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The map label for this gene is nifU [H]

Identifier: 222526975

GI number: 222526975

Start: 4675314

End: 4675706

Strand: Direct

Name: nifU [H]

Synonym: Chy400_3753

Alternate gene names: 222526975

Gene position: 4675314-4675706 (Clockwise)

Preceding gene: 222526974

Following gene: 222526976

Centisome position: 88.73

GC content: 55.73

Gene sequence:

>393_bases
ATGGATGACATTTATCGCGAACAAATTCTCGAACATGCCCGTCATCCGCGCAACTTCGGTCATCTACCGGCACCGACGGT
TATCCGCGAGGAGCGTAATCCGCTCTGCGGCGATCAAATCCGGCTGGAACTGGCGATTACCGATGATGTGATTACCGATG
TGCGCTTCAGCGGGCGAGGGTGTGCGATCAGCCAGGCCAGTGCGTCACTCCTGACCGAAGCGATCAAGGGGATGCCGGTC
GCTGCCGCCAAACAGTTTAGTAAGGATGATCTACTCGATTTAATCGGGATACCGCTGGCTCACAACCCAACCCGGCTCAA
ATGCGCCTTGCTTTCGCTGAAAGCCTTAAAGGCCGGCCTCTACGGGGTGAGCCAGATGGATGAAGATATGTAG

Upstream 100 bases:

>100_bases
CAGCTTCTACCTGTACAACTTGCCCGAAGAGATTGATCGGCTGGTTGCCGGGTTGCACAAGGCACGACAGCTCTTTGCCT
GATAGAGGCAGGAAACGACC

Downstream 100 bases:

>100_bases
TCAGATACCTGGAAAAGGAGTAGCACCGTGGTTGCTGAAGCAGTCAATTTGCAATTCGATTACTCGCGCTATGGTTTCCG
TCAGGAAGAGCGCTATGTCT

Product: SUF system FeS assembly protein, NifU family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 130; Mature: 130

Protein sequence:

>130_residues
MDDIYREQILEHARHPRNFGHLPAPTVIREERNPLCGDQIRLELAITDDVITDVRFSGRGCAISQASASLLTEAIKGMPV
AAAKQFSKDDLLDLIGIPLAHNPTRLKCALLSLKALKAGLYGVSQMDEDM

Sequences:

>Translated_130_residues
MDDIYREQILEHARHPRNFGHLPAPTVIREERNPLCGDQIRLELAITDDVITDVRFSGRGCAISQASASLLTEAIKGMPV
AAAKQFSKDDLLDLIGIPLAHNPTRLKCALLSLKALKAGLYGVSQMDEDM
>Mature_130_residues
MDDIYREQILEHARHPRNFGHLPAPTVIREERNPLCGDQIRLELAITDDVITDVRFSGRGCAISQASASLLTEAIKGMPV
AAAKQFSKDDLLDLIGIPLAHNPTRLKCALLSLKALKAGLYGVSQMDEDM

Specific function: May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (Potential) [H]

COG id: COG0822

COG function: function code C; NifU homolog involved in Fe-S cluster formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifU family [H]

Homologues:

Organism=Homo sapiens, GI56699456, Length=126, Percent_Identity=30.952380952381, Blast_Score=64, Evalue=4e-11,
Organism=Escherichia coli, GI1788878, Length=125, Percent_Identity=29.6, Blast_Score=71, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17543474, Length=120, Percent_Identity=31.6666666666667, Blast_Score=64, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6325122, Length=122, Percent_Identity=33.6065573770492, Blast_Score=71, Evalue=5e-14,
Organism=Saccharomyces cerevisiae, GI6324800, Length=122, Percent_Identity=28.6885245901639, Blast_Score=64, Evalue=9e-12,
Organism=Drosophila melanogaster, GI21355597, Length=128, Percent_Identity=32.8125, Blast_Score=70, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002871
- InterPro:   IPR011341 [H]

Pfam domain/function: PF01592 NifU_N [H]

EC number: NA

Molecular weight: Translated: 14294; Mature: 14294

Theoretical pI: Translated: 6.09; Mature: 6.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDIYREQILEHARHPRNFGHLPAPTVIREERNPLCGDQIRLELAITDDVITDVRFSGRG
CCHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCEEEEEEEECCHHHHHCEECCCC
CAISQASASLLTEAIKGMPVAAAKQFSKDDLLDLIGIPLAHNPTRLKCALLSLKALKAGL
CCHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
YGVSQMDEDM
HCHHHCCCCC
>Mature Secondary Structure
MDDIYREQILEHARHPRNFGHLPAPTVIREERNPLCGDQIRLELAITDDVITDVRFSGRG
CCHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCEEEEEEEECCHHHHHCEECCCC
CAISQASASLLTEAIKGMPVAAAKQFSKDDLLDLIGIPLAHNPTRLKCALLSLKALKAGL
CCHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
YGVSQMDEDM
HCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]