGC
TACCGGGACGCGACGGGCCATCGTTGTGTCGCGCAGCCCGCGCTGCTCGCCTGCCAACCGCTCTCCTCCTCTTAACGGCC
CGTGGTCAGATCGAAGATAAAGTCCTCGGTTTCGAGAGTGGTGCTGATGATTACCTGGTTAAACCCTTTGCCTTCGAGGA
GCTACTGGCACGGGTGCGAGCGCTGGGGCGACGGTTCCACCCCAATCTTAGCGCGAACGATGAACTGCGGGTCGGCACCA
TTGTGCTCGATCTACGAAATTACACGGCACGCCGGGGCGAGCGTCGGCTTGATCTGACCCCCACCGAGTGGCGTCTGCTG
GAATATCTGATGCGTAACGTCGGCCAGACCTTGACTCGCCAGCAAATTCTCGATTATGTCTGGTCATTTGAACACGACGT
ACAACCGCAAATGGTCGATGTCTACATCTCATACCTGCGCCGCAAGCTCAATGCGTCGGGCGAGACCGACCCGATCAACA
CCATTCGAGGGATCGGTTACCGATTGGAGGCTGAACGTGTTTAG

Upstream 100 bases:

>100_bases
CCTTAAAACCGCCGCGCAACATTCCAATCTTTTTCCAAGGTTCTTGAGGTATAACAAACATCAGAGGCATAGCCTGTCAG
GTGAGGGAGAGACAACAGCG

Downstream 100 bases:

>100_bases
GGGACTACGCTGGCAATTTACCCTGTTCTACGCCTGTGCTGCCGTAGCTATCATCGCATTGATCGGCGGCGGCACCTACG
TGAGCGTTGCCGGCTACTTC

Product: winged helix family two component transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MRILIVEDDKRLARLIERVLSEERHTVDVAWDGESGLDLLMQGVYDVAIIDWMLPGRDGPSLCRAARAARLPTALLLLTA
RGQIEDKVLGFESGADDYLVKPFAFEELLARVRALGRRFHPNLSANDELRVGTIVLDLRNYTARRGERRLDLTPTEWRLL
EYLMRNVGQTLTRQQILDYVWSFEHDVQPQMVDVYISYLRRKLNASGETDPINTIRGIGYRLEAERV

Sequences:

>Translated_227_residues
MRILIVEDDKRLARLIERVLSEERHTVDVAWDGESGLDLLMQGVYDVAIIDWMLPGRDGPSLCRAARAARLPTALLLLTA
RGQIEDKVLGFESGADDYLVKPFAFEELLARVRALGRRFHPNLSANDELRVGTIVLDLRNYTARRGERRLDLTPTEWRLL
EYLMRNVGQTLTRQQILDYVWSFEHDVQPQMVDVYISYLRRKLNASGETDPINTIRGIGYRLEAERV
>Mature_227_residues
MRILIVEDDKRLARLIERVLSEERHTVDVAWDGESGLDLLMQGVYDVAIIDWMLPGRDGPSLCRAARAARLPTALLLLTA
RGQIEDKVLGFESGADDYLVKPFAFEELLARVRALGRRFHPNLSANDELRVGTIVLDLRNYTARRGERRLDLTPTEWRLL
EYLMRNVGQTLTRQQILDYVWSFEHDVQPQMVDVYISYLRRKLNASGETDPINTIRGIGYRLEAERV

Specific function: Member of the two-component regulatory system ArlS/ArlR [H]

COG id: COG0745

COG function: function code TK; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1786784, Length=224, Percent_Identity=41.9642857142857, Blast_Score=163, Evalue=1e-41,
Organism=Escherichia coli, GI1789402, Length=222, Percent_Identity=40.5405405405405, Blast_Score=143, Evalue=9e-36,
Organism=Escherichia coli, GI87082012, Length=226, Percent_Identity=37.6106194690265, Blast_Score=143, Evalue=9e-36,
Organism=Escherichia coli, GI1786599, Length=223, Percent_Identity=34.5291479820628, Blast_Score=141, Evalue=3e-35,
Organism=Escherichia coli, GI1788394, Length=226, Percent_Identity=34.5132743362832, Blast_Score=128, Evalue=4e-31,
Organism=Escherichia coli, GI1790860, Length=221, Percent_Identity=37.5565610859729, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1789809, Length=229, Percent_Identity=34.9344978165939, Blast_Score=124, Evalue=5e-30,
Organism=Escherichia coli, GI1790552, Length=224, Percent_Identity=35.7142857142857, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI1787375, Length=223, Percent_Identity=33.1838565022422, Blast_Score=115, Evalue=2e-27,
Organism=Escherichia coli, GI1786911, Length=226, Percent_Identity=34.070796460177, Blast_Score=111, Evalue=3e-26,
Organism=Escherichia coli, GI2367329, Length=226, Percent_Identity=38.4955752212389, Blast_Score=110, Evalue=7e-26,
Organism=Escherichia coli, GI1787229, Length=231, Percent_Identity=30.7359307359307, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1790863, Length=231, Percent_Identity=31.6017316017316, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI145693140, Length=232, Percent_Identity=28.8793103448276, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788191, Length=118, Percent_Identity=33.0508474576271, Blast_Score=60, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 26136; Mature: 26136

Theoretical pI: Translated: 5.83; Mature: 5.83

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00217 SUGAR_TRANSPORT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRILIVEDDKRLARLIERVLSEERHTVDVAWDGESGLDLLMQGVYDVAIIDWMLPGRDGP
CEEEEEECCHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCH
SLCRAARAARLPTALLLLTARGQIEDKVLGFESGADDYLVKPFAFEELLARVRALGRRFH
HHHHHHHHHHCCHHHHHEECCCCCHHHHCCCCCCCCCCEECHHHHHHHHHHHHHHHHHCC
PNLSANDELRVGTIVLDLRNYTARRGERRLDLTPTEWRLLEYLMRNVGQTLTRQQILDYV
CCCCCCCCEEEEEEEEEHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
WSFEHDVQPQMVDVYISYLRRKLNASGETDPINTIRGIGYRLEAERV
HCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCEEEECCCC
>Mature Secondary Structure
MRILIVEDDKRLARLIERVLSEERHTVDVAWDGESGLDLLMQGVYDVAIIDWMLPGRDGP
CEEEEEECCHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCH
SLCRAARAARLPTALLLLTARGQIEDKVLGFESGADDYLVKPFAFEELLARVRALGRRFH
HHHHHHHHHHCCHHHHHEECCCCCHHHHCCCCCCCCCCEECHHHHHHHHHHHHHHHHHCC
PNLSANDELRVGTIVLDLRNYTARRGERRLDLTPTEWRLLEYLMRNVGQTLTRQQILDYV
CCCCCCCCEEEEEEEEEHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
WSFEHDVQPQMVDVYISYLRRKLNASGETDPINTIRGIGYRLEAERV
HCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA